Wall clock time and date at job start Tue Mar 31 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47217 * 2 1 4 4 C 1.50705 * 109.46746 * 120.00005 * 2 1 3 5 5 H 1.07993 * 119.99807 * 120.00280 * 4 2 1 6 6 C 1.37881 * 119.99820 * 299.99583 * 4 2 1 7 7 N 1.31515 * 120.00208 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99965 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46803 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47106 * 120.00167 * 8 6 4 11 11 H 1.48498 * 109.47030 * 240.00472 * 8 6 4 12 12 N 1.46903 * 109.47454 * 239.99712 * 2 1 3 13 13 C 1.46895 * 110.99798 * 306.05028 * 12 2 1 14 14 C 1.46897 * 110.99609 * 70.00381 * 12 2 1 15 15 C 1.50698 * 109.46839 * 170.00309 * 14 12 2 16 16 C 1.38407 * 119.84706 * 89.99676 * 15 14 12 17 17 C 1.38137 * 120.18455 * 179.69974 * 16 15 14 18 18 C 1.38608 * 119.82563 * 0.27604 * 17 16 15 19 19 C 1.39464 * 120.03087 * 0.02562 * 18 17 16 20 20 C 1.38126 * 119.84382 * 270.28830 * 15 14 12 21 21 O 1.35563 * 107.27187 * 180.02562 * 19 18 17 22 22 C 1.34229 * 109.18088 * 359.97438 * 21 19 18 23 23 O 1.21595 * 125.27497 * 180.02562 * 22 21 19 24 24 N 1.34778 * 109.44877 * 0.02562 * 22 21 19 25 25 C 1.46496 * 126.25400 * 179.97438 * 24 22 21 26 26 H 1.09004 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47547 * 300.00272 * 1 2 3 28 28 H 1.09002 * 109.46606 * 60.00557 * 1 2 3 29 29 H 0.96995 * 120.00339 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46834 * 183.95533 * 13 12 2 31 31 H 1.09002 * 109.47225 * 303.95138 * 13 12 2 32 32 H 1.08997 * 109.47152 * 63.95311 * 13 12 2 33 33 H 1.08999 * 109.47537 * 49.99904 * 14 12 2 34 34 H 1.09007 * 109.47129 * 289.99471 * 14 12 2 35 35 H 1.08002 * 119.90929 * 359.97438 * 16 15 14 36 36 H 1.07996 * 120.08476 * 180.29860 * 17 16 15 37 37 H 1.07997 * 120.03976 * 0.02562 * 20 15 14 38 38 H 1.09003 * 109.47373 * 270.02014 * 25 24 22 39 39 H 1.08995 * 109.47437 * 30.02572 * 25 24 22 40 40 H 1.09005 * 109.47125 * 150.02556 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.1481 -2.2856 3.6039 10 1 3.1470 -0.1857 4.8162 11 1 1.1675 -1.5865 4.8165 12 7 2.0198 -0.6926 -1.1994 13 6 1.4344 -2.0355 -1.3077 14 6 1.7531 0.0972 -2.4090 15 6 2.4776 -0.5164 -3.5793 16 6 1.8503 -1.4804 -4.3492 17 6 2.5056 -2.0430 -5.4272 18 6 3.7971 -1.6438 -5.7339 19 6 4.4323 -0.6770 -4.9549 20 6 3.7668 -0.1184 -3.8749 21 8 5.6677 -0.4857 -5.4792 22 6 5.8243 -1.2886 -6.5434 23 8 6.8240 -1.3541 -7.2325 24 7 4.7018 -2.0110 -6.7296 25 6 4.4737 -3.0007 -7.7853 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 0.7081 1.1610 3.4844 30 1 1.8666 -2.5521 -2.1647 31 1 1.6466 -2.5987 -0.3990 32 1 0.3557 -1.9520 -1.4399 33 1 2.1026 1.1189 -2.2603 34 1 0.6815 0.1052 -2.6088 35 1 0.8440 -1.7905 -4.1091 36 1 2.0128 -2.7916 -6.0298 37 1 4.2540 0.6305 -3.2682 38 1 4.0443 -2.5087 -8.6581 39 1 5.4212 -3.4647 -8.0593 40 1 3.7858 -3.7653 -7.4241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351403140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:42 Heat of formation + Delta-G solvation = -20.704229 kcal Electronic energy + Delta-G solvation = -22869.671411 eV Core-core repulsion = 19457.503215 eV Total energy + Delta-G solvation = -3412.168196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.34112 -40.21566 -39.04277 -38.22881 -36.98116 -34.71334 -32.26334 -31.52124 -30.06285 -29.03212 -27.73500 -27.19179 -25.19944 -24.52341 -22.81350 -22.76923 -20.99277 -19.38603 -18.73081 -18.63358 -18.15246 -17.45449 -16.97847 -16.25181 -16.14907 -15.93468 -15.35029 -15.15365 -15.04362 -14.82492 -14.58107 -14.46290 -14.21788 -13.58325 -13.45276 -13.21311 -13.06692 -12.80088 -12.73846 -12.54140 -12.47288 -12.29370 -12.17579 -12.07162 -11.94163 -11.59340 -11.48539 -10.85527 -10.45179 -9.79590 -9.16584 -8.74642 -8.06926 -6.16621 0.04948 0.10822 1.02266 1.25989 1.42795 1.46171 1.56622 1.75301 2.43816 2.52776 3.22676 3.30365 3.54959 3.60104 3.87825 4.03567 4.11003 4.27972 4.43263 4.48067 4.61965 4.65514 4.69839 4.74212 4.76462 4.87293 4.94615 4.97057 5.00168 5.18031 5.23023 5.24626 5.30232 5.49878 5.58456 5.62248 5.77245 5.87016 6.08956 6.27774 6.45716 6.55249 6.79220 6.97812 7.52660 8.98705 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.003371 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.128652 B = 8304.535132 C = 8658.708298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 H 0.007 0.993 4 C -0.509 4.509 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.281 1.281 12 N -0.543 5.543 13 C 0.036 3.964 14 C 0.093 3.907 15 C -0.054 4.054 16 C -0.083 4.083 17 C -0.081 4.081 18 C 0.059 3.941 19 C 0.007 3.993 20 C -0.069 4.069 21 O -0.256 6.256 22 C 0.624 3.376 23 O -0.530 6.530 24 N -0.538 5.538 25 C 0.090 3.910 26 H 0.036 0.964 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.162 0.838 36 H 0.176 0.824 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 -7.891 -19.251 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.108 3.892 3 H 0.025 0.975 4 C -0.548 4.548 5 H 0.072 0.928 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.207 1.207 12 N -0.266 5.266 13 C -0.112 4.112 14 C -0.035 4.035 15 C -0.056 4.056 16 C -0.102 4.102 17 C -0.101 4.101 18 C -0.038 4.038 19 C -0.039 4.039 20 C -0.088 4.088 21 O -0.162 6.162 22 C 0.379 3.621 23 O -0.417 6.417 24 N -0.270 5.270 25 C -0.048 4.048 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.179 0.821 36 H 0.193 0.807 37 H 0.152 0.848 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.359 -7.773 -19.452 20.950 hybrid contribution -0.135 0.209 1.122 1.149 sum -0.494 -7.564 -18.330 19.836 Atomic orbital electron populations 1.22202 0.99914 0.99507 1.00170 1.19078 0.90294 0.92862 0.86984 0.97472 1.21414 1.30151 1.12259 0.90972 0.92777 1.25617 0.95554 0.95826 1.01624 1.70005 1.38063 1.24198 1.23800 0.85576 0.78038 0.78654 0.79755 1.19417 1.21097 1.20686 1.62237 1.59428 1.03368 1.01597 1.22272 0.96758 0.90657 1.01484 1.20997 0.97687 0.96941 0.87830 1.19589 0.92650 0.97214 0.96130 1.21250 1.01288 0.94470 0.93179 1.20369 0.89428 1.01717 0.98600 1.18731 0.94595 0.98977 0.91509 1.19160 0.83243 1.01807 0.99651 1.19920 0.93895 1.01225 0.93762 1.84917 1.33216 1.57263 1.40787 1.18699 0.84390 0.78880 0.80114 1.91087 1.31489 1.70270 1.48841 1.45826 1.12439 1.39449 1.29319 1.22206 1.04878 0.89930 0.87766 0.94486 0.92364 0.95061 0.93103 0.90743 0.93317 0.95382 0.91116 0.92710 0.82065 0.80667 0.84843 0.89125 0.89368 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.07 8.22 71.98 0.59 -6.48 16 2 C 0.21 10.18 2.31 44.17 0.10 10.29 16 3 H 0.01 0.39 7.93 -2.39 -0.02 0.37 16 4 C -0.51 -27.03 7.91 25.60 0.20 -26.83 16 5 H 0.05 2.91 7.12 -2.91 -0.02 2.89 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -51.58 11.32 21.45 0.24 -51.34 16 8 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.54 -20.78 4.69 -906.05 -4.25 -25.03 16 13 C 0.04 1.21 8.26 127.69 1.05 2.27 16 14 C 0.09 2.81 4.68 85.56 0.40 3.21 16 15 C -0.05 -1.35 4.88 -19.85 -0.10 -1.45 16 16 C -0.08 -1.49 7.95 22.29 0.18 -1.32 16 17 C -0.08 -1.22 10.04 22.33 0.22 -1.00 16 18 C 0.06 1.26 6.84 38.31 0.26 1.52 16 19 C 0.01 0.19 7.35 22.65 0.17 0.36 16 20 C -0.07 -1.86 9.71 22.33 0.22 -1.64 16 21 O -0.26 -8.00 10.72 8.48 0.09 -7.91 16 22 C 0.62 18.28 9.07 129.79 1.18 19.45 16 23 O -0.53 -18.12 17.81 19.20 0.34 -17.78 16 24 N -0.54 -11.29 3.21 -784.53 -2.52 -13.81 16 25 C 0.09 0.96 11.06 127.77 1.41 2.38 16 26 H 0.04 1.57 6.41 -2.39 -0.02 1.55 16 27 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 28 H 0.03 1.20 6.91 -2.39 -0.02 1.18 16 29 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 30 H 0.07 2.02 6.16 -2.39 -0.01 2.01 16 31 H 0.05 1.86 6.76 -2.39 -0.02 1.84 16 32 H 0.03 0.87 6.46 -2.39 -0.02 0.86 16 33 H 0.07 2.25 7.87 -2.39 -0.02 2.23 16 34 H 0.05 1.52 7.00 -2.38 -0.02 1.50 16 35 H 0.16 2.19 8.02 -2.91 -0.02 2.17 16 36 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 37 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.09 1.00 8.06 -2.39 -0.02 0.98 16 40 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 Total: -1.00 -67.52 327.69 3.33 -64.19 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.05 Total: 4.71 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 6.34 Total: 1.86 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -6.53 Total: -90.18 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: 0.43 Total: -25.68 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -67.52 3.33 -64.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351403140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.486 kcal (2) G-P(sol) polarization free energy of solvation -67.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds