Wall clock time and date at job start Tue Mar 31 2020 06:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47217 * 2 1 4 4 C 1.50705 * 109.46746 * 120.00005 * 2 1 3 5 5 H 1.07993 * 119.99807 * 120.00280 * 4 2 1 6 6 C 1.37881 * 119.99820 * 299.99583 * 4 2 1 7 7 N 1.31515 * 120.00208 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99965 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46803 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47106 * 120.00167 * 8 6 4 11 11 H 1.48498 * 109.47030 * 240.00472 * 8 6 4 12 12 N 1.46903 * 109.47454 * 239.99712 * 2 1 3 13 13 C 1.46895 * 110.99798 * 306.05028 * 12 2 1 14 14 C 1.46897 * 110.99609 * 70.00381 * 12 2 1 15 15 C 1.50698 * 109.46839 * 170.00309 * 14 12 2 16 16 C 1.38407 * 119.84706 * 89.99676 * 15 14 12 17 17 C 1.38137 * 120.18455 * 179.69974 * 16 15 14 18 18 C 1.38608 * 119.82563 * 0.27604 * 17 16 15 19 19 C 1.39464 * 120.03087 * 0.02562 * 18 17 16 20 20 C 1.38126 * 119.84382 * 270.28830 * 15 14 12 21 21 O 1.35563 * 107.27187 * 180.02562 * 19 18 17 22 22 C 1.34229 * 109.18088 * 359.97438 * 21 19 18 23 23 O 1.21595 * 125.27497 * 180.02562 * 22 21 19 24 24 N 1.34778 * 109.44877 * 0.02562 * 22 21 19 25 25 C 1.46496 * 126.25400 * 179.97438 * 24 22 21 26 26 H 1.09004 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47547 * 300.00272 * 1 2 3 28 28 H 1.09002 * 109.46606 * 60.00557 * 1 2 3 29 29 H 0.96995 * 120.00339 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46834 * 183.95533 * 13 12 2 31 31 H 1.09002 * 109.47225 * 303.95138 * 13 12 2 32 32 H 1.08997 * 109.47152 * 63.95311 * 13 12 2 33 33 H 1.08999 * 109.47537 * 49.99904 * 14 12 2 34 34 H 1.09007 * 109.47129 * 289.99471 * 14 12 2 35 35 H 1.08002 * 119.90929 * 359.97438 * 16 15 14 36 36 H 1.07996 * 120.08476 * 180.29860 * 17 16 15 37 37 H 1.07997 * 120.03976 * 0.02562 * 20 15 14 38 38 H 1.09003 * 109.47373 * 270.02014 * 25 24 22 39 39 H 1.08995 * 109.47437 * 30.02572 * 25 24 22 40 40 H 1.09005 * 109.47125 * 150.02556 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.1481 -2.2856 3.6039 10 1 3.1470 -0.1857 4.8162 11 1 1.1675 -1.5865 4.8165 12 7 2.0198 -0.6926 -1.1994 13 6 1.4344 -2.0355 -1.3077 14 6 1.7531 0.0972 -2.4090 15 6 2.4776 -0.5164 -3.5793 16 6 1.8503 -1.4804 -4.3492 17 6 2.5056 -2.0430 -5.4272 18 6 3.7971 -1.6438 -5.7339 19 6 4.4323 -0.6770 -4.9549 20 6 3.7668 -0.1184 -3.8749 21 8 5.6677 -0.4857 -5.4792 22 6 5.8243 -1.2886 -6.5434 23 8 6.8240 -1.3541 -7.2325 24 7 4.7018 -2.0110 -6.7296 25 6 4.4737 -3.0007 -7.7853 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 0.7081 1.1610 3.4844 30 1 1.8666 -2.5521 -2.1647 31 1 1.6466 -2.5987 -0.3990 32 1 0.3557 -1.9520 -1.4399 33 1 2.1026 1.1189 -2.2603 34 1 0.6815 0.1052 -2.6088 35 1 0.8440 -1.7905 -4.1091 36 1 2.0128 -2.7916 -6.0298 37 1 4.2540 0.6305 -3.2682 38 1 4.0443 -2.5087 -8.6581 39 1 5.4212 -3.4647 -8.0593 40 1 3.7858 -3.7653 -7.4241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351403140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:43 Heat of formation + Delta-G solvation = -2.208402 kcal Electronic energy + Delta-G solvation = -22868.869372 eV Core-core repulsion = 19457.503215 eV Total energy + Delta-G solvation = -3411.366157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.31582 -39.09937 -37.80879 -36.96297 -35.89359 -32.88280 -31.11832 -30.40674 -28.71468 -27.99439 -26.46916 -25.26551 -23.79039 -23.50353 -21.87083 -21.59168 -19.34458 -18.36836 -17.73941 -17.58487 -16.47324 -16.11268 -15.31350 -15.24363 -14.94916 -14.42590 -14.32793 -14.23051 -13.98549 -13.42284 -13.34654 -13.27930 -12.84923 -12.60013 -12.21005 -12.01321 -11.63165 -11.35219 -11.17617 -11.08714 -10.99566 -10.83614 -10.70985 -10.53774 -10.43458 -10.09242 -9.87346 -8.95890 -8.83646 -8.42019 -8.15411 -7.23904 -6.04317 -4.07868 1.02304 1.07647 1.94561 2.33824 2.74129 3.28522 3.36908 3.41100 3.47817 4.21913 4.33580 4.39879 4.75678 4.86003 4.91245 5.09058 5.14544 5.18753 5.21751 5.26255 5.28736 5.64916 5.72029 5.86990 6.02278 6.13974 6.15182 6.18270 6.29665 6.45758 6.57586 6.63421 6.76397 6.82916 7.05136 7.09492 7.38701 7.49392 7.65475 7.79863 8.06254 8.31415 8.52307 8.98422 9.57501 11.02743 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.003371 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.128652 B = 8304.535132 C = 8658.708298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.528 5.528 13 C 0.031 3.969 14 C 0.089 3.911 15 C -0.045 4.045 16 C -0.091 4.091 17 C -0.102 4.102 18 C 0.056 3.944 19 C 0.033 3.967 20 C -0.058 4.058 21 O -0.235 6.235 22 C 0.634 3.366 23 O -0.497 6.497 24 N -0.550 5.550 25 C 0.102 3.898 26 H 0.032 0.968 27 H 0.088 0.912 28 H 0.007 0.993 29 H 0.260 0.740 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.018 0.982 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.144 0.856 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 -5.741 -17.636 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.058 0.942 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.252 5.252 13 C -0.118 4.118 14 C -0.039 4.039 15 C -0.047 4.047 16 C -0.110 4.110 17 C -0.123 4.123 18 C -0.041 4.041 19 C -0.013 4.013 20 C -0.077 4.077 21 O -0.141 6.141 22 C 0.389 3.611 23 O -0.382 6.382 24 N -0.283 5.283 25 C -0.038 4.038 26 H 0.051 0.949 27 H 0.107 0.893 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.036 0.964 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.162 0.838 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.118 -5.601 -17.816 18.709 hybrid contribution -0.582 -0.462 0.692 1.015 sum 0.536 -6.063 -17.124 18.173 Atomic orbital electron populations 1.22417 1.00736 0.99470 1.00570 1.19357 0.89830 0.94550 0.85817 0.94197 1.21131 1.30469 1.12508 0.89522 0.91865 1.24921 0.95229 0.95132 0.99014 1.69884 1.37105 1.23095 1.23350 0.86474 0.78529 0.79705 0.82906 1.19734 1.21059 1.21211 1.62409 1.58904 1.02427 1.01457 1.22311 0.96056 0.91899 1.01523 1.21050 0.96657 0.97657 0.88566 1.19803 0.92840 0.95858 0.96178 1.20981 1.00457 0.95873 0.93721 1.19969 0.90849 1.02142 0.99315 1.18481 0.93962 0.99689 0.92009 1.18987 0.83297 1.00280 0.98716 1.19955 0.93412 1.00891 0.93449 1.84987 1.32112 1.56692 1.40283 1.18527 0.83770 0.78490 0.80307 1.91128 1.30130 1.69123 1.47771 1.45636 1.13824 1.39837 1.29013 1.21760 1.03866 0.90024 0.88144 0.94936 0.89291 0.97425 0.93042 0.93622 0.90799 0.96375 0.90074 0.93983 0.84541 0.85085 0.83807 0.90968 0.89282 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 8.22 37.16 0.31 -3.58 16 2 C 0.21 4.93 2.31 -68.86 -0.16 4.77 16 3 H 0.04 1.03 7.93 -51.93 -0.41 0.62 16 4 C -0.50 -13.04 7.91 -34.44 -0.27 -13.31 16 5 H 0.06 1.68 7.12 -52.49 -0.37 1.31 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.53 -10.29 4.69 -237.73 -1.12 -11.40 16 13 C 0.03 0.54 8.26 60.06 0.50 1.04 16 14 C 0.09 1.39 4.68 -4.98 -0.02 1.37 16 15 C -0.05 -0.61 4.88 -104.60 -0.51 -1.12 16 16 C -0.09 -1.02 7.95 -39.56 -0.31 -1.33 16 17 C -0.10 -1.02 10.04 -39.48 -0.40 -1.42 16 18 C 0.06 0.67 6.84 -83.79 -0.57 0.10 16 19 C 0.03 0.46 7.35 -38.99 -0.29 0.18 16 20 C -0.06 -0.79 9.71 -39.49 -0.38 -1.17 16 21 O -0.24 -3.60 10.72 -22.00 -0.24 -3.84 16 22 C 0.63 9.35 9.07 54.06 0.49 9.84 16 23 O -0.50 -8.39 17.81 -19.00 -0.34 -8.73 16 24 N -0.55 -6.40 3.21 -126.44 -0.41 -6.81 16 25 C 0.10 0.73 11.06 59.84 0.66 1.39 16 26 H 0.03 0.70 6.41 -51.93 -0.33 0.37 16 27 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 28 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 29 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.05 0.70 6.16 -51.93 -0.32 0.38 16 31 H 0.07 1.45 6.76 -51.93 -0.35 1.10 16 32 H 0.02 0.31 6.46 -51.93 -0.34 -0.03 16 33 H 0.08 1.27 7.87 -51.93 -0.41 0.86 16 34 H 0.04 0.64 7.00 -51.92 -0.36 0.27 16 35 H 0.14 1.32 8.02 -52.49 -0.42 0.90 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.61 8.06 -51.93 -0.42 0.19 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -30.18 327.69 -7.85 -38.02 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -5.24 Total: -2.19 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.06 Total: -1.80 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.89 Total: -42.24 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.57 Total: -12.57 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.18 -7.85 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351403140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.816 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds