Wall clock time and date at job start Tue Mar 31 2020 06:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47472 * 2 1 4 4 C 1.53000 * 109.46933 * 119.99986 * 2 1 3 5 5 C 1.50705 * 109.46984 * 184.99845 * 4 2 1 6 6 O 1.21287 * 120.00137 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99764 * 180.02562 * 5 4 2 8 8 C 1.46504 * 120.00224 * 359.97438 * 7 5 4 9 9 C 1.37099 * 119.99648 * 180.02562 * 7 5 4 10 10 H 1.07997 * 120.00292 * 24.38615 * 9 7 5 11 11 C 1.38957 * 119.99742 * 204.39342 * 9 7 5 12 12 N 1.31407 * 119.99761 * 12.65181 * 11 9 7 13 13 Si 1.86796 * 120.00088 * 192.65078 * 11 9 7 14 14 H 1.48506 * 109.46949 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46957 * 120.00043 * 13 11 9 16 16 H 1.48499 * 109.47234 * 240.00130 * 13 11 9 17 17 N 1.46499 * 109.47279 * 239.99637 * 2 1 3 18 18 C 1.34781 * 120.00067 * 84.99963 * 17 2 1 19 19 O 1.21559 * 119.99738 * 0.02562 * 18 17 2 20 20 C 1.47847 * 119.99998 * 180.02562 * 18 17 2 21 21 C 1.39576 * 120.14515 * 359.72041 * 20 18 17 22 22 C 1.37956 * 119.85160 * 179.78996 * 21 20 18 23 23 C 1.38357 * 120.14295 * 0.49123 * 22 21 20 24 24 C 1.38358 * 120.29328 * 359.74181 * 23 22 21 25 25 C 1.37952 * 120.14673 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.46879 * 59.99927 * 1 2 3 27 27 H 1.09005 * 109.46703 * 300.00429 * 1 2 3 28 28 H 1.09000 * 109.47276 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47253 * 304.99270 * 4 2 1 30 30 H 1.08998 * 109.47335 * 64.99942 * 4 2 1 31 31 H 1.08992 * 109.46542 * 85.86547 * 8 7 5 32 32 H 1.09000 * 109.47128 * 205.86321 * 8 7 5 33 33 H 1.08993 * 109.46741 * 325.86740 * 8 7 5 34 34 H 0.97003 * 120.00009 * 180.02562 * 12 11 9 35 35 H 0.96998 * 120.00190 * 265.00701 * 17 2 1 36 36 H 1.08000 * 120.07400 * 0.02562 * 21 20 18 37 37 H 1.08000 * 119.92785 * 180.23198 * 22 21 20 38 38 H 1.08007 * 119.85290 * 179.71657 * 23 22 21 39 39 H 1.08007 * 119.92482 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.07425 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3127 6 8 4.1450 -0.0204 0.4445 7 7 4.2149 -1.1806 2.3343 8 6 3.4863 -1.8983 3.3834 9 6 5.5812 -1.0834 2.3923 10 1 6.0864 -0.2701 1.8927 11 6 6.3160 -2.0315 3.0938 12 7 5.7431 -3.1464 3.4884 13 14 8.1179 -1.7212 3.4759 14 1 8.5202 -0.4013 2.9269 15 1 8.3201 -1.7273 4.9471 16 1 8.9458 -2.7880 2.8581 17 7 2.0183 -0.6907 -1.1961 18 6 2.1471 -0.0184 -2.3572 19 8 1.8584 1.1612 -2.4117 20 6 2.6394 -0.7156 -3.5644 21 6 2.9773 -2.0685 -3.5037 22 6 3.4319 -2.7141 -4.6350 23 6 3.5629 -2.0209 -5.8252 24 6 3.2343 -0.6786 -5.8909 25 6 2.7739 -0.0222 -4.7682 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.3255 -2.9305 3.0727 32 1 4.0677 -1.8826 4.3052 33 1 2.5239 -1.4156 3.5525 34 1 6.2559 -3.8081 3.9785 35 1 2.2489 -1.6318 -1.1525 36 1 2.8794 -2.6096 -2.5742 37 1 3.6901 -3.7618 -4.5903 38 1 3.9236 -2.5299 -6.7069 39 1 3.3392 -0.1432 -6.8230 40 1 2.5182 1.0258 -4.8208 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357533004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:03 Heat of formation + Delta-G solvation = -41.644710 kcal Electronic energy + Delta-G solvation = -22962.332749 eV Core-core repulsion = 19549.256506 eV Total energy + Delta-G solvation = -3413.076243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04584 -38.72995 -37.90986 -35.50750 -34.42672 -32.15999 -31.59150 -30.92785 -30.12254 -27.85305 -26.10225 -24.39301 -23.87440 -22.54710 -21.26348 -20.10260 -19.00149 -17.76442 -16.86259 -16.31240 -15.97613 -15.78718 -14.98824 -14.78283 -14.54216 -14.44550 -14.05478 -13.98802 -13.59748 -13.31741 -13.10151 -12.70528 -12.26789 -12.14257 -11.96272 -11.72042 -11.65873 -11.42360 -11.22839 -11.18729 -11.10803 -10.91789 -10.59374 -10.32363 -10.24968 -9.59155 -9.03168 -9.01673 -8.97887 -8.66682 -8.33177 -7.65577 -6.33605 -3.89155 0.92957 1.35563 3.11040 3.14120 3.24715 3.32026 3.48283 3.90897 4.00654 4.12886 4.74017 4.80852 4.84450 4.91393 5.10160 5.12888 5.22912 5.36074 5.45940 5.48639 5.57012 5.78378 5.80678 5.86663 5.95108 5.96874 6.00917 6.26606 6.32770 6.34871 6.40056 6.42031 6.51727 6.80867 6.83905 6.90712 7.16217 7.56183 7.85885 8.14867 8.48858 8.57053 9.19627 9.42681 9.99484 10.71507 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.004460 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.747844 B = 6276.416242 C = 7374.795941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.161 3.839 3 H 0.094 0.906 4 C -0.142 4.142 5 C 0.443 3.557 6 O -0.578 6.578 7 N -0.450 5.450 8 C 0.112 3.888 9 C -0.303 4.303 10 H 0.097 0.903 11 C 0.030 3.970 12 N -0.884 5.884 13 Si 0.923 3.077 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.282 1.282 17 N -0.699 5.699 18 C 0.564 3.436 19 O -0.546 6.546 20 C -0.125 4.125 21 C -0.083 4.083 22 C -0.128 4.128 23 C -0.101 4.101 24 C -0.132 4.132 25 C -0.064 4.064 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.266 0.734 35 H 0.396 0.604 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.196 -1.778 -10.191 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.056 3.944 3 H 0.112 0.888 4 C -0.183 4.183 5 C 0.231 3.769 6 O -0.462 6.462 7 N -0.169 5.169 8 C -0.032 4.032 9 C -0.432 4.432 10 H 0.114 0.886 11 C -0.173 4.173 12 N -0.524 5.524 13 Si 0.750 3.250 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.208 1.208 17 N -0.348 5.348 18 C 0.351 3.649 19 O -0.425 6.425 20 C -0.128 4.128 21 C -0.101 4.101 22 C -0.146 4.146 23 C -0.120 4.120 24 C -0.150 4.150 25 C -0.082 4.082 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.231 0.769 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.037 -0.812 -10.482 13.863 hybrid contribution 1.098 -0.735 0.550 1.432 sum -7.938 -1.547 -9.932 12.808 Atomic orbital electron populations 1.22195 0.95515 1.01860 1.02390 1.20658 0.92423 0.98315 0.82966 0.88779 1.21941 0.96303 1.01789 0.98285 1.20042 0.88432 0.85440 0.83023 1.90570 1.69843 1.46472 1.39273 1.43600 1.06570 1.47505 1.19230 1.21460 0.93166 0.95508 0.93053 1.19675 0.80876 1.09996 1.32604 0.88551 1.25317 1.00061 0.94196 0.97686 1.69992 1.37243 1.06798 1.38338 0.85907 0.82370 0.78710 0.78005 1.19259 1.20685 1.20782 1.45702 1.66211 1.13688 1.09230 1.18103 0.77345 0.86336 0.83108 1.90716 1.51073 1.15396 1.85309 1.20073 1.03702 0.94409 0.94595 1.21379 0.96443 0.93594 0.98718 1.21108 1.00423 1.00332 0.92763 1.21325 0.98165 0.94572 0.97900 1.21125 1.00489 0.94877 0.98486 1.21282 0.95432 1.00357 0.91178 0.92143 0.91613 0.92614 0.88973 0.89942 0.93140 0.90805 0.95651 0.92393 0.76889 0.85560 0.85493 0.85830 0.85568 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.48 37.16 0.35 -1.74 16 2 C 0.16 2.68 2.14 -67.93 -0.15 2.53 16 3 H 0.09 1.87 7.39 -51.93 -0.38 1.49 16 4 C -0.14 -2.41 3.85 -27.88 -0.11 -2.52 16 5 C 0.44 10.34 7.49 -10.98 -0.08 10.26 16 6 O -0.58 -15.64 15.07 5.55 0.08 -15.56 16 7 N -0.45 -11.21 3.01 -122.19 -0.37 -11.58 16 8 C 0.11 2.40 8.44 59.85 0.51 2.91 16 9 C -0.30 -8.40 9.24 -14.93 -0.14 -8.54 16 10 H 0.10 2.84 7.45 -52.49 -0.39 2.45 16 11 C 0.03 0.79 5.04 -17.47 -0.09 0.70 16 12 N -0.88 -23.24 10.84 55.50 0.60 -22.64 16 13 Si 0.92 20.77 29.57 -169.99 -5.03 15.75 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 N -0.70 -11.72 4.17 -54.75 -0.23 -11.95 16 18 C 0.56 10.21 7.74 -12.33 -0.10 10.11 16 19 O -0.55 -11.41 16.01 5.31 0.09 -11.33 16 20 C -0.12 -1.93 5.87 -104.97 -0.62 -2.55 16 21 C -0.08 -1.10 9.54 -39.19 -0.37 -1.48 16 22 C -0.13 -1.45 10.03 -39.64 -0.40 -1.85 16 23 C -0.10 -1.06 10.04 -39.49 -0.40 -1.45 16 24 C -0.13 -1.47 10.03 -39.64 -0.40 -1.87 16 25 C -0.06 -0.89 9.60 -39.19 -0.38 -1.26 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.37 7.41 -51.93 -0.38 0.99 16 30 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 31 H 0.05 1.10 7.83 -51.93 -0.41 0.69 16 32 H 0.07 1.70 6.80 -51.93 -0.35 1.35 16 33 H 0.02 0.44 6.61 -51.93 -0.34 0.10 16 34 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.40 6.02 6.64 -40.82 -0.27 5.75 16 36 H 0.13 1.55 6.41 -52.49 -0.34 1.21 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.13 1.86 7.65 -52.49 -0.40 1.45 16 LS Contribution 337.72 15.07 5.09 5.09 Total: -1.00 -33.45 337.72 -7.48 -40.94 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.36 Total: 8.03 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -2.36 Total: 3.26 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.01 Total: -46.18 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: 0.17 Total: -26.89 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.45 -7.48 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357533004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.707 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds