Wall clock time and date at job start Tue Mar 31 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99647 * 2 1 4 4 O 1.42899 * 109.47171 * 134.99821 * 3 2 1 5 5 C 1.42904 * 114.00016 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47312 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99980 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00316 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99832 * 0.02562 * 8 6 5 10 10 C 1.50701 * 109.47314 * 252.76453 * 9 8 6 11 11 H 1.08004 * 119.99996 * 234.31038 * 10 9 8 12 12 C 1.37882 * 119.99801 * 54.29986 * 10 9 8 13 13 N 1.31507 * 119.99925 * 4.83705 * 12 10 9 14 14 Si 1.86800 * 119.99809 * 184.82707 * 12 10 9 15 15 H 1.48503 * 109.46919 * 60.00351 * 14 12 10 16 16 H 1.48498 * 109.46874 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47187 * 300.00598 * 14 12 10 18 18 C 1.46500 * 120.00282 * 180.02562 * 8 6 5 19 19 C 1.50701 * 109.47190 * 274.72653 * 18 8 6 20 20 C 1.38672 * 120.42005 * 274.86461 * 19 18 8 21 21 C 1.38624 * 118.42259 * 179.78440 * 20 19 18 22 22 C 1.38230 * 119.15822 * 0.51085 * 21 20 19 23 23 N 1.31849 * 120.76571 * 359.72394 * 22 21 20 24 24 C 1.31884 * 121.72724 * 0.02562 * 23 22 21 25 25 H 1.08003 * 119.99456 * 180.02562 * 1 2 3 26 26 H 1.07993 * 120.00490 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.00490 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47179 * 14.99697 * 3 2 1 29 29 H 1.09004 * 109.47127 * 254.99987 * 3 2 1 30 30 H 1.09003 * 109.46656 * 60.00237 * 5 4 3 31 31 H 1.09000 * 109.47348 * 300.00423 * 5 4 3 32 32 H 1.09002 * 109.47286 * 132.76520 * 9 8 6 33 33 H 1.08999 * 109.47220 * 12.76420 * 9 8 6 34 34 H 0.96998 * 119.99772 * 175.00230 * 13 12 10 35 35 H 1.09001 * 109.47078 * 34.72540 * 18 8 6 36 36 H 1.08999 * 109.47206 * 154.72321 * 18 8 6 37 37 H 1.08000 * 120.78546 * 0.02562 * 20 19 18 38 38 H 1.07999 * 120.42163 * 180.21762 * 21 20 19 39 39 H 1.07998 * 119.61880 * 179.75087 * 22 21 20 40 40 H 1.07993 * 119.62216 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1266 1.2415 0.9527 5 6 3.9083 2.4351 1.0321 6 6 4.9945 2.2568 2.0612 7 8 5.0903 1.2103 2.6668 8 7 5.8597 3.2601 2.3088 9 6 5.7437 4.5244 1.5777 10 6 6.8657 4.6309 0.5772 11 1 7.5115 5.4966 0.5802 12 6 7.0679 3.6231 -0.3417 13 7 6.2258 2.6152 -0.4082 14 14 8.5378 3.6896 -1.4925 15 1 9.7905 3.7045 -0.6950 16 1 8.5280 2.4971 -2.3774 17 1 8.4633 4.9203 -2.3202 18 6 6.9160 3.0866 3.3089 19 6 6.3737 3.4184 4.6752 20 6 6.3562 4.7303 5.1241 21 6 5.8440 4.9891 6.3859 22 6 5.3807 3.9370 7.1536 23 7 5.4173 2.7010 6.6961 24 6 5.8931 2.4183 5.4989 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3854 2.1162 0.2659 29 1 2.4755 1.4869 -0.9927 30 1 3.2687 3.2698 1.3192 31 1 4.3586 2.6399 0.0608 32 1 5.8023 5.3565 2.2793 33 1 4.7873 4.5559 1.0558 34 1 6.3263 1.9442 -1.1014 35 1 7.2619 2.0529 3.2964 36 1 7.7485 3.7510 3.0772 37 1 6.7293 5.5318 4.5038 38 1 5.8116 5.9994 6.7664 39 1 4.9838 4.1297 8.1393 40 1 5.9073 1.3936 5.1584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354793747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:34 Heat of formation + Delta-G solvation = -32.576108 kcal Electronic energy + Delta-G solvation = -23309.623330 eV Core-core repulsion = 19896.940331 eV Total energy + Delta-G solvation = -3412.682999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26197 -40.28590 -38.53845 -36.75319 -34.87081 -34.53013 -33.29202 -32.53602 -29.58643 -29.35901 -27.14068 -25.85691 -24.83829 -24.30395 -22.97957 -20.99822 -20.02211 -18.60030 -18.18985 -17.85639 -17.35491 -17.17314 -16.84677 -16.65917 -16.38146 -16.18049 -15.57570 -15.29936 -14.67780 -14.50668 -14.30730 -14.05598 -13.93899 -13.79575 -13.66566 -13.09858 -12.99852 -12.86372 -12.63882 -12.55253 -12.44667 -11.85947 -11.76302 -11.72966 -10.85759 -10.76041 -10.62511 -10.45050 -10.35529 -10.19660 -9.86860 -9.15447 -8.09280 -6.36900 0.18118 0.38136 1.24106 1.43288 1.47904 1.52903 2.06993 2.36954 2.40068 2.94074 3.08652 3.41381 3.57478 3.92228 3.97147 4.06808 4.13820 4.16607 4.17276 4.31194 4.34642 4.49073 4.56468 4.63137 4.78815 4.85760 4.86323 4.92104 4.98663 5.16025 5.20298 5.25757 5.43294 5.64262 5.68997 5.73424 5.83929 5.95482 6.11167 6.34802 6.70602 6.97596 7.05774 7.38757 7.69461 8.81526 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.009320 B = 0.006944 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.560839 B = 4031.317579 C = 6488.972981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.173 4.173 3 C 0.084 3.916 4 O -0.399 6.399 5 C 0.041 3.959 6 C 0.541 3.459 7 O -0.608 6.608 8 N -0.574 5.574 9 C 0.226 3.774 10 C -0.548 4.548 11 H 0.069 0.931 12 C 0.038 3.962 13 N -0.895 5.895 14 Si 0.952 3.048 15 H -0.277 1.277 16 H -0.295 1.295 17 H -0.267 1.267 18 C 0.172 3.828 19 C -0.152 4.152 20 C -0.065 4.065 21 C -0.164 4.164 22 C 0.083 3.917 23 N -0.516 5.516 24 C 0.098 3.902 25 H 0.124 0.876 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.135 0.865 32 H 0.049 0.951 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.153 0.847 38 H 0.174 0.826 39 H 0.186 0.814 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 5.769 4.978 9.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.191 4.191 3 C 0.008 3.992 4 O -0.319 6.319 5 C -0.037 4.037 6 C 0.331 3.669 7 O -0.492 6.492 8 N -0.304 5.304 9 C 0.106 3.894 10 C -0.586 4.586 11 H 0.087 0.913 12 C -0.164 4.164 13 N -0.533 5.533 14 Si 0.779 3.221 15 H -0.202 1.202 16 H -0.221 1.221 17 H -0.192 1.192 18 C 0.048 3.952 19 C -0.155 4.155 20 C -0.091 4.091 21 C -0.183 4.183 22 C -0.074 4.074 23 N -0.225 5.225 24 C -0.058 4.058 25 H 0.142 0.858 26 H 0.129 0.871 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.170 0.830 38 H 0.192 0.808 39 H 0.203 0.797 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.309 4.242 5.837 8.958 hybrid contribution 1.194 0.355 -1.670 2.084 sum -4.115 4.596 4.167 7.444 Atomic orbital electron populations 1.24035 0.94430 1.03654 0.97802 1.22752 0.96524 0.97429 1.02391 1.21675 0.88451 0.96792 0.92264 1.87877 1.45367 1.37514 1.61108 1.23001 0.91338 0.86166 1.03200 1.20208 0.82751 0.82861 0.81106 1.90500 1.75708 1.29335 1.53618 1.48224 1.28826 1.16045 1.37307 1.19423 0.97346 0.81656 0.90938 1.21775 1.16260 1.05123 1.15458 0.91330 1.25620 0.98175 0.94479 0.98136 1.69583 1.36987 1.13024 1.33710 0.85703 0.80354 0.77273 0.78785 1.20225 1.22146 1.19180 1.19868 0.90516 1.01216 0.83576 1.21341 1.01529 0.95428 0.97252 1.21817 0.95520 0.95525 0.96269 1.22501 0.99160 1.02229 0.94401 1.23382 0.95678 0.87359 1.01016 1.67675 1.15575 1.24480 1.14817 1.22550 0.93995 0.99563 0.89673 0.85841 0.87082 0.87691 0.91868 0.92535 0.92388 0.84845 0.93257 0.94589 0.92677 0.93072 0.88554 0.82981 0.80847 0.79742 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 14.31 67.78 0.97 -2.67 16 2 C -0.17 -5.14 9.89 25.65 0.25 -4.89 16 3 C 0.08 2.90 6.35 71.24 0.45 3.35 16 4 O -0.40 -18.20 9.86 -129.94 -1.28 -19.48 16 5 C 0.04 1.89 4.53 71.23 0.32 2.22 16 6 C 0.54 27.05 6.42 87.66 0.56 27.62 16 7 O -0.61 -34.12 15.61 15.98 0.25 -33.87 16 8 N -0.57 -25.70 2.11 -830.50 -1.75 -27.46 16 9 C 0.23 9.59 5.65 85.63 0.48 10.07 16 10 C -0.55 -25.23 9.11 25.60 0.23 -24.99 16 11 H 0.07 3.04 7.82 -2.91 -0.02 3.01 16 12 C 0.04 1.81 5.33 84.66 0.45 2.26 16 13 N -0.89 -45.58 8.26 21.45 0.18 -45.40 16 14 Si 0.95 39.57 29.54 68.60 2.03 41.60 16 15 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.30 -12.67 7.11 99.48 0.71 -11.97 16 17 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 18 C 0.17 7.00 5.43 85.63 0.46 7.47 16 19 C -0.15 -5.44 5.44 -19.77 -0.11 -5.55 16 20 C -0.06 -1.82 9.88 22.47 0.22 -1.60 16 21 C -0.16 -3.73 10.11 22.36 0.23 -3.51 16 22 C 0.08 2.16 11.18 84.69 0.95 3.11 16 23 N -0.52 -18.06 10.36 -195.85 -2.03 -20.09 16 24 C 0.10 3.80 10.67 84.67 0.90 4.70 16 25 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 26 H 0.11 2.14 7.90 -2.91 -0.02 2.12 16 27 H 0.11 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.06 1.90 7.86 -2.39 -0.02 1.88 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 2.38 7.55 -2.39 -0.02 2.36 16 31 H 0.13 6.44 4.95 -2.39 -0.01 6.43 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.56 5.92 -2.39 -0.01 1.55 16 34 H 0.26 13.46 8.32 -92.71 -0.77 12.69 16 35 H 0.05 2.30 7.49 -2.39 -0.02 2.29 16 36 H 0.10 3.65 7.79 -2.39 -0.02 3.63 16 37 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 38 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.13 5.61 7.68 -2.91 -0.02 5.59 16 Total: -1.00 -64.62 341.21 4.80 -59.82 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 1.03 Total: 27.30 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 6.39 Total: 17.58 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -3.60 Total: -92.95 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -1.03 Total: -53.35 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -64.62 4.80 -59.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354793747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.242 kcal (2) G-P(sol) polarization free energy of solvation -64.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds