Wall clock time and date at job start Tue Mar 31 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50694 * 120.00521 * 2 1 4 4 O 1.42899 * 109.47517 * 134.99834 * 3 2 1 5 5 C 1.35893 * 117.00392 * 180.02562 * 4 3 2 6 6 C 1.38736 * 120.05957 * 180.02562 * 5 4 3 7 7 C 1.38138 * 119.94337 * 180.30421 * 6 5 4 8 8 C 1.38271 * 120.05803 * 359.41293 * 7 6 5 9 9 C 1.50698 * 119.94467 * 180.30180 * 8 7 6 10 10 N 1.46501 * 109.47469 * 270.30588 * 9 8 7 11 11 C 1.34773 * 120.00321 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99689 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00512 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00049 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46812 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00112 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00003 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99914 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00228 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46990 * 90.00191 * 19 17 15 21 21 H 1.48496 * 109.47147 * 210.00364 * 19 17 15 22 22 H 1.48498 * 109.47108 * 330.00267 * 19 17 15 23 23 C 1.38259 * 120.10889 * 0.60974 * 8 7 6 24 24 C 1.38146 * 120.05909 * 359.67363 * 23 8 7 25 25 H 1.07994 * 119.99354 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99999 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.99903 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46946 * 15.00182 * 3 2 1 29 29 H 1.09001 * 109.47141 * 254.99940 * 3 2 1 30 30 H 1.08002 * 120.02291 * 0.02562 * 6 5 4 31 31 H 1.08004 * 119.96766 * 179.69880 * 7 6 5 32 32 H 1.09000 * 109.47353 * 30.30435 * 9 8 7 33 33 H 1.09002 * 109.47057 * 150.30403 * 9 8 7 34 34 H 0.97002 * 120.00028 * 359.97438 * 10 9 8 35 35 H 0.96995 * 119.99458 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.47428 * 299.99296 * 14 13 11 37 37 H 1.08996 * 109.47404 * 60.00070 * 14 13 11 38 38 H 0.97002 * 119.99732 * 180.02562 * 18 17 15 39 39 H 1.08006 * 119.97147 * 179.69573 * 23 8 7 40 40 H 1.07993 * 120.03340 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9092 2.3451 1.0790 6 6 4.9600 2.3521 1.9848 7 6 5.7499 3.4778 2.1157 8 6 5.5016 4.5926 1.3363 9 6 6.3692 5.8168 1.4763 10 7 5.8050 6.7008 2.4993 11 6 6.4169 7.8643 2.7964 12 8 7.4374 8.1801 2.2157 13 7 5.8976 8.6779 3.7372 14 6 6.5630 9.9423 4.0604 15 6 5.7860 10.6584 5.1350 16 1 4.8863 10.2161 5.5366 17 6 6.2238 11.8782 5.6054 18 7 7.3192 12.4171 5.1160 19 14 5.2603 12.7662 6.9368 20 1 5.7624 12.3512 8.2714 21 1 5.4319 14.2326 6.7774 22 1 3.8208 12.4208 6.8201 23 6 4.4548 4.5882 0.4332 24 6 3.6582 3.4672 0.3026 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3857 2.1160 0.2660 29 1 2.4756 1.4866 -0.9926 30 1 5.1574 1.4798 2.5902 31 1 6.5651 3.4854 2.8242 32 1 7.3754 5.5174 1.7697 33 1 6.4104 6.3439 0.5232 34 1 4.9907 6.4491 2.9623 35 1 5.0833 8.4261 4.2001 36 1 7.5736 9.7406 4.4156 37 1 6.6092 10.5670 3.1685 38 1 7.6273 13.2752 5.4472 39 1 4.2598 5.4620 -0.1710 40 1 2.8409 3.4641 -0.4033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355637893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:29 Heat of formation + Delta-G solvation = -50.999440 kcal Electronic energy + Delta-G solvation = -21186.212312 eV Core-core repulsion = 17772.730418 eV Total energy + Delta-G solvation = -3413.481895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30376 -40.74832 -38.88531 -36.27358 -35.66829 -34.88473 -34.29329 -32.05074 -31.59589 -29.21534 -27.79261 -26.31133 -24.45711 -23.74547 -22.21699 -21.85015 -20.86067 -19.84136 -19.20331 -18.12010 -17.50371 -17.34467 -16.91862 -16.48763 -16.43920 -16.18295 -15.54866 -15.42518 -14.97008 -14.80586 -14.61192 -14.38056 -14.13801 -14.00947 -13.66498 -13.50624 -13.29190 -12.88798 -12.69471 -12.46099 -12.21061 -12.16539 -12.12727 -11.72171 -11.45734 -11.26232 -10.78807 -10.44621 -10.26175 -9.98965 -9.56042 -9.18944 -8.26677 -6.42986 0.26794 0.36621 1.12840 1.44505 1.47344 1.58317 1.97312 2.27045 2.37333 2.40973 2.79663 3.08086 3.64354 3.71590 3.76504 3.90015 3.95764 4.08245 4.22941 4.32813 4.38941 4.51013 4.61926 4.72212 4.76847 4.96423 5.07008 5.10832 5.22987 5.29669 5.32787 5.50294 5.52867 5.61073 5.63239 5.64310 5.70103 5.78043 5.87231 6.28695 6.40728 6.68815 7.26175 7.33339 7.74595 8.85583 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.002278 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.252292 B =12287.366881 C =12982.663459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.177 4.177 3 C 0.080 3.920 4 O -0.326 6.326 5 C 0.127 3.873 6 C -0.162 4.162 7 C -0.059 4.059 8 C -0.145 4.145 9 C 0.187 3.813 10 N -0.728 5.728 11 C 0.691 3.309 12 O -0.649 6.649 13 N -0.724 5.724 14 C 0.285 3.715 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.987 3.013 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.256 1.256 23 C -0.060 4.060 24 C -0.211 4.211 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.408 0.592 35 H 0.404 0.596 36 H -0.014 1.014 37 H -0.014 1.014 38 H 0.269 0.731 39 H 0.137 0.863 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.763 -25.793 -9.611 31.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C 0.006 3.994 4 O -0.240 6.240 5 C 0.081 3.919 6 C -0.180 4.180 7 C -0.078 4.078 8 C -0.146 4.146 9 C 0.064 3.936 10 N -0.386 5.386 11 C 0.391 3.609 12 O -0.532 6.532 13 N -0.377 5.377 14 C 0.161 3.839 15 C -0.593 4.593 16 H 0.101 0.899 17 C -0.197 4.197 18 N -0.569 5.569 19 Si 0.810 3.190 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.180 1.180 23 C -0.079 4.079 24 C -0.229 4.229 25 H 0.126 0.874 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.244 0.756 35 H 0.239 0.761 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.077 0.923 39 H 0.155 0.845 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.715 -25.530 -10.039 30.671 hybrid contribution -0.581 0.636 0.663 1.087 sum -14.296 -24.895 -9.376 30.200 Atomic orbital electron populations 1.24123 0.95092 1.03712 0.96795 1.22698 0.96148 0.97457 1.03190 1.22049 0.87478 0.97734 0.92137 1.86071 1.42729 1.35791 1.59425 1.19224 0.91275 0.86254 0.95119 1.20597 0.96006 1.00320 1.01088 1.21056 0.98358 0.91271 0.97105 1.19661 0.99082 0.95297 1.00555 1.19899 0.95589 0.87147 0.90969 1.45034 1.30503 1.19266 1.43761 1.16318 0.83044 0.81008 0.80531 1.90840 1.28001 1.76813 1.57567 1.45306 1.30156 1.21792 1.40484 1.18416 0.91832 0.79503 0.94125 1.21605 1.11254 1.05124 1.21268 0.89875 1.26075 0.96093 0.97977 0.99542 1.70150 1.24050 1.18719 1.43958 0.85132 0.79020 0.76935 0.77950 1.19620 1.20943 1.17981 1.21065 0.92605 0.97933 0.96279 1.21421 1.04018 0.93620 1.03854 0.87376 0.86127 0.86349 0.90484 0.90034 0.84076 0.84138 0.91771 0.91785 0.75583 0.76065 0.99611 0.99587 0.92261 0.84491 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 14.31 67.78 0.97 -0.22 16 2 C -0.18 -1.83 9.89 25.64 0.25 -1.58 16 3 C 0.08 0.95 5.15 71.23 0.37 1.31 16 4 O -0.33 -5.78 10.12 -92.34 -0.93 -6.71 16 5 C 0.13 2.32 6.69 22.51 0.15 2.47 16 6 C -0.16 -2.94 9.99 22.37 0.22 -2.71 16 7 C -0.06 -1.11 9.69 22.25 0.22 -0.90 16 8 C -0.15 -2.96 5.25 -19.85 -0.10 -3.06 16 9 C 0.19 4.91 5.79 85.63 0.50 5.40 16 10 N -0.73 -21.79 5.55 -482.29 -2.68 -24.47 16 11 C 0.69 29.46 8.57 179.06 1.53 30.99 16 12 O -0.65 -34.18 16.34 -4.01 -0.07 -34.25 16 13 N -0.72 -31.91 5.55 -482.30 -2.68 -34.58 16 14 C 0.28 16.05 5.43 85.64 0.46 16.51 16 15 C -0.55 -30.61 9.28 25.60 0.24 -30.37 16 16 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 17 C 0.00 0.15 5.46 84.65 0.46 0.61 16 18 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 19 Si 0.99 42.64 29.54 68.60 2.03 44.67 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 C -0.06 -1.09 9.69 22.25 0.22 -0.87 16 24 C -0.21 -3.43 9.04 22.37 0.20 -3.22 16 25 H 0.11 0.62 7.90 -2.91 -0.02 0.60 16 26 H 0.12 0.57 8.06 -2.91 -0.02 0.55 16 27 H 0.12 1.20 8.06 -2.91 -0.02 1.18 16 28 H 0.08 0.75 7.38 -2.39 -0.02 0.74 16 29 H 0.08 0.78 7.67 -2.39 -0.02 0.76 16 30 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.06 1.78 8.09 -2.39 -0.02 1.76 16 33 H 0.06 1.77 8.08 -2.39 -0.02 1.75 16 34 H 0.41 9.76 8.48 -92.71 -0.79 8.97 16 35 H 0.40 14.72 8.33 -92.71 -0.77 13.95 16 36 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 37 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.15 1.71 6.30 -2.91 -0.02 1.69 16 Total: -1.00 -74.69 350.65 1.14 -73.55 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.50 Total: 23.78 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 5.69 Total: 14.37 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -5.07 Total: -115.41 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.00 Total: -40.96 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -74.69 1.14 -73.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355637893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.552 kcal (2) G-P(sol) polarization free energy of solvation -74.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds