Wall clock time and date at job start Tue Mar 31 2020 06:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.47098 * 2 1 4 4 C 1.52999 * 109.47027 * 240.00132 * 2 1 3 5 5 C 1.50696 * 109.47046 * 175.00021 * 4 2 1 6 6 O 1.21288 * 120.00353 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99670 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00425 * 359.97438 * 7 5 4 9 9 C 1.37107 * 119.99660 * 180.02562 * 7 5 4 10 10 H 1.07999 * 119.99928 * 322.81523 * 9 7 5 11 11 C 1.38942 * 120.00126 * 142.82410 * 9 7 5 12 12 N 1.31414 * 120.00074 * 158.40156 * 11 9 7 13 13 Si 1.86799 * 120.00009 * 338.40312 * 11 9 7 14 14 H 1.48501 * 109.47160 * 95.72370 * 13 11 9 15 15 H 1.48507 * 109.47212 * 215.71882 * 13 11 9 16 16 H 1.48495 * 109.47217 * 335.72266 * 13 11 9 17 17 N 1.46499 * 109.47426 * 119.99851 * 2 1 3 18 18 C 1.34771 * 120.00002 * 275.28086 * 17 2 1 19 19 O 1.21550 * 120.00465 * 359.71826 * 18 17 2 20 20 C 1.47854 * 119.99909 * 179.72563 * 18 17 2 21 21 C 1.39573 * 120.14341 * 359.71589 * 20 18 17 22 22 C 1.37951 * 119.85136 * 179.79285 * 21 20 18 23 23 C 1.38366 * 120.14713 * 0.48801 * 22 21 20 24 24 C 1.38355 * 120.28683 * 359.74277 * 23 22 21 25 25 C 1.37960 * 120.14980 * 0.02562 * 24 23 22 26 26 H 1.08995 * 109.47016 * 59.99772 * 1 2 3 27 27 H 1.08997 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46874 * 300.00011 * 1 2 3 29 29 H 1.09004 * 109.47256 * 294.99793 * 4 2 1 30 30 H 1.09005 * 109.47295 * 54.99895 * 4 2 1 31 31 H 1.09002 * 109.46741 * 85.14052 * 8 7 5 32 32 H 1.08994 * 109.47350 * 205.13704 * 8 7 5 33 33 H 1.08994 * 109.47480 * 325.14194 * 8 7 5 34 34 H 0.97005 * 119.99773 * 179.97438 * 12 11 9 35 35 H 0.97000 * 119.99661 * 94.99479 * 17 2 1 36 36 H 1.08005 * 120.07305 * 0.02562 * 21 20 18 37 37 H 1.08001 * 119.93067 * 180.23065 * 22 21 20 38 38 H 1.08000 * 119.85306 * 179.71719 * 23 22 21 39 39 H 1.08005 * 119.92665 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.07153 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 8 4.1450 -0.0203 -0.4445 7 7 4.2148 -1.1796 -2.3349 8 6 3.4863 -1.8973 -3.3839 9 6 5.5812 -1.0833 -2.3924 10 1 6.0723 -0.1750 -2.0760 11 6 6.3342 -2.1543 -2.8578 12 7 7.5500 -1.9535 -3.3145 13 14 5.6184 -3.8795 -2.8345 14 1 5.0337 -4.1909 -4.1636 15 1 6.6926 -4.8570 -2.5250 16 1 4.5597 -3.9621 -1.7964 17 7 2.0184 -0.6906 1.1962 18 6 2.1418 -0.0196 2.3584 19 8 1.8527 1.1598 2.4131 20 6 2.6290 -0.7181 3.5671 21 6 2.9563 -2.0736 3.5092 22 6 3.4143 -2.7183 4.6395 23 6 3.5399 -2.0265 5.8313 24 6 3.2126 -0.6839 5.8965 25 6 2.7579 -0.0261 4.7723 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1370 31 1 3.1459 -1.1891 -4.1394 32 1 4.1451 -2.6325 -3.8458 33 1 2.6258 -2.4041 -2.9471 34 1 8.0758 -2.7012 -3.6391 35 1 2.2491 -1.6317 1.1526 36 1 2.8548 -2.6157 2.5806 37 1 3.6715 -3.7663 4.5953 38 1 3.8947 -2.5371 6.7144 39 1 3.3125 -0.1497 6.8299 40 1 2.5023 1.0220 4.8248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357533000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:01 Heat of formation + Delta-G solvation = -32.945016 kcal Electronic energy + Delta-G solvation = -23080.686366 eV Core-core repulsion = 19667.987369 eV Total energy + Delta-G solvation = -3412.698996 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.12840 -38.92198 -38.02864 -35.62473 -34.58331 -32.29034 -31.96800 -30.97184 -30.23250 -28.04914 -26.41094 -24.68998 -23.94862 -22.59167 -21.28747 -20.18858 -18.98340 -17.84549 -17.07659 -16.40300 -16.09328 -15.85107 -15.56356 -15.04252 -14.62272 -14.61411 -14.21346 -13.85478 -13.65268 -13.39241 -12.90494 -12.79124 -12.67140 -12.58222 -12.30653 -12.16797 -11.92622 -11.70621 -11.51089 -11.41773 -11.15767 -10.85076 -10.71911 -10.37766 -9.96184 -9.66534 -9.09953 -9.06736 -9.02784 -8.76812 -8.46166 -7.75579 -6.41439 -3.98239 0.88301 1.31363 2.98505 3.05297 3.16660 3.19713 3.39163 3.72295 3.95296 4.10561 4.36189 4.75117 4.76476 4.86776 4.94135 5.02963 5.11194 5.28414 5.31413 5.40909 5.45280 5.61867 5.68098 5.74237 5.78012 5.81322 5.90649 5.91662 6.07235 6.20052 6.24612 6.27947 6.33886 6.36100 6.41389 6.75314 6.84042 7.52118 7.76896 8.27444 8.49207 8.49259 8.95803 9.30158 9.75982 10.70993 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.004855 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.108676 B = 5765.325196 C = 6766.122757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.160 3.840 3 H 0.096 0.904 4 C -0.149 4.149 5 C 0.458 3.542 6 O -0.553 6.553 7 N -0.473 5.473 8 C 0.064 3.936 9 C -0.315 4.315 10 H 0.104 0.896 11 C 0.057 3.943 12 N -0.865 5.865 13 Si 0.882 3.118 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.267 1.267 17 N -0.702 5.702 18 C 0.565 3.435 19 O -0.543 6.543 20 C -0.125 4.125 21 C -0.084 4.084 22 C -0.128 4.128 23 C -0.100 4.100 24 C -0.131 4.131 25 C -0.063 4.063 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.273 0.727 35 H 0.396 0.604 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 -4.434 10.632 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.114 0.886 4 C -0.190 4.190 5 C 0.246 3.754 6 O -0.434 6.434 7 N -0.196 5.196 8 C -0.080 4.080 9 C -0.443 4.443 10 H 0.122 0.878 11 C -0.148 4.148 12 N -0.501 5.501 13 Si 0.710 3.290 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.191 1.191 17 N -0.352 5.352 18 C 0.352 3.648 19 O -0.422 6.422 20 C -0.128 4.128 21 C -0.102 4.102 22 C -0.146 4.146 23 C -0.119 4.119 24 C -0.149 4.149 25 C -0.082 4.082 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.442 -3.351 10.977 17.675 hybrid contribution 0.034 -1.667 -0.371 1.708 sum -13.408 -5.018 10.606 17.817 Atomic orbital electron populations 1.22195 0.95342 1.01870 1.02551 1.20666 0.92597 0.98400 0.82791 0.88557 1.22043 0.96139 1.01907 0.98913 1.20211 0.88381 0.84501 0.82329 1.90614 1.69801 1.44444 1.38518 1.43708 1.06926 1.49962 1.18983 1.21991 0.96475 0.97233 0.92308 1.19054 0.78897 1.01958 1.44343 0.87808 1.25377 0.95316 0.98411 0.95702 1.69764 1.10834 1.32296 1.37238 0.86896 0.79068 0.84791 0.78229 1.20374 1.21540 1.19109 1.45709 1.66524 1.13722 1.09219 1.18102 0.77271 0.86346 0.83081 1.90722 1.50796 1.15356 1.85333 1.20056 1.03873 0.94352 0.94556 1.21357 0.96620 0.93578 0.98691 1.21105 1.00369 1.00354 0.92786 1.21332 0.98075 0.94582 0.97885 1.21135 1.00387 0.94853 0.98511 1.21288 0.95357 1.00396 0.91124 0.91524 0.92639 0.92015 0.89775 0.88545 0.93024 0.91708 0.92821 0.91628 0.76947 0.85680 0.85508 0.85785 0.85508 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.48 37.16 0.35 -1.58 16 2 C 0.16 2.50 2.13 -67.93 -0.14 2.36 16 3 H 0.10 1.82 7.39 -51.92 -0.38 1.44 16 4 C -0.15 -2.31 3.86 -27.89 -0.11 -2.42 16 5 C 0.46 10.14 7.49 -10.99 -0.08 10.06 16 6 O -0.55 -14.59 15.22 5.55 0.08 -14.51 16 7 N -0.47 -11.13 2.59 -122.20 -0.32 -11.44 16 8 C 0.06 1.19 8.78 59.84 0.53 1.72 16 9 C -0.32 -8.90 9.37 -14.93 -0.14 -9.04 16 10 H 0.10 3.34 7.90 -52.49 -0.41 2.93 16 11 C 0.06 1.57 5.29 -17.47 -0.09 1.48 16 12 N -0.86 -25.01 13.96 55.50 0.77 -24.24 16 13 Si 0.88 20.09 24.96 -169.99 -4.24 15.84 16 14 H -0.28 -5.85 6.69 56.52 0.38 -5.47 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 N -0.70 -11.21 4.17 -54.75 -0.23 -11.44 16 18 C 0.56 9.88 7.74 -12.33 -0.10 9.78 16 19 O -0.54 -11.05 16.01 5.32 0.09 -10.96 16 20 C -0.13 -1.88 5.87 -104.97 -0.62 -2.50 16 21 C -0.08 -1.08 9.54 -39.19 -0.37 -1.45 16 22 C -0.13 -1.41 10.03 -39.64 -0.40 -1.80 16 23 C -0.10 -1.02 10.04 -39.49 -0.40 -1.42 16 24 C -0.13 -1.43 10.03 -39.64 -0.40 -1.83 16 25 C -0.06 -0.85 9.60 -39.19 -0.38 -1.23 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.08 1.10 7.41 -51.93 -0.38 0.72 16 30 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.30 3.42 -51.93 -0.18 1.13 16 33 H 0.05 0.80 6.64 -51.93 -0.34 0.46 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 35 H 0.40 5.63 6.64 -40.82 -0.27 5.36 16 36 H 0.13 1.45 6.41 -52.48 -0.34 1.11 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.13 1.82 7.65 -52.49 -0.40 1.42 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -34.99 333.69 -6.41 -41.40 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.25 Total: 8.18 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.34 Total: 2.13 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.23 Total: -47.12 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: 0.17 Total: -25.47 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.24 Total: 15.84 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.99 -6.41 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357533000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.458 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds