Wall clock time and date at job start Tue Mar 31 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50694 * 120.00521 * 2 1 4 4 O 1.42899 * 109.47517 * 134.99834 * 3 2 1 5 5 C 1.35893 * 117.00392 * 180.02562 * 4 3 2 6 6 C 1.38736 * 120.05957 * 180.02562 * 5 4 3 7 7 C 1.38138 * 119.94337 * 180.30421 * 6 5 4 8 8 C 1.38271 * 120.05803 * 359.41293 * 7 6 5 9 9 C 1.50698 * 119.94467 * 180.30180 * 8 7 6 10 10 N 1.46501 * 109.47469 * 270.30588 * 9 8 7 11 11 C 1.34773 * 120.00321 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99689 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00512 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00049 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46812 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00112 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00003 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99914 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00228 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46990 * 90.00191 * 19 17 15 21 21 H 1.48496 * 109.47147 * 210.00364 * 19 17 15 22 22 H 1.48498 * 109.47108 * 330.00267 * 19 17 15 23 23 C 1.38259 * 120.10889 * 0.60974 * 8 7 6 24 24 C 1.38146 * 120.05909 * 359.67363 * 23 8 7 25 25 H 1.07994 * 119.99354 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99999 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.99903 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46946 * 15.00182 * 3 2 1 29 29 H 1.09001 * 109.47141 * 254.99940 * 3 2 1 30 30 H 1.08002 * 120.02291 * 0.02562 * 6 5 4 31 31 H 1.08004 * 119.96766 * 179.69880 * 7 6 5 32 32 H 1.09000 * 109.47353 * 30.30435 * 9 8 7 33 33 H 1.09002 * 109.47057 * 150.30403 * 9 8 7 34 34 H 0.97002 * 120.00028 * 359.97438 * 10 9 8 35 35 H 0.96995 * 119.99458 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.47428 * 299.99296 * 14 13 11 37 37 H 1.08996 * 109.47404 * 60.00070 * 14 13 11 38 38 H 0.97002 * 119.99732 * 180.02562 * 18 17 15 39 39 H 1.08006 * 119.97147 * 179.69573 * 23 8 7 40 40 H 1.07993 * 120.03340 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9092 2.3451 1.0790 6 6 4.9600 2.3521 1.9848 7 6 5.7499 3.4778 2.1157 8 6 5.5016 4.5926 1.3363 9 6 6.3692 5.8168 1.4763 10 7 5.8050 6.7008 2.4993 11 6 6.4169 7.8643 2.7964 12 8 7.4374 8.1801 2.2157 13 7 5.8976 8.6779 3.7372 14 6 6.5630 9.9423 4.0604 15 6 5.7860 10.6584 5.1350 16 1 4.8863 10.2161 5.5366 17 6 6.2238 11.8782 5.6054 18 7 7.3192 12.4171 5.1160 19 14 5.2603 12.7662 6.9368 20 1 5.7624 12.3512 8.2714 21 1 5.4319 14.2326 6.7774 22 1 3.8208 12.4208 6.8201 23 6 4.4548 4.5882 0.4332 24 6 3.6582 3.4672 0.3026 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3857 2.1160 0.2660 29 1 2.4756 1.4866 -0.9926 30 1 5.1574 1.4798 2.5902 31 1 6.5651 3.4854 2.8242 32 1 7.3754 5.5174 1.7697 33 1 6.4104 6.3439 0.5232 34 1 4.9907 6.4491 2.9623 35 1 5.0833 8.4261 4.2001 36 1 7.5736 9.7406 4.4156 37 1 6.6092 10.5670 3.1685 38 1 7.6273 13.2752 5.4472 39 1 4.2598 5.4620 -0.1710 40 1 2.8409 3.4641 -0.4033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355637893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:29 Heat of formation + Delta-G solvation = -27.675380 kcal Electronic energy + Delta-G solvation = -21185.200905 eV Core-core repulsion = 17772.730418 eV Total energy + Delta-G solvation = -3412.470488 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51564 -39.19237 -38.02721 -34.88042 -34.27695 -33.83484 -32.27872 -31.30652 -30.52702 -27.53846 -26.92582 -25.16107 -23.04202 -22.48549 -21.33314 -20.42176 -20.12271 -18.53457 -18.09978 -16.81330 -16.31670 -16.25304 -15.68063 -15.31582 -15.03893 -14.68713 -14.58130 -14.44000 -13.83842 -13.72643 -13.48317 -13.16246 -13.02893 -12.80238 -12.56598 -11.93883 -11.69556 -11.62258 -11.56991 -11.46032 -11.05307 -10.92913 -10.85505 -10.27406 -10.03792 -9.42514 -9.33664 -9.24791 -8.74083 -8.63327 -8.39912 -7.70976 -6.12392 -4.18730 1.07566 1.11693 1.54010 2.96098 3.26772 3.28089 3.33263 3.36118 3.78418 4.00386 4.28538 4.36148 4.48972 4.55721 4.63343 4.67295 4.77120 4.90846 5.11309 5.15106 5.21146 5.23566 5.29139 5.39690 5.60483 5.82340 5.87020 5.98161 6.01287 6.04438 6.09892 6.45656 6.50059 6.89880 7.08465 7.17366 7.56126 7.59756 7.61278 7.95287 8.08657 8.80393 8.99230 9.37659 9.52209 10.97835 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.002278 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.252292 B =12287.366881 C =12982.663459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.157 4.157 3 C 0.086 3.914 4 O -0.313 6.313 5 C 0.131 3.869 6 C -0.154 4.154 7 C -0.059 4.059 8 C -0.137 4.137 9 C 0.186 3.814 10 N -0.754 5.754 11 C 0.692 3.308 12 O -0.602 6.602 13 N -0.730 5.730 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.059 4.059 24 C -0.212 4.212 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.392 0.608 35 H 0.386 0.614 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.265 0.735 39 H 0.128 0.872 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.099 -24.614 -10.205 29.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.011 3.989 4 O -0.227 6.227 5 C 0.086 3.914 6 C -0.172 4.172 7 C -0.078 4.078 8 C -0.138 4.138 9 C 0.062 3.938 10 N -0.412 5.412 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.382 5.382 14 C 0.145 3.855 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.077 4.077 24 C -0.231 4.231 25 H 0.118 0.882 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.225 0.775 35 H 0.218 0.782 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.985 -24.269 -10.626 28.681 hybrid contribution -1.370 0.408 0.940 1.711 sum -12.355 -23.861 -9.686 28.563 Atomic orbital electron populations 1.23911 0.95433 1.02682 0.98717 1.22668 0.95669 0.97773 1.01414 1.21834 0.87906 0.96892 0.92233 1.86078 1.42141 1.35848 1.58599 1.19038 0.91274 0.85884 0.95211 1.20430 0.95959 1.00059 1.00783 1.20974 0.98155 0.91471 0.97185 1.19916 0.98573 0.96200 0.99125 1.19838 0.95241 0.86646 0.92125 1.45233 1.30700 1.21251 1.44024 1.16165 0.83495 0.79949 0.81185 1.90873 1.25747 1.75462 1.56058 1.45713 1.29667 1.23030 1.39774 1.18976 0.92930 0.77866 0.95688 1.21237 1.10641 1.04732 1.21347 0.91966 1.24951 0.95151 0.97044 0.96947 1.69986 1.22038 1.18103 1.42166 0.86410 0.80062 0.78769 0.81611 1.20497 1.21039 1.19812 1.20935 0.92967 0.97269 0.96577 1.21223 1.03729 0.94314 1.03799 0.88154 0.87379 0.86232 0.91351 0.90949 0.85090 0.84896 0.91153 0.91242 0.77521 0.78184 0.95738 0.95748 0.92498 0.85371 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 14.31 29.01 0.42 -0.40 16 2 C -0.16 -0.94 9.89 -36.03 -0.36 -1.29 16 3 C 0.09 0.59 5.15 36.00 0.19 0.77 16 4 O -0.31 -3.02 10.12 -19.40 -0.20 -3.22 16 5 C 0.13 1.32 6.69 -39.21 -0.26 1.05 16 6 C -0.15 -1.51 9.99 -39.43 -0.39 -1.91 16 7 C -0.06 -0.59 9.69 -39.61 -0.38 -0.98 16 8 C -0.14 -1.49 5.25 -104.60 -0.55 -2.04 16 9 C 0.19 2.48 5.79 -5.19 -0.03 2.45 16 10 N -0.75 -11.57 5.55 -66.41 -0.37 -11.94 16 11 C 0.69 14.59 8.57 -86.92 -0.74 13.84 16 12 O -0.60 -15.33 16.34 5.28 0.09 -15.24 16 13 N -0.73 -15.96 5.55 -66.42 -0.37 -16.33 16 14 C 0.27 7.26 5.43 -5.19 -0.03 7.23 16 15 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 19 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.06 -0.58 9.69 -39.61 -0.38 -0.97 16 24 C -0.21 -1.95 9.04 -39.43 -0.36 -2.31 16 25 H 0.10 0.41 7.90 -52.49 -0.41 -0.01 16 26 H 0.11 0.38 8.06 -52.49 -0.42 -0.04 16 27 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 28 H 0.07 0.41 7.38 -51.93 -0.38 0.03 16 29 H 0.07 0.42 7.67 -51.93 -0.40 0.02 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 32 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 33 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.39 5.03 8.48 -40.82 -0.35 4.68 16 35 H 0.39 7.24 8.33 -40.82 -0.34 6.90 16 36 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 40 H 0.13 0.91 6.30 -52.49 -0.33 0.57 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -33.88 350.65 -8.70 -42.58 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.55 Total: 6.59 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -3.30 Total: 1.88 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.00 Total: -53.92 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.11 Total: -18.46 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.88 -8.70 -42.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355637893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.903 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds