Wall clock time and date at job start Tue Mar 31 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99647 * 2 1 4 4 O 1.42899 * 109.47171 * 134.99821 * 3 2 1 5 5 C 1.42904 * 114.00016 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47312 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99980 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00316 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99832 * 0.02562 * 8 6 5 10 10 C 1.50701 * 109.47314 * 252.76453 * 9 8 6 11 11 H 1.08004 * 119.99996 * 234.31038 * 10 9 8 12 12 C 1.37882 * 119.99801 * 54.29986 * 10 9 8 13 13 N 1.31507 * 119.99925 * 4.83705 * 12 10 9 14 14 Si 1.86800 * 119.99809 * 184.82707 * 12 10 9 15 15 H 1.48503 * 109.46919 * 60.00351 * 14 12 10 16 16 H 1.48498 * 109.46874 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47187 * 300.00598 * 14 12 10 18 18 C 1.46500 * 120.00282 * 180.02562 * 8 6 5 19 19 C 1.50701 * 109.47190 * 274.72653 * 18 8 6 20 20 C 1.38672 * 120.42005 * 274.86461 * 19 18 8 21 21 C 1.38624 * 118.42259 * 179.78440 * 20 19 18 22 22 C 1.38230 * 119.15822 * 0.51085 * 21 20 19 23 23 N 1.31849 * 120.76571 * 359.72394 * 22 21 20 24 24 C 1.31884 * 121.72724 * 0.02562 * 23 22 21 25 25 H 1.08003 * 119.99456 * 180.02562 * 1 2 3 26 26 H 1.07993 * 120.00490 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.00490 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47179 * 14.99697 * 3 2 1 29 29 H 1.09004 * 109.47127 * 254.99987 * 3 2 1 30 30 H 1.09003 * 109.46656 * 60.00237 * 5 4 3 31 31 H 1.09000 * 109.47348 * 300.00423 * 5 4 3 32 32 H 1.09002 * 109.47286 * 132.76520 * 9 8 6 33 33 H 1.08999 * 109.47220 * 12.76420 * 9 8 6 34 34 H 0.96998 * 119.99772 * 175.00230 * 13 12 10 35 35 H 1.09001 * 109.47078 * 34.72540 * 18 8 6 36 36 H 1.08999 * 109.47206 * 154.72321 * 18 8 6 37 37 H 1.08000 * 120.78546 * 0.02562 * 20 19 18 38 38 H 1.07999 * 120.42163 * 180.21762 * 21 20 19 39 39 H 1.07998 * 119.61880 * 179.75087 * 22 21 20 40 40 H 1.07993 * 119.62216 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1266 1.2415 0.9527 5 6 3.9083 2.4351 1.0321 6 6 4.9945 2.2568 2.0612 7 8 5.0903 1.2103 2.6668 8 7 5.8597 3.2601 2.3088 9 6 5.7437 4.5244 1.5777 10 6 6.8657 4.6309 0.5772 11 1 7.5115 5.4966 0.5802 12 6 7.0679 3.6231 -0.3417 13 7 6.2258 2.6152 -0.4082 14 14 8.5378 3.6896 -1.4925 15 1 9.7905 3.7045 -0.6950 16 1 8.5280 2.4971 -2.3774 17 1 8.4633 4.9203 -2.3202 18 6 6.9160 3.0866 3.3089 19 6 6.3737 3.4184 4.6752 20 6 6.3562 4.7303 5.1241 21 6 5.8440 4.9891 6.3859 22 6 5.3807 3.9370 7.1536 23 7 5.4173 2.7010 6.6961 24 6 5.8931 2.4183 5.4989 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3854 2.1162 0.2659 29 1 2.4755 1.4869 -0.9927 30 1 3.2687 3.2698 1.3192 31 1 4.3586 2.6399 0.0608 32 1 5.8023 5.3565 2.2793 33 1 4.7873 4.5559 1.0558 34 1 6.3263 1.9442 -1.1014 35 1 7.2619 2.0529 3.2964 36 1 7.7485 3.7510 3.0772 37 1 6.7293 5.5318 4.5038 38 1 5.8116 5.9994 6.7664 39 1 4.9838 4.1297 8.1393 40 1 5.9073 1.3936 5.1584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354793747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:34 Heat of formation + Delta-G solvation = -17.005131 kcal Electronic energy + Delta-G solvation = -23308.948122 eV Core-core repulsion = 19896.940331 eV Total energy + Delta-G solvation = -3412.007791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.89466 -38.60894 -36.98186 -34.95057 -33.53553 -33.00336 -31.84785 -31.15002 -27.94884 -27.65454 -25.74557 -24.36564 -23.29253 -22.78967 -21.61438 -19.81786 -18.30457 -16.93772 -16.64160 -16.44464 -15.94676 -15.56161 -15.31929 -15.01828 -14.85834 -14.66831 -14.15170 -13.80753 -13.32792 -13.14005 -12.75878 -12.66940 -12.43538 -12.36696 -11.94213 -11.66899 -11.40623 -11.23406 -11.05685 -10.93286 -10.86530 -10.52781 -10.01803 -9.95607 -9.50606 -9.44337 -9.13614 -8.90774 -8.83439 -8.69413 -8.33340 -7.39311 -6.25908 -4.48714 1.43223 1.61180 2.33939 3.14150 3.23034 3.23444 3.83559 3.98650 4.18330 4.26206 4.74208 4.78991 5.05875 5.10735 5.29823 5.31358 5.34485 5.39522 5.46507 5.71229 5.75550 5.81573 5.96609 5.97258 6.11158 6.15091 6.28866 6.38094 6.47879 6.58134 6.70882 6.72981 6.83509 6.92747 6.99382 7.07223 7.50502 7.71634 7.86948 7.94840 8.30636 8.55387 8.76210 9.25116 9.51888 10.68622 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.009320 B = 0.006944 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.560839 B = 4031.317579 C = 6488.972981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 C 0.089 3.911 4 O -0.369 6.369 5 C 0.033 3.967 6 C 0.554 3.446 7 O -0.572 6.572 8 N -0.578 5.578 9 C 0.227 3.773 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.078 3.922 13 N -0.877 5.877 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.276 1.276 18 C 0.169 3.831 19 C -0.140 4.140 20 C -0.065 4.065 21 C -0.182 4.182 22 C 0.084 3.916 23 N -0.492 5.492 24 C 0.119 3.881 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.146 0.854 32 H 0.024 0.976 33 H 0.041 0.959 34 H 0.271 0.729 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.148 0.852 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 3.332 4.108 6.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.152 4.152 3 C 0.012 3.988 4 O -0.288 6.288 5 C -0.045 4.045 6 C 0.343 3.657 7 O -0.452 6.452 8 N -0.310 5.310 9 C 0.107 3.893 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.126 4.126 13 N -0.514 5.514 14 Si 0.728 3.272 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C 0.045 3.955 19 C -0.143 4.143 20 C -0.091 4.091 21 C -0.202 4.202 22 C -0.073 4.073 23 N -0.201 5.201 24 C -0.038 4.038 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.133 0.867 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.163 0.837 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.462 1.772 4.975 6.914 hybrid contribution 1.009 1.054 -1.477 2.076 sum -3.453 2.826 3.498 5.670 Atomic orbital electron populations 1.23723 0.95558 1.01761 1.02414 1.22848 0.95512 0.98730 0.98128 1.21433 0.89253 0.94821 0.93312 1.87909 1.44038 1.37340 1.59495 1.23180 0.91418 0.85408 1.04518 1.19737 0.81983 0.82979 0.80983 1.90531 1.74588 1.27930 1.52196 1.48204 1.29105 1.16371 1.37273 1.19371 0.98021 0.81267 0.90604 1.21509 1.15941 1.05217 1.15409 0.91907 1.25023 0.96456 0.94452 0.96716 1.69424 1.35890 1.12639 1.33472 0.86518 0.82794 0.77572 0.80332 1.20060 1.21072 1.20146 1.19888 0.90669 1.02476 0.82489 1.21624 1.00092 0.94094 0.98488 1.21556 0.95885 0.96589 0.95092 1.22055 1.01840 1.00426 0.95863 1.22662 0.96811 0.88310 0.99532 1.67706 1.14852 1.22238 1.15264 1.22892 0.92033 1.00332 0.88498 0.88220 0.88686 0.86715 0.93646 0.92367 0.94012 0.83749 0.95802 0.94143 0.91867 0.90491 0.89443 0.84892 0.85360 0.83495 0.82358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.43 14.31 29.01 0.42 -2.02 16 2 C -0.13 -2.01 9.89 -36.02 -0.36 -2.36 16 3 C 0.09 1.51 6.35 36.01 0.23 1.74 16 4 O -0.37 -8.14 9.86 -55.14 -0.54 -8.68 16 5 C 0.03 0.74 4.53 36.00 0.16 0.90 16 6 C 0.55 13.39 6.42 -10.99 -0.07 13.32 16 7 O -0.57 -15.20 15.61 -14.36 -0.22 -15.42 16 8 N -0.58 -12.77 2.11 -176.43 -0.37 -13.14 16 9 C 0.23 4.91 5.65 -5.19 -0.03 4.88 16 10 C -0.54 -12.73 9.11 -34.44 -0.31 -13.04 16 11 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 12 C 0.08 1.87 5.33 -17.82 -0.10 1.78 16 13 N -0.88 -21.85 8.26 55.43 0.46 -21.39 16 14 Si 0.90 19.29 29.54 -169.99 -5.02 14.27 16 15 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 C 0.17 3.36 5.43 -5.19 -0.03 3.33 16 19 C -0.14 -2.50 5.44 -104.48 -0.57 -3.07 16 20 C -0.06 -0.99 9.88 -39.28 -0.39 -1.38 16 21 C -0.18 -2.46 10.11 -39.44 -0.40 -2.85 16 22 C 0.08 1.22 11.18 -17.55 -0.20 1.03 16 23 N -0.49 -8.73 10.36 -13.25 -0.14 -8.87 16 24 C 0.12 2.23 10.67 -17.55 -0.19 2.04 16 25 H 0.10 1.04 8.06 -52.48 -0.42 0.61 16 26 H 0.09 1.06 7.90 -52.49 -0.41 0.65 16 27 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.05 0.70 7.86 -51.93 -0.41 0.29 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.04 0.85 7.55 -51.93 -0.39 0.46 16 31 H 0.15 3.38 4.95 -51.93 -0.26 3.13 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.89 5.92 -51.93 -0.31 0.58 16 34 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16 35 H 0.08 1.62 7.49 -51.93 -0.39 1.23 16 36 H 0.09 1.65 7.79 -51.93 -0.40 1.25 16 37 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.16 3.11 7.68 -52.49 -0.40 2.71 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -28.90 341.21 -8.01 -36.91 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.48 Total: 6.90 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -1.83 Total: 4.29 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.05 Total: -43.40 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.77 Total: -24.11 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.90 -8.01 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354793747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.901 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds