Wall clock time and date at job start Tue Mar 31 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47012 * 2 1 4 4 O 1.42901 * 109.46881 * 120.00135 * 2 1 3 5 5 C 1.35919 * 117.00242 * 84.24434 * 4 2 1 6 6 C 1.38863 * 120.40288 * 179.63188 * 5 4 2 7 7 N 1.31892 * 121.01327 * 180.02562 * 6 5 4 8 8 C 1.31670 * 121.95224 * 359.97438 * 7 6 5 9 9 C 1.39604 * 120.67747 * 359.97438 * 8 7 6 10 10 C 1.47732 * 120.53914 * 180.02562 * 9 8 7 11 11 O 1.21585 * 120.00378 * 223.10385 * 10 9 8 12 12 N 1.34778 * 119.99576 * 43.10104 * 10 9 8 13 13 C 1.36876 * 119.99815 * 175.48720 * 12 10 9 14 14 H 1.08004 * 120.00270 * 326.56657 * 13 12 10 15 15 C 1.39047 * 119.99773 * 146.55792 * 13 12 10 16 16 N 1.31359 * 119.99983 * 357.90836 * 15 13 12 17 17 Si 1.86799 * 119.99939 * 177.90897 * 15 13 12 18 18 H 1.48503 * 109.46999 * 269.99839 * 17 15 13 19 19 H 1.48498 * 109.47421 * 29.99761 * 17 15 13 20 20 H 1.48501 * 109.47244 * 150.00272 * 17 15 13 21 21 C 1.46499 * 120.00218 * 355.49684 * 12 10 9 22 22 C 1.53001 * 117.50134 * 134.81536 * 21 12 10 23 23 C 1.53000 * 60.00105 * 252.50811 * 22 21 12 24 24 C 1.38824 * 120.39890 * 359.91109 * 5 4 2 25 25 H 1.09004 * 109.47181 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47126 * 299.99863 * 1 2 3 27 27 H 1.08995 * 109.47279 * 59.99955 * 1 2 3 28 28 H 1.08999 * 109.46770 * 239.99628 * 2 1 3 29 29 H 1.08998 * 109.46649 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47135 * 300.00133 * 3 2 1 31 31 H 1.09000 * 109.46757 * 60.00024 * 3 2 1 32 32 H 1.07999 * 119.49446 * 0.04105 * 6 5 4 33 33 H 1.07993 * 119.66049 * 179.97438 * 8 7 6 34 34 H 0.97006 * 119.99896 * 175.02249 * 16 15 13 35 35 H 1.09005 * 115.54694 * 280.52350 * 21 12 10 36 36 H 1.09003 * 117.49513 * 359.97438 * 22 21 12 37 37 H 1.08998 * 117.50068 * 145.01864 * 22 21 12 38 38 H 1.08997 * 117.49812 * 252.51532 * 23 22 21 39 39 H 1.08994 * 117.51780 * 107.47732 * 23 22 21 40 40 H 1.08003 * 120.88684 * 359.97172 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0975 -2.0283 1.1032 6 6 2.5589 -2.7535 2.1938 7 7 2.6527 -4.0682 2.1452 8 6 2.3164 -4.7515 1.0711 9 6 1.8421 -4.0993 -0.0685 10 6 1.4651 -4.8690 -1.2718 11 8 1.7956 -4.4753 -2.3736 12 7 0.7548 -6.0078 -1.1480 13 6 0.3262 -6.6718 -2.2656 14 1 0.0540 -6.1178 -3.1518 15 6 0.2415 -8.0597 -2.2599 16 7 0.6116 -8.7359 -1.1963 17 14 -0.3988 -8.9625 -3.7646 18 1 -1.8716 -9.1201 -3.6579 19 1 -0.0716 -8.1835 -4.9858 20 1 0.2376 -10.3017 -3.8464 21 6 0.4414 -6.5347 0.1825 22 6 -0.9900 -7.0132 0.4336 23 6 -0.4970 -5.7101 1.0659 24 6 1.7359 -2.7032 -0.0548 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 2.8451 -2.2331 3.0958 33 1 2.4085 -5.8275 1.0716 34 1 0.4854 -9.6972 -1.1645 35 1 1.2478 -7.0783 0.6748 36 1 -1.6986 -6.9355 -0.3910 37 1 -1.1256 -7.8719 1.0912 38 1 -0.3081 -5.7116 2.1394 39 1 -0.8808 -4.7754 0.6573 40 1 1.3773 -2.1660 -0.9205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360301244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:20 Heat of formation + Delta-G solvation = 1.035758 kcal Electronic energy + Delta-G solvation = -23637.572172 eV Core-core repulsion = 20226.346692 eV Total energy + Delta-G solvation = -3411.225479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57582 -39.02185 -37.82306 -36.17722 -33.37470 -33.13140 -31.83592 -31.19770 -29.82947 -27.43423 -25.67444 -23.78473 -23.55631 -21.71660 -21.46148 -20.85395 -19.70368 -17.83396 -17.08880 -16.59781 -16.34842 -15.79852 -15.48349 -15.20703 -14.45646 -14.25172 -14.10499 -13.85897 -13.45341 -13.19791 -12.89020 -12.79335 -12.53541 -12.40819 -12.25424 -11.95400 -11.79818 -11.25694 -11.16651 -11.06456 -10.79210 -10.75728 -10.63259 -10.38645 -9.92935 -9.60302 -9.39918 -9.27242 -8.90054 -8.48079 -8.08758 -7.74997 -6.37740 -4.05582 1.24954 1.56245 3.11020 3.14466 3.21524 3.26512 3.69174 4.00963 4.24985 4.54329 4.64809 4.66273 4.78166 4.87803 4.90409 5.01413 5.07524 5.25742 5.35440 5.37707 5.42427 5.56756 5.61777 5.69193 5.76894 5.84207 5.91104 6.00281 6.04177 6.10940 6.27616 6.30300 6.46964 6.68821 6.72837 6.90532 7.08841 7.39430 7.45782 8.05580 8.24106 8.37411 9.05413 9.24933 9.83091 10.65160 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.004761 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.330910 B = 5879.888151 C = 6417.341324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 C -0.145 4.145 4 O -0.307 6.307 5 C 0.072 3.928 6 C 0.068 3.932 7 N -0.450 5.450 8 C 0.089 3.911 9 C -0.096 4.096 10 C 0.490 3.510 11 O -0.577 6.577 12 N -0.403 5.403 13 C -0.311 4.311 14 H 0.094 0.906 15 C 0.045 3.955 16 N -0.863 5.863 17 Si 0.923 3.077 18 H -0.277 1.277 19 H -0.268 1.268 20 H -0.282 1.282 21 C 0.120 3.880 22 C -0.136 4.136 23 C -0.218 4.218 24 C -0.133 4.133 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.270 0.730 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.016 11.752 6.205 13.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.015 3.985 3 C -0.203 4.203 4 O -0.220 6.220 5 C 0.024 3.976 6 C -0.090 4.090 7 N -0.159 5.159 8 C -0.069 4.069 9 C -0.102 4.102 10 C 0.278 3.722 11 O -0.462 6.462 12 N -0.119 5.119 13 C -0.439 4.439 14 H 0.112 0.888 15 C -0.161 4.161 16 N -0.499 5.499 17 Si 0.750 3.250 18 H -0.203 1.203 19 H -0.193 1.193 20 H -0.207 1.207 21 C 0.016 3.984 22 C -0.173 4.173 23 C -0.257 4.257 24 C -0.160 4.160 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.175 0.825 33 H 0.183 0.817 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.451 11.386 6.560 13.148 hybrid contribution -0.835 -0.260 -1.583 1.809 sum -1.286 11.126 4.977 12.256 Atomic orbital electron populations 1.22361 0.94981 1.03355 1.02977 1.22478 0.94470 0.93673 0.87833 1.21826 1.02085 0.93429 1.02921 1.86096 1.81239 1.15615 1.39062 1.19978 0.98658 0.83491 0.95446 1.22156 1.00472 0.89395 0.97010 1.67703 1.14137 1.06889 1.27150 1.23142 0.95560 1.00807 0.87377 1.21157 0.98930 0.93714 0.96367 1.17805 0.82628 0.84295 0.87452 1.90634 1.57757 1.70942 1.26818 1.42945 1.44104 1.20042 1.04854 1.19503 1.42923 0.89002 0.92461 0.88786 1.25402 0.96146 0.96552 0.98014 1.69839 1.43359 1.08377 1.28350 0.85967 0.78564 0.78749 0.81753 1.20307 1.19261 1.20718 1.21303 0.93745 0.98550 0.84849 1.22708 0.98163 0.94994 1.01484 1.23515 1.07375 0.96283 0.98480 1.21729 1.02413 0.94186 0.97680 0.91746 0.91488 0.90950 0.90568 0.91649 0.90542 0.91540 0.82494 0.81691 0.91994 0.87324 0.89098 0.89572 0.89415 0.90127 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 9.24 37.16 0.34 -1.57 16 2 C 0.07 0.83 2.86 -26.73 -0.08 0.75 16 3 C -0.15 -1.27 9.56 37.16 0.36 -0.92 16 4 O -0.31 -4.24 9.81 -19.48 -0.19 -4.43 16 5 C 0.07 1.12 6.59 -39.13 -0.26 0.87 16 6 C 0.07 1.05 11.13 -17.29 -0.19 0.86 16 7 N -0.45 -7.79 10.34 -12.77 -0.13 -7.92 16 8 C 0.09 1.68 8.65 -17.11 -0.15 1.53 16 9 C -0.10 -1.96 4.79 -104.84 -0.50 -2.46 16 10 C 0.49 12.09 7.23 -12.38 -0.09 12.00 16 11 O -0.58 -16.10 16.82 5.29 0.09 -16.02 16 12 N -0.40 -10.01 2.90 -108.83 -0.32 -10.32 16 13 C -0.31 -8.33 8.54 -15.00 -0.13 -8.46 16 14 H 0.09 2.63 7.65 -52.48 -0.40 2.23 16 15 C 0.05 1.14 5.00 -17.45 -0.09 1.05 16 16 N -0.86 -21.77 10.74 55.50 0.60 -21.18 16 17 Si 0.92 20.09 29.56 -169.99 -5.02 15.06 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 C 0.12 2.60 2.22 -67.93 -0.15 2.45 16 22 C -0.14 -2.73 8.68 -26.73 -0.23 -2.96 16 23 C -0.22 -4.03 8.47 -26.73 -0.23 -4.26 16 24 C -0.13 -2.37 8.06 -38.70 -0.31 -2.68 16 25 H 0.06 0.80 7.24 -51.93 -0.38 0.43 16 26 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.95 6.12 -51.93 -0.32 0.63 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.17 3.13 5.60 -52.49 -0.29 2.84 16 34 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 35 H 0.11 2.38 6.61 -51.93 -0.34 2.04 16 36 H 0.09 1.96 7.92 -51.93 -0.41 1.55 16 37 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 40 H 0.14 2.44 5.75 -52.48 -0.30 2.14 16 LS Contribution 330.89 15.07 4.99 4.99 Total: -1.00 -29.53 330.89 -7.08 -36.61 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.38 Total: 7.01 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.70 Total: -3.80 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.15 Total: -39.42 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.10 Total: -20.45 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.53 -7.08 -36.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360301244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.641 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds