Wall clock time and date at job start Tue Mar 31 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47012 * 2 1 4 4 O 1.42901 * 109.46881 * 120.00135 * 2 1 3 5 5 C 1.35919 * 117.00242 * 84.24434 * 4 2 1 6 6 C 1.38863 * 120.40288 * 179.63188 * 5 4 2 7 7 N 1.31892 * 121.01327 * 180.02562 * 6 5 4 8 8 C 1.31670 * 121.95224 * 359.97438 * 7 6 5 9 9 C 1.39604 * 120.67747 * 359.97438 * 8 7 6 10 10 C 1.47732 * 120.53914 * 180.02562 * 9 8 7 11 11 O 1.21585 * 120.00378 * 223.10385 * 10 9 8 12 12 N 1.34778 * 119.99576 * 43.10104 * 10 9 8 13 13 C 1.36876 * 119.99815 * 175.48720 * 12 10 9 14 14 H 1.08004 * 120.00270 * 326.56657 * 13 12 10 15 15 C 1.39047 * 119.99773 * 146.55792 * 13 12 10 16 16 N 1.31359 * 119.99983 * 357.90836 * 15 13 12 17 17 Si 1.86799 * 119.99939 * 177.90897 * 15 13 12 18 18 H 1.48503 * 109.46999 * 269.99839 * 17 15 13 19 19 H 1.48498 * 109.47421 * 29.99761 * 17 15 13 20 20 H 1.48501 * 109.47244 * 150.00272 * 17 15 13 21 21 C 1.46499 * 120.00218 * 355.49684 * 12 10 9 22 22 C 1.53001 * 117.50134 * 134.81536 * 21 12 10 23 23 C 1.53000 * 60.00105 * 252.50811 * 22 21 12 24 24 C 1.38824 * 120.39890 * 359.91109 * 5 4 2 25 25 H 1.09004 * 109.47181 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47126 * 299.99863 * 1 2 3 27 27 H 1.08995 * 109.47279 * 59.99955 * 1 2 3 28 28 H 1.08999 * 109.46770 * 239.99628 * 2 1 3 29 29 H 1.08998 * 109.46649 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47135 * 300.00133 * 3 2 1 31 31 H 1.09000 * 109.46757 * 60.00024 * 3 2 1 32 32 H 1.07999 * 119.49446 * 0.04105 * 6 5 4 33 33 H 1.07993 * 119.66049 * 179.97438 * 8 7 6 34 34 H 0.97006 * 119.99896 * 175.02249 * 16 15 13 35 35 H 1.09005 * 115.54694 * 280.52350 * 21 12 10 36 36 H 1.09003 * 117.49513 * 359.97438 * 22 21 12 37 37 H 1.08998 * 117.50068 * 145.01864 * 22 21 12 38 38 H 1.08997 * 117.49812 * 252.51532 * 23 22 21 39 39 H 1.08994 * 117.51780 * 107.47732 * 23 22 21 40 40 H 1.08003 * 120.88684 * 359.97172 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0975 -2.0283 1.1032 6 6 2.5589 -2.7535 2.1938 7 7 2.6527 -4.0682 2.1452 8 6 2.3164 -4.7515 1.0711 9 6 1.8421 -4.0993 -0.0685 10 6 1.4651 -4.8690 -1.2718 11 8 1.7956 -4.4753 -2.3736 12 7 0.7548 -6.0078 -1.1480 13 6 0.3262 -6.6718 -2.2656 14 1 0.0540 -6.1178 -3.1518 15 6 0.2415 -8.0597 -2.2599 16 7 0.6116 -8.7359 -1.1963 17 14 -0.3988 -8.9625 -3.7646 18 1 -1.8716 -9.1201 -3.6579 19 1 -0.0716 -8.1835 -4.9858 20 1 0.2376 -10.3017 -3.8464 21 6 0.4414 -6.5347 0.1825 22 6 -0.9900 -7.0132 0.4336 23 6 -0.4970 -5.7101 1.0659 24 6 1.7359 -2.7032 -0.0548 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 2.8451 -2.2331 3.0958 33 1 2.4085 -5.8275 1.0716 34 1 0.4854 -9.6972 -1.1645 35 1 1.2478 -7.0783 0.6748 36 1 -1.6986 -6.9355 -0.3910 37 1 -1.1256 -7.8719 1.0912 38 1 -0.3081 -5.7116 2.1394 39 1 -0.8808 -4.7754 0.6573 40 1 1.3773 -2.1660 -0.9205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360301244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:19 Heat of formation + Delta-G solvation = -16.631312 kcal Electronic energy + Delta-G solvation = -23638.338273 eV Core-core repulsion = 20226.346692 eV Total energy + Delta-G solvation = -3411.991581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.95413 -40.57492 -39.20522 -38.00153 -35.01712 -34.30625 -33.43482 -32.96592 -31.18881 -28.21770 -27.49065 -25.26701 -24.98371 -23.35256 -23.02442 -21.97414 -21.34616 -19.27364 -18.85486 -18.01559 -17.73914 -17.35929 -17.06736 -16.55252 -16.07093 -15.88624 -15.46788 -15.16680 -15.02894 -14.73629 -14.32490 -13.97370 -13.94702 -13.53818 -13.31946 -13.13328 -13.03364 -12.92788 -12.82746 -12.62343 -12.29103 -12.14946 -12.01925 -11.73282 -11.66947 -11.26311 -11.04143 -10.73858 -10.65913 -10.25825 -9.68219 -9.40215 -8.31471 -6.08724 -0.18949 0.18455 1.37029 1.41710 1.51848 1.91691 2.06932 2.22744 2.71830 2.85374 2.97359 3.21413 3.48606 3.55640 3.71813 3.78860 3.93149 3.93484 4.06840 4.14120 4.17322 4.31355 4.40095 4.55991 4.67369 4.73971 4.77643 4.81525 4.86743 4.92460 5.01226 5.11285 5.17854 5.25800 5.29785 5.37546 5.40332 5.43279 6.07915 6.19448 6.45140 6.86104 7.09491 7.32946 7.91159 8.69441 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.004761 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.330910 B = 5879.888151 C = 6417.341324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 C -0.140 4.140 4 O -0.302 6.302 5 C 0.085 3.915 6 C 0.083 3.917 7 N -0.451 5.451 8 C 0.090 3.910 9 C -0.117 4.117 10 C 0.480 3.520 11 O -0.626 6.626 12 N -0.410 5.410 13 C -0.348 4.348 14 H 0.067 0.933 15 C 0.018 3.982 16 N -0.871 5.871 17 Si 0.981 3.019 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.273 1.273 21 C 0.102 3.898 22 C -0.135 4.135 23 C -0.182 4.182 24 C -0.136 4.136 25 H 0.041 0.959 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.197 0.803 33 H 0.159 0.841 34 H 0.276 0.724 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 12.878 8.166 15.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.006 3.994 3 C -0.197 4.197 4 O -0.215 6.215 5 C 0.037 3.963 6 C -0.076 4.076 7 N -0.159 5.159 8 C -0.067 4.067 9 C -0.122 4.122 10 C 0.269 3.731 11 O -0.515 6.515 12 N -0.126 5.126 13 C -0.475 4.475 14 H 0.085 0.915 15 C -0.187 4.187 16 N -0.507 5.507 17 Si 0.805 3.195 18 H -0.188 1.188 19 H -0.205 1.205 20 H -0.197 1.197 21 C -0.002 4.002 22 C -0.172 4.172 23 C -0.220 4.220 24 C -0.163 4.163 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.213 0.787 33 H 0.176 0.824 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.759 12.496 8.557 15.164 hybrid contribution -0.705 -0.473 -2.144 2.306 sum -1.464 12.022 6.413 13.704 Atomic orbital electron populations 1.22352 0.94255 1.02300 1.04491 1.22780 0.95169 0.94942 0.86480 1.21845 1.02109 0.91324 1.04414 1.86120 1.80947 1.14239 1.40156 1.19966 0.97455 0.84456 0.94457 1.22798 0.98142 0.88799 0.97891 1.67783 1.14197 1.07824 1.26115 1.22935 0.95869 1.00618 0.87321 1.20778 1.01724 0.94344 0.95377 1.18492 0.81817 0.84458 0.88292 1.90570 1.59613 1.72204 1.29076 1.43103 1.43754 1.20066 1.05678 1.19435 1.45221 0.89903 0.92990 0.91538 1.26015 0.95820 0.96437 1.00444 1.69898 1.42804 1.08789 1.29192 0.85114 0.78794 0.77469 0.78125 1.18807 1.20492 1.19739 1.21299 0.94355 1.00572 0.83996 1.22689 0.96576 0.96616 1.01366 1.23442 1.04222 0.95094 0.99260 1.21750 1.02565 0.93300 0.98672 0.94028 0.90261 0.89207 0.91924 0.91639 0.88614 0.90485 0.78657 0.82397 0.91413 0.87855 0.91015 0.87973 0.86640 0.90754 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 9.24 71.98 0.67 -2.82 16 2 C 0.06 1.33 2.86 30.59 0.09 1.41 16 3 C -0.14 -2.07 9.56 71.98 0.69 -1.38 16 4 O -0.30 -7.59 9.81 -92.63 -0.91 -8.50 16 5 C 0.08 2.50 6.59 22.56 0.15 2.65 16 6 C 0.08 2.31 11.13 84.83 0.94 3.26 16 7 N -0.45 -14.66 10.34 -194.33 -2.01 -16.67 16 8 C 0.09 3.34 8.65 85.05 0.74 4.08 16 9 C -0.12 -4.85 4.79 -20.00 -0.10 -4.95 16 10 C 0.48 24.86 7.23 86.75 0.63 25.49 16 11 O -0.63 -37.18 16.82 -3.98 -0.07 -37.24 16 12 N -0.41 -21.28 2.90 -616.49 -1.79 -23.06 16 13 C -0.35 -19.49 8.54 84.10 0.72 -18.77 16 14 H 0.07 3.99 7.65 -2.91 -0.02 3.97 16 15 C 0.02 0.94 5.00 84.96 0.42 1.36 16 16 N -0.87 -44.17 10.74 21.68 0.23 -43.94 16 17 Si 0.98 41.71 29.56 68.60 2.03 43.74 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 21 C 0.10 4.46 2.22 44.99 0.10 4.55 16 22 C -0.13 -5.38 8.68 30.59 0.27 -5.11 16 23 C -0.18 -6.56 8.47 30.60 0.26 -6.31 16 24 C -0.14 -4.86 8.06 22.84 0.18 -4.67 16 25 H 0.04 1.01 7.24 -2.39 -0.02 0.99 16 26 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.53 6.12 -2.39 -0.01 1.51 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.20 3.96 8.06 -2.91 -0.02 3.93 16 33 H 0.16 6.07 5.60 -2.91 -0.02 6.05 16 34 H 0.28 13.09 8.31 -92.70 -0.77 12.32 16 35 H 0.10 4.60 6.61 -2.38 -0.02 4.58 16 36 H 0.07 3.13 7.92 -2.39 -0.02 3.11 16 37 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 38 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 39 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.14 4.94 5.75 -2.91 -0.02 4.92 16 Total: -1.00 -65.95 330.89 4.29 -61.66 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 1.05 Total: 25.22 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 5.75 Total: -1.20 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -3.56 Total: -83.67 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.98 Total: -45.74 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -65.95 4.29 -61.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360301244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.031 kcal (2) G-P(sol) polarization free energy of solvation -65.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds