Wall clock time and date at job start Tue Mar 31 2020 06:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47472 * 2 1 4 4 C 1.53000 * 109.46933 * 119.99986 * 2 1 3 5 5 C 1.50705 * 109.46984 * 184.99845 * 4 2 1 6 6 O 1.21287 * 120.00137 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99764 * 180.02562 * 5 4 2 8 8 C 1.46504 * 120.00224 * 359.97438 * 7 5 4 9 9 C 1.37099 * 119.99648 * 180.02562 * 7 5 4 10 10 H 1.07997 * 120.00292 * 24.38615 * 9 7 5 11 11 C 1.38957 * 119.99742 * 204.39342 * 9 7 5 12 12 N 1.31407 * 119.99761 * 12.65181 * 11 9 7 13 13 Si 1.86796 * 120.00088 * 192.65078 * 11 9 7 14 14 H 1.48506 * 109.46949 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46957 * 120.00043 * 13 11 9 16 16 H 1.48499 * 109.47234 * 240.00130 * 13 11 9 17 17 N 1.46499 * 109.47279 * 239.99637 * 2 1 3 18 18 C 1.34781 * 120.00067 * 84.99963 * 17 2 1 19 19 O 1.21559 * 119.99738 * 0.02562 * 18 17 2 20 20 C 1.47847 * 119.99998 * 180.02562 * 18 17 2 21 21 C 1.39576 * 120.14515 * 359.72041 * 20 18 17 22 22 C 1.37956 * 119.85160 * 179.78996 * 21 20 18 23 23 C 1.38357 * 120.14295 * 0.49123 * 22 21 20 24 24 C 1.38358 * 120.29328 * 359.74181 * 23 22 21 25 25 C 1.37952 * 120.14673 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.46879 * 59.99927 * 1 2 3 27 27 H 1.09005 * 109.46703 * 300.00429 * 1 2 3 28 28 H 1.09000 * 109.47276 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47253 * 304.99270 * 4 2 1 30 30 H 1.08998 * 109.47335 * 64.99942 * 4 2 1 31 31 H 1.08992 * 109.46542 * 85.86547 * 8 7 5 32 32 H 1.09000 * 109.47128 * 205.86321 * 8 7 5 33 33 H 1.08993 * 109.46741 * 325.86740 * 8 7 5 34 34 H 0.97003 * 120.00009 * 180.02562 * 12 11 9 35 35 H 0.96998 * 120.00190 * 265.00701 * 17 2 1 36 36 H 1.08000 * 120.07400 * 0.02562 * 21 20 18 37 37 H 1.08000 * 119.92785 * 180.23198 * 22 21 20 38 38 H 1.08007 * 119.85290 * 179.71657 * 23 22 21 39 39 H 1.08007 * 119.92482 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.07425 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3127 6 8 4.1450 -0.0204 0.4445 7 7 4.2149 -1.1806 2.3343 8 6 3.4863 -1.8983 3.3834 9 6 5.5812 -1.0834 2.3923 10 1 6.0864 -0.2701 1.8927 11 6 6.3160 -2.0315 3.0938 12 7 5.7431 -3.1464 3.4884 13 14 8.1179 -1.7212 3.4759 14 1 8.5202 -0.4013 2.9269 15 1 8.3201 -1.7273 4.9471 16 1 8.9458 -2.7880 2.8581 17 7 2.0183 -0.6907 -1.1961 18 6 2.1471 -0.0184 -2.3572 19 8 1.8584 1.1612 -2.4117 20 6 2.6394 -0.7156 -3.5644 21 6 2.9773 -2.0685 -3.5037 22 6 3.4319 -2.7141 -4.6350 23 6 3.5629 -2.0209 -5.8252 24 6 3.2343 -0.6786 -5.8909 25 6 2.7739 -0.0222 -4.7682 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.3255 -2.9305 3.0727 32 1 4.0677 -1.8826 4.3052 33 1 2.5239 -1.4156 3.5525 34 1 6.2559 -3.8081 3.9785 35 1 2.2489 -1.6318 -1.1525 36 1 2.8794 -2.6096 -2.5742 37 1 3.6901 -3.7618 -4.5903 38 1 3.9236 -2.5299 -6.7069 39 1 3.3392 -0.1432 -6.8230 40 1 2.5182 1.0258 -4.8208 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357533004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:02 Heat of formation + Delta-G solvation = -63.396184 kcal Electronic energy + Delta-G solvation = -22963.275964 eV Core-core repulsion = 19549.256506 eV Total energy + Delta-G solvation = -3414.019458 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33650 -40.32896 -39.18332 -37.07265 -36.25084 -33.73713 -33.21095 -31.89128 -31.28186 -29.31509 -27.86136 -26.12943 -25.12441 -23.52724 -22.54032 -21.40704 -20.68032 -18.97709 -18.82934 -17.79884 -17.57099 -16.88306 -16.59201 -16.14940 -15.98609 -15.91318 -15.59525 -15.44679 -14.70329 -14.63666 -14.33979 -13.85881 -13.81799 -13.58699 -13.40761 -13.15695 -13.11573 -12.87793 -12.76208 -12.66063 -12.59082 -12.28094 -12.13690 -12.05161 -11.87051 -10.99592 -10.96862 -10.33267 -10.13209 -9.95785 -9.81881 -9.61973 -8.33681 -5.97247 -0.11091 0.40795 1.34143 1.39595 1.52469 1.89618 2.07902 2.25545 2.27682 2.92789 3.07895 3.10115 3.68463 3.82393 3.92762 3.99188 4.02398 4.23195 4.27541 4.46768 4.48092 4.52439 4.58514 4.70695 4.78744 4.84178 4.88098 5.04151 5.06537 5.10674 5.31361 5.36035 5.41200 5.44871 5.45515 5.48480 5.57209 5.95724 6.12597 6.51080 6.55313 7.20721 7.23069 7.51746 8.09346 8.69223 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.004460 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.747844 B = 6276.416242 C = 7374.795941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 H 0.052 0.948 4 C -0.126 4.126 5 C 0.434 3.566 6 O -0.625 6.625 7 N -0.466 5.466 8 C 0.120 3.880 9 C -0.341 4.341 10 H 0.062 0.938 11 C 0.002 3.998 12 N -0.894 5.894 13 Si 0.982 3.018 14 H -0.279 1.279 15 H -0.265 1.265 16 H -0.275 1.275 17 N -0.696 5.696 18 C 0.554 3.446 19 O -0.589 6.589 20 C -0.156 4.156 21 C -0.093 4.093 22 C -0.129 4.129 23 C -0.091 4.091 24 C -0.128 4.128 25 C -0.083 4.083 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.272 0.728 35 H 0.403 0.597 36 H 0.130 0.870 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 -3.884 -10.532 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.054 3.946 3 H 0.071 0.929 4 C -0.166 4.166 5 C 0.224 3.776 6 O -0.512 6.512 7 N -0.186 5.186 8 C -0.023 4.023 9 C -0.469 4.469 10 H 0.080 0.920 11 C -0.200 4.200 12 N -0.533 5.533 13 Si 0.806 3.194 14 H -0.204 1.204 15 H -0.190 1.190 16 H -0.201 1.201 17 N -0.345 5.345 18 C 0.343 3.657 19 O -0.471 6.471 20 C -0.159 4.159 21 C -0.112 4.112 22 C -0.147 4.147 23 C -0.109 4.109 24 C -0.146 4.146 25 C -0.102 4.102 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.141 0.859 30 H 0.131 0.869 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.239 0.761 36 H 0.148 0.852 37 H 0.173 0.827 38 H 0.180 0.820 39 H 0.174 0.826 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.627 -2.965 -10.785 14.758 hybrid contribution 1.307 -0.107 0.594 1.440 sum -8.320 -3.072 -10.191 13.510 Atomic orbital electron populations 1.22085 0.92092 1.03592 1.02845 1.20687 0.94907 0.96056 0.82914 0.92944 1.21910 0.91127 1.03976 0.99614 1.21121 0.91070 0.83624 0.81764 1.90544 1.71656 1.48095 1.40935 1.43860 1.06051 1.48067 1.20578 1.21452 0.94391 0.95464 0.91019 1.19525 0.82823 1.10204 1.34359 0.91964 1.25948 1.03521 0.93720 0.96835 1.70040 1.38491 1.06859 1.37873 0.85055 0.77893 0.77973 0.78488 1.20437 1.18955 1.20065 1.45744 1.65764 1.13957 1.09063 1.18661 0.76750 0.86080 0.84230 1.90668 1.53189 1.17152 1.86106 1.20050 1.06180 0.95599 0.94063 1.21526 0.96888 0.92799 1.00007 1.21501 0.99263 1.01689 0.92244 1.21809 0.96123 0.94121 0.98826 1.21477 0.99080 0.95551 0.98482 1.21390 0.96667 1.00185 0.91977 0.93540 0.89348 0.90134 0.85893 0.86922 0.93578 0.92846 0.91068 0.91776 0.76072 0.85180 0.82709 0.81998 0.82611 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.48 71.98 0.68 -2.91 16 2 C 0.16 5.30 2.14 44.99 0.10 5.40 16 3 H 0.05 2.19 7.39 -2.39 -0.02 2.17 16 4 C -0.13 -4.06 3.85 29.85 0.11 -3.95 16 5 C 0.43 20.53 7.49 87.66 0.66 21.18 16 6 O -0.63 -35.44 15.07 -3.05 -0.05 -35.49 16 7 N -0.47 -23.42 3.01 -658.89 -1.98 -25.40 16 8 C 0.12 4.97 8.44 127.77 1.08 6.05 16 9 C -0.34 -19.41 9.24 84.04 0.78 -18.63 16 10 H 0.06 3.88 7.45 -2.91 -0.02 3.86 16 11 C 0.00 0.09 5.04 84.93 0.43 0.51 16 12 N -0.89 -46.45 10.84 21.66 0.23 -46.21 16 13 Si 0.98 42.73 29.57 68.60 2.03 44.75 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 15 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 16 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 17 N -0.70 -23.98 4.17 -445.40 -1.86 -25.83 16 18 C 0.55 21.22 7.74 86.79 0.67 21.89 16 19 O -0.59 -26.45 16.01 -3.90 -0.06 -26.51 16 20 C -0.16 -5.01 5.87 -20.09 -0.12 -5.13 16 21 C -0.09 -2.47 9.54 22.53 0.21 -2.26 16 22 C -0.13 -2.63 10.03 22.23 0.22 -2.40 16 23 C -0.09 -1.61 10.04 22.33 0.22 -1.39 16 24 C -0.13 -2.65 10.03 22.23 0.22 -2.42 16 25 C -0.08 -2.38 9.60 22.52 0.22 -2.16 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.12 3.24 7.41 -2.39 -0.02 3.23 16 30 H 0.11 3.01 8.11 -2.39 -0.02 2.99 16 31 H 0.05 1.93 7.83 -2.39 -0.02 1.91 16 32 H 0.05 2.41 6.80 -2.39 -0.02 2.40 16 33 H 0.07 2.25 6.61 -2.39 -0.02 2.24 16 34 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 35 H 0.40 12.37 6.64 -92.71 -0.62 11.75 16 36 H 0.13 3.18 6.41 -2.91 -0.02 3.16 16 37 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.12 3.65 7.65 -2.91 -0.02 3.63 16 Total: -1.00 -77.62 337.72 4.24 -73.38 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.44 Total: 27.54 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.49 Total: 13.78 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -3.61 Total: -97.45 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -0.11 Total: -62.00 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -77.62 4.24 -73.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357533004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.980 kcal (2) G-P(sol) polarization free energy of solvation -77.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds