Wall clock time and date at job start Tue Mar 31 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.64229 * 2 1 4 4 C 1.54317 * 110.72512 * 123.15229 * 2 1 3 5 5 N 1.47021 * 107.27644 * 140.72988 * 4 2 1 6 6 C 1.34770 * 125.65220 * 181.08367 * 5 4 2 7 7 O 1.21580 * 119.99932 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00074 * 180.02562 * 6 5 4 9 9 C 1.39251 * 120.00064 * 176.69540 * 8 6 5 10 10 C 1.39479 * 119.83055 * 217.52446 * 9 8 6 11 11 C 1.36383 * 120.16408 * 179.75889 * 10 9 8 12 12 C 1.40869 * 119.82687 * 0.51077 * 11 10 9 13 13 C 1.41156 * 120.16200 * 179.71759 * 12 11 10 14 14 H 1.07999 * 120.00011 * 157.94345 * 13 12 11 15 15 C 1.39903 * 120.00028 * 337.94441 * 13 12 11 16 16 N 1.30882 * 119.99671 * 327.62367 * 15 13 12 17 17 Si 1.86793 * 119.99993 * 147.61850 * 15 13 12 18 18 H 1.48507 * 109.46753 * 94.98629 * 17 15 13 19 19 H 1.48493 * 109.47226 * 214.98408 * 17 15 13 20 20 H 1.48499 * 109.47316 * 334.99184 * 17 15 13 21 21 C 1.40862 * 119.67290 * 359.74238 * 12 11 10 22 22 C 1.36380 * 119.83039 * 0.02562 * 21 12 11 23 23 C 1.47429 * 108.70138 * 1.06198 * 5 4 2 24 24 C 1.54918 * 104.92610 * 335.81338 * 23 5 4 25 25 H 1.08995 * 111.00034 * 155.14117 * 24 23 5 26 26 O 1.42900 * 111.00518 * 278.99151 * 24 23 5 27 27 H 1.09007 * 109.46751 * 298.30471 * 1 2 3 28 28 H 1.08997 * 109.47535 * 58.30293 * 1 2 3 29 29 H 1.08998 * 109.47629 * 178.30580 * 1 2 3 30 30 H 1.09000 * 109.88159 * 21.31205 * 4 2 1 31 31 H 1.09002 * 110.01148 * 260.22343 * 4 2 1 32 32 H 0.96996 * 120.00068 * 356.68804 * 8 6 5 33 33 H 1.08000 * 119.92168 * 0.02562 * 10 9 8 34 34 H 1.08000 * 120.08329 * 180.25502 * 11 10 9 35 35 H 0.97002 * 119.99549 * 180.02562 * 16 15 13 36 36 H 1.08002 * 120.08644 * 179.97438 * 21 12 11 37 37 H 1.08004 * 119.91373 * 180.02562 * 22 21 12 38 38 H 1.08991 * 110.36690 * 94.70739 * 23 5 4 39 39 H 1.08997 * 110.36712 * 216.92353 * 23 5 4 40 40 H 0.96697 * 114.00060 * 298.54853 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7893 1.2084 5 7 3.2471 -1.5463 0.7423 6 6 3.9951 -2.3778 1.4942 7 8 3.7198 -2.5514 2.6656 8 7 5.0488 -3.0162 0.9479 9 6 5.8625 -3.8214 1.7407 10 6 7.2396 -3.8467 1.5202 11 6 8.0435 -4.6291 2.2958 12 6 7.4784 -5.4212 3.3145 13 6 8.3032 -6.2382 4.1176 14 1 7.9623 -6.5585 5.0910 15 6 9.5622 -6.6329 3.6525 16 7 9.7553 -6.8286 2.3729 17 14 10.9676 -6.8804 4.8578 18 1 11.0495 -8.3144 5.2349 19 1 12.2433 -6.4618 4.2234 20 1 10.7273 -6.0619 6.0733 21 6 6.0862 -5.3943 3.5275 22 6 5.2957 -4.6033 2.7470 23 6 3.4674 -1.2454 -0.6841 24 6 2.0834 -0.7957 -1.2154 25 1 2.1904 -0.1534 -2.0895 26 8 1.2563 -1.9234 -1.5091 27 1 -0.3633 0.4873 0.9049 28 1 -0.3634 0.5399 -0.8743 29 1 -0.3634 -1.0272 -0.0304 30 1 1.3141 -1.4756 1.5778 31 1 2.3707 -0.1014 2.0009 32 1 5.2403 -2.9148 0.0024 33 1 7.6708 -3.2419 0.7363 34 1 9.1100 -4.6446 2.1267 35 1 10.6282 -7.1026 2.0505 36 1 5.6459 -5.9992 4.3064 37 1 4.2282 -4.5813 2.9094 38 1 4.1954 -0.4418 -0.7942 39 1 3.8049 -2.1372 -1.2121 40 1 1.6134 -2.5054 -2.1938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352060603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:13 Heat of formation + Delta-G solvation = -73.918619 kcal Electronic energy + Delta-G solvation = -22636.059572 eV Core-core repulsion = 19221.583827 eV Total energy + Delta-G solvation = -3414.475745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.64324 -39.98567 -38.83265 -36.32905 -36.07202 -34.89229 -33.52884 -31.47227 -30.82339 -29.83251 -27.74638 -26.30045 -24.21239 -23.25693 -22.55493 -21.18764 -20.88032 -19.48942 -19.17614 -18.56008 -17.57531 -17.04251 -16.99036 -16.43935 -15.81054 -15.67026 -15.44570 -14.98102 -14.62203 -14.50922 -14.36839 -13.98855 -13.84584 -13.68104 -13.44293 -13.25738 -13.11447 -12.83397 -12.67706 -12.37218 -12.32139 -11.96534 -11.90906 -11.60240 -11.50121 -11.36239 -11.05625 -10.86884 -10.52474 -9.68224 -9.48715 -8.97728 -8.70968 -6.22761 0.85285 1.12630 1.38138 1.44406 1.55625 1.64027 2.14188 2.21023 2.65538 3.06459 3.23659 3.48269 3.62945 3.70542 3.93558 4.21995 4.37079 4.45679 4.48207 4.54806 4.63170 4.67281 4.76953 4.86014 4.88780 5.07319 5.09293 5.14253 5.15493 5.23866 5.34579 5.44018 5.51078 5.62184 5.79044 6.02650 6.11071 6.16717 6.35960 6.61544 6.89094 6.90820 6.99618 7.01397 7.62388 8.21168 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.045804 B = 0.003000 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.156332 B = 9332.086145 C = 9588.583425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 H 0.121 0.879 4 C 0.127 3.873 5 N -0.632 5.632 6 C 0.706 3.294 7 O -0.629 6.629 8 N -0.654 5.654 9 C 0.009 3.991 10 C -0.099 4.099 11 C -0.187 4.187 12 C 0.084 3.916 13 C -0.506 4.506 14 H 0.074 0.926 15 C 0.053 3.947 16 N -0.798 5.798 17 Si 0.972 3.028 18 H -0.260 1.260 19 H -0.259 1.259 20 H -0.263 1.263 21 C -0.244 4.244 22 C -0.078 4.078 23 C 0.058 3.942 24 C 0.103 3.897 25 H 0.119 0.881 26 O -0.573 6.573 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.409 0.591 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.295 0.705 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.743 13.437 -12.931 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.107 4.107 3 H 0.139 0.861 4 C 0.004 3.996 5 N -0.370 5.370 6 C 0.409 3.591 7 O -0.510 6.510 8 N -0.302 5.302 9 C -0.085 4.085 10 C -0.119 4.119 11 C -0.207 4.207 12 C 0.081 3.919 13 C -0.533 4.533 14 H 0.092 0.908 15 C -0.167 4.167 16 N -0.421 5.421 17 Si 0.792 3.208 18 H -0.184 1.184 19 H -0.183 1.183 20 H -0.187 1.187 21 C -0.264 4.264 22 C -0.098 4.098 23 C -0.064 4.064 24 C 0.043 3.957 25 H 0.137 0.863 26 O -0.381 6.381 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.246 0.754 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.135 13.468 -11.813 20.583 hybrid contribution 0.984 -0.809 0.030 1.275 sum -9.151 12.659 -11.784 19.566 Atomic orbital electron populations 1.21528 0.92662 1.02054 1.02568 1.22450 0.97710 0.99174 0.91407 0.86092 1.21950 0.86009 0.93732 0.97943 1.47467 1.31151 1.46314 1.12081 1.15729 0.80418 0.78981 0.84013 1.90874 1.73253 1.69470 1.17441 1.41789 1.28320 1.48318 1.11755 1.16909 0.89329 1.01274 1.00949 1.20396 0.91044 1.00105 1.00349 1.20641 0.98420 1.00984 1.00614 1.17892 0.91407 0.91055 0.91529 1.19689 1.01242 1.29117 1.03273 0.90826 1.26720 1.01718 0.91160 0.97109 1.69944 1.25802 1.29201 1.17168 0.85363 0.76671 0.79603 0.79139 1.18406 1.18324 1.18687 1.20705 0.93832 1.06695 1.05187 1.20400 0.98046 0.94934 0.96422 1.23440 1.00273 1.02525 0.80196 1.23099 0.86897 0.88077 0.97613 0.86327 1.86498 1.49243 1.39322 1.63035 0.92172 0.90500 0.93430 0.93816 0.92523 0.75402 0.85765 0.88058 0.89435 0.89151 0.88722 0.88496 0.89554 0.75496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.85 71.98 0.64 -1.19 16 2 C -0.09 -1.28 3.47 -9.50 -0.03 -1.31 16 3 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 4 C 0.13 3.13 6.46 86.73 0.56 3.69 16 5 N -0.63 -17.52 3.33 -829.78 -2.76 -20.28 16 6 C 0.71 27.50 8.30 179.06 1.49 28.98 16 7 O -0.63 -31.09 14.29 -3.97 -0.06 -31.14 16 8 N -0.65 -24.23 5.26 -316.80 -1.66 -25.90 16 9 C 0.01 0.42 6.25 38.56 0.24 0.66 16 10 C -0.10 -4.56 9.90 22.14 0.22 -4.34 16 11 C -0.19 -9.86 8.74 22.48 0.20 -9.66 16 12 C 0.08 4.76 5.57 -21.28 -0.12 4.64 16 13 C -0.51 -28.18 8.94 23.39 0.21 -27.97 16 14 H 0.07 4.05 8.02 -2.91 -0.02 4.02 16 15 C 0.05 2.65 4.77 85.24 0.41 3.05 16 16 N -0.80 -40.80 11.78 21.82 0.26 -40.55 16 17 Si 0.97 37.84 29.66 68.60 2.03 39.87 16 18 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 19 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 21 C -0.24 -13.52 9.74 22.48 0.22 -13.30 16 22 C -0.08 -4.07 8.59 22.13 0.19 -3.88 16 23 C 0.06 0.92 6.33 86.86 0.55 1.46 16 24 C 0.10 1.22 4.19 32.09 0.13 1.35 16 25 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 26 O -0.57 -8.64 12.14 -148.98 -1.81 -10.45 16 27 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.89 7.33 -2.39 -0.02 0.87 16 30 H 0.04 1.28 7.82 -2.39 -0.02 1.26 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.41 11.55 7.28 -92.71 -0.67 10.88 16 33 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 34 H 0.10 5.38 6.53 -2.91 -0.02 5.36 16 35 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 36 H 0.09 4.86 8.06 -2.91 -0.02 4.84 16 37 H 0.09 5.06 6.45 -2.91 -0.02 5.04 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.18 7.24 -2.39 -0.02 1.17 16 40 H 0.39 2.99 9.11 -74.06 -0.67 2.32 16 Total: -1.00 -75.28 330.90 0.62 -74.65 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -0.28 Total: 31.61 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 4.90 Total: -17.82 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -4.17 Total: -86.72 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -1.87 Total: -41.59 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -75.28 0.62 -74.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352060603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.735 kcal (2) G-P(sol) polarization free energy of solvation -75.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds