Wall clock time and date at job start Tue Mar 31 2020 06:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.47098 * 2 1 4 4 C 1.52999 * 109.47027 * 240.00132 * 2 1 3 5 5 C 1.50696 * 109.47046 * 175.00021 * 4 2 1 6 6 O 1.21288 * 120.00353 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99670 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00425 * 359.97438 * 7 5 4 9 9 C 1.37107 * 119.99660 * 180.02562 * 7 5 4 10 10 H 1.07999 * 119.99928 * 322.81523 * 9 7 5 11 11 C 1.38942 * 120.00126 * 142.82410 * 9 7 5 12 12 N 1.31414 * 120.00074 * 158.40156 * 11 9 7 13 13 Si 1.86799 * 120.00009 * 338.40312 * 11 9 7 14 14 H 1.48501 * 109.47160 * 95.72370 * 13 11 9 15 15 H 1.48507 * 109.47212 * 215.71882 * 13 11 9 16 16 H 1.48495 * 109.47217 * 335.72266 * 13 11 9 17 17 N 1.46499 * 109.47426 * 119.99851 * 2 1 3 18 18 C 1.34771 * 120.00002 * 275.28086 * 17 2 1 19 19 O 1.21550 * 120.00465 * 359.71826 * 18 17 2 20 20 C 1.47854 * 119.99909 * 179.72563 * 18 17 2 21 21 C 1.39573 * 120.14341 * 359.71589 * 20 18 17 22 22 C 1.37951 * 119.85136 * 179.79285 * 21 20 18 23 23 C 1.38366 * 120.14713 * 0.48801 * 22 21 20 24 24 C 1.38355 * 120.28683 * 359.74277 * 23 22 21 25 25 C 1.37960 * 120.14980 * 0.02562 * 24 23 22 26 26 H 1.08995 * 109.47016 * 59.99772 * 1 2 3 27 27 H 1.08997 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46874 * 300.00011 * 1 2 3 29 29 H 1.09004 * 109.47256 * 294.99793 * 4 2 1 30 30 H 1.09005 * 109.47295 * 54.99895 * 4 2 1 31 31 H 1.09002 * 109.46741 * 85.14052 * 8 7 5 32 32 H 1.08994 * 109.47350 * 205.13704 * 8 7 5 33 33 H 1.08994 * 109.47480 * 325.14194 * 8 7 5 34 34 H 0.97005 * 119.99773 * 179.97438 * 12 11 9 35 35 H 0.97000 * 119.99661 * 94.99479 * 17 2 1 36 36 H 1.08005 * 120.07305 * 0.02562 * 21 20 18 37 37 H 1.08001 * 119.93067 * 180.23065 * 22 21 20 38 38 H 1.08000 * 119.85306 * 179.71719 * 23 22 21 39 39 H 1.08005 * 119.92665 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.07153 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 8 4.1450 -0.0203 -0.4445 7 7 4.2148 -1.1796 -2.3349 8 6 3.4863 -1.8973 -3.3839 9 6 5.5812 -1.0833 -2.3924 10 1 6.0723 -0.1750 -2.0760 11 6 6.3342 -2.1543 -2.8578 12 7 7.5500 -1.9535 -3.3145 13 14 5.6184 -3.8795 -2.8345 14 1 5.0337 -4.1909 -4.1636 15 1 6.6926 -4.8570 -2.5250 16 1 4.5597 -3.9621 -1.7964 17 7 2.0184 -0.6906 1.1962 18 6 2.1418 -0.0196 2.3584 19 8 1.8527 1.1598 2.4131 20 6 2.6290 -0.7181 3.5671 21 6 2.9563 -2.0736 3.5092 22 6 3.4143 -2.7183 4.6395 23 6 3.5399 -2.0265 5.8313 24 6 3.2126 -0.6839 5.8965 25 6 2.7579 -0.0261 4.7723 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1370 31 1 3.1459 -1.1891 -4.1394 32 1 4.1451 -2.6325 -3.8458 33 1 2.6258 -2.4041 -2.9471 34 1 8.0758 -2.7012 -3.6391 35 1 2.2491 -1.6317 1.1526 36 1 2.8548 -2.6157 2.5806 37 1 3.6715 -3.7663 4.5953 38 1 3.8947 -2.5371 6.7144 39 1 3.3125 -0.1497 6.8299 40 1 2.5023 1.0220 4.8248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357533000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:00 Heat of formation + Delta-G solvation = -58.299877 kcal Electronic energy + Delta-G solvation = -23081.785835 eV Core-core repulsion = 19667.987369 eV Total energy + Delta-G solvation = -3413.798465 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37530 -40.46332 -39.20684 -37.11132 -36.32047 -34.15293 -33.30346 -31.89739 -31.32415 -29.41035 -27.99058 -26.41098 -25.12441 -23.52962 -22.49509 -21.43177 -20.63466 -19.06416 -18.95540 -17.84132 -17.61704 -17.24907 -16.90198 -16.22282 -16.01643 -15.78891 -15.54708 -15.40830 -14.71767 -14.62170 -14.37466 -14.32978 -14.13889 -13.85125 -13.67821 -13.42384 -13.18039 -12.91473 -12.80049 -12.59959 -12.56982 -12.27457 -12.05431 -11.88654 -11.77262 -11.04400 -10.98423 -10.37692 -10.15073 -9.96305 -9.83163 -9.66881 -8.50415 -6.13596 -0.11755 0.40245 1.21954 1.34200 1.47344 1.88583 2.00202 2.19524 2.23855 2.73555 2.92178 2.97507 3.66359 3.78876 3.88331 3.92878 4.01598 4.20514 4.23189 4.34865 4.46175 4.48556 4.53854 4.61815 4.67983 4.74190 4.83592 4.86490 4.87111 5.03661 5.09686 5.31898 5.35013 5.44337 5.48043 5.54459 5.55994 5.95065 6.04045 6.52143 6.59209 6.97311 7.22496 7.33143 7.92587 8.67658 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.004855 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.108676 B = 5765.325196 C = 6766.122757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 H 0.050 0.950 4 C -0.132 4.132 5 C 0.451 3.549 6 O -0.610 6.610 7 N -0.486 5.486 8 C 0.055 3.945 9 C -0.337 4.337 10 H 0.033 0.967 11 C 0.004 3.996 12 N -0.918 5.918 13 Si 0.963 3.037 14 H -0.240 1.240 15 H -0.295 1.295 16 H -0.247 1.247 17 N -0.698 5.698 18 C 0.554 3.446 19 O -0.588 6.588 20 C -0.157 4.157 21 C -0.093 4.093 22 C -0.129 4.129 23 C -0.092 4.092 24 C -0.129 4.129 25 C -0.084 4.084 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.279 0.721 35 H 0.405 0.595 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.474 -8.361 10.839 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.051 3.949 3 H 0.069 0.931 4 C -0.172 4.172 5 C 0.241 3.759 6 O -0.494 6.494 7 N -0.209 5.209 8 C -0.087 4.087 9 C -0.465 4.465 10 H 0.051 0.949 11 C -0.197 4.197 12 N -0.556 5.556 13 Si 0.785 3.215 14 H -0.165 1.165 15 H -0.222 1.222 16 H -0.171 1.171 17 N -0.347 5.347 18 C 0.343 3.657 19 O -0.471 6.471 20 C -0.160 4.160 21 C -0.112 4.112 22 C -0.147 4.147 23 C -0.109 4.109 24 C -0.147 4.147 25 C -0.103 4.103 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.241 0.759 36 H 0.152 0.848 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.172 0.828 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.214 -7.299 11.140 20.982 hybrid contribution 0.980 -0.327 -0.379 1.101 sum -15.233 -7.625 10.761 20.149 Atomic orbital electron populations 1.22083 0.91863 1.03785 1.02834 1.20728 0.95110 0.96103 0.82945 0.93149 1.22051 0.90236 1.04840 1.00050 1.21410 0.91239 0.82282 0.80958 1.90596 1.71823 1.46375 1.40632 1.43847 1.05332 1.50874 1.20854 1.22280 0.97161 0.97430 0.91793 1.18606 0.81899 1.00365 1.45597 0.94903 1.26303 0.95567 1.03424 0.94384 1.69906 1.13003 1.34106 1.38560 0.85642 0.78496 0.76906 0.80424 1.16528 1.22216 1.17073 1.45740 1.65955 1.14069 1.08971 1.18650 0.76701 0.86078 0.84289 1.90675 1.53007 1.17227 1.86165 1.20059 1.06281 0.95625 0.94003 1.21540 0.96848 0.92684 1.00098 1.21513 0.99174 1.01757 0.92246 1.21810 0.96126 0.94104 0.98909 1.21472 0.99142 0.95581 0.98481 1.21389 0.96702 1.00181 0.92039 0.89256 0.89763 0.93800 0.85472 0.85021 0.90832 0.92894 0.87689 0.91148 0.75903 0.84794 0.82594 0.82085 0.82763 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.48 71.98 0.68 -2.49 16 2 C 0.16 4.75 2.13 44.99 0.10 4.85 16 3 H 0.05 2.00 7.39 -2.38 -0.02 1.99 16 4 C -0.13 -3.65 3.86 29.85 0.12 -3.54 16 5 C 0.45 19.86 7.49 87.66 0.66 20.52 16 6 O -0.61 -33.90 15.22 -3.05 -0.05 -33.94 16 7 N -0.49 -22.56 2.59 -658.92 -1.70 -24.26 16 8 C 0.06 1.83 8.78 127.77 1.12 2.96 16 9 C -0.34 -19.84 9.37 84.04 0.79 -19.05 16 10 H 0.03 2.33 7.90 -2.91 -0.02 2.31 16 11 C 0.00 0.25 5.29 84.92 0.45 0.70 16 12 N -0.92 -55.13 13.96 21.66 0.30 -54.82 16 13 Si 0.96 40.22 24.96 68.60 1.71 41.93 16 14 H -0.24 -8.66 6.69 99.48 0.67 -8.00 16 15 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 16 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 17 N -0.70 -22.33 4.17 -445.40 -1.86 -24.19 16 18 C 0.55 20.42 7.74 86.79 0.67 21.10 16 19 O -0.59 -25.85 16.01 -3.87 -0.06 -25.91 16 20 C -0.16 -4.86 5.87 -20.09 -0.12 -4.98 16 21 C -0.09 -2.31 9.54 22.52 0.21 -2.10 16 22 C -0.13 -2.49 10.03 22.23 0.22 -2.26 16 23 C -0.09 -1.58 10.04 22.33 0.22 -1.35 16 24 C -0.13 -2.62 10.03 22.23 0.22 -2.40 16 25 C -0.08 -2.36 9.60 22.53 0.22 -2.15 16 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.11 8.14 -2.38 -0.02 1.10 16 29 H 0.13 2.52 7.41 -2.38 -0.02 2.51 16 30 H 0.13 2.82 8.11 -2.38 -0.02 2.80 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 1.90 3.42 -2.39 -0.01 1.89 16 33 H 0.10 2.41 6.64 -2.39 -0.02 2.39 16 34 H 0.28 15.29 8.31 -92.70 -0.77 14.52 16 35 H 0.40 11.07 6.64 -92.71 -0.62 10.45 16 36 H 0.13 2.93 6.41 -2.91 -0.02 2.91 16 37 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 40 H 0.12 3.58 7.65 -2.91 -0.02 3.56 16 Total: -1.00 -87.20 333.69 4.31 -82.89 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.40 Total: 28.52 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.56 Total: 9.79 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -3.26 Total: -103.28 kcal Atomic # 8 Polarization: -59.75 SS G_CDS: -0.11 Total: -59.85 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.71 Total: 41.93 kcal Total: -87.20 4.31 -82.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357533000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.586 kcal (2) G-P(sol) polarization free energy of solvation -87.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds