Wall clock time and date at job start Tue Mar 31 2020 06:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47276 * 2 1 4 4 C 1.50697 * 109.47196 * 239.99950 * 2 1 3 5 5 H 1.08001 * 119.99951 * 239.99554 * 4 2 1 6 6 C 1.37875 * 120.00356 * 59.99973 * 4 2 1 7 7 N 1.31517 * 119.99722 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00427 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47123 * 89.99783 * 8 6 4 10 10 H 1.48500 * 109.47294 * 210.00000 * 8 6 4 11 11 H 1.48500 * 109.47029 * 329.99693 * 8 6 4 12 12 N 1.46504 * 109.47174 * 119.99983 * 2 1 3 13 13 C 1.46500 * 120.00201 * 59.99893 * 12 2 1 14 14 C 1.34778 * 119.99820 * 240.00186 * 12 2 1 15 15 O 1.21552 * 120.00122 * 2.07851 * 14 12 2 16 16 C 1.47921 * 119.99889 * 182.07346 * 14 12 2 17 17 C 1.39476 * 119.71476 * 172.78328 * 16 14 12 18 18 C 1.38414 * 119.06778 * 180.02562 * 17 16 14 19 19 C 1.38706 * 118.72215 * 359.83410 * 18 17 16 20 20 C 1.39548 * 119.03680 * 0.19741 * 19 18 17 21 21 N 1.31295 * 120.85298 * 359.88979 * 20 19 18 22 22 O 1.35520 * 121.72326 * 180.26327 * 19 18 17 23 23 C 1.42888 * 117.74585 * 342.69636 * 22 19 18 24 24 C 1.53397 * 108.68134 * 49.18805 * 23 22 19 25 25 C 1.50486 * 119.62539 * 179.64456 * 18 17 16 26 26 H 1.08998 * 109.47202 * 60.00236 * 1 2 3 27 27 H 1.09004 * 109.47276 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47333 * 300.00303 * 1 2 3 29 29 H 0.96999 * 120.00591 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47147 * 263.77563 * 13 12 2 31 31 H 1.08998 * 109.46586 * 23.77351 * 13 12 2 32 32 H 1.08995 * 109.46651 * 143.77233 * 13 12 2 33 33 H 1.08000 * 120.46965 * 359.97438 * 17 16 14 34 34 H 1.08008 * 119.56954 * 179.86841 * 20 19 18 35 35 H 1.09002 * 109.62429 * 168.98730 * 23 22 19 36 36 H 1.08998 * 109.63279 * 289.37308 * 23 22 19 37 37 H 1.08995 * 109.69393 * 55.11949 * 24 23 22 38 38 H 1.08997 * 109.68832 * 175.69714 * 24 23 22 39 39 H 1.08992 * 109.46308 * 282.62689 * 25 18 17 40 40 H 1.09004 * 109.45401 * 42.59887 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1123 11 1 3.6293 -1.7583 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0556 1.1386 1.9105 16 6 3.3240 -0.7455 3.2675 17 6 4.2448 -0.1093 4.0998 18 6 4.7333 -0.7863 5.2039 19 6 4.2857 -2.0766 5.4463 20 6 3.3637 -2.6496 4.5696 21 7 2.9196 -1.9831 3.5292 22 8 4.7195 -2.7928 6.5119 23 6 5.9119 -2.3554 7.1665 24 6 5.7953 -0.8517 7.4466 25 6 5.7333 -0.1147 6.1058 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.7081 1.1608 -3.4844 30 1 0.8009 -2.1452 2.0913 31 1 1.4217 -2.5685 0.4777 32 1 2.5073 -2.6093 1.8877 33 1 4.5727 0.8972 3.8854 34 1 3.0110 -3.6547 4.7490 35 1 6.0325 -2.8945 8.1062 36 1 6.7722 -2.5425 6.5240 37 1 4.8859 -0.6532 8.0137 38 1 6.6632 -0.5154 8.0138 39 1 6.7171 -0.1366 5.6373 40 1 5.4338 0.9200 6.2732 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373303296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:24 Heat of formation + Delta-G solvation = -24.723898 kcal Electronic energy + Delta-G solvation = -23130.023218 eV Core-core repulsion = 19717.680716 eV Total energy + Delta-G solvation = -3412.342502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24216 -39.37346 -37.80431 -35.37199 -34.81396 -32.86808 -31.78469 -30.79304 -29.12580 -26.37722 -25.99063 -25.17677 -24.74218 -23.36410 -22.01682 -20.31886 -18.76107 -18.01782 -17.45775 -16.58634 -16.22934 -15.70774 -15.43939 -14.97838 -14.76009 -14.66071 -14.27665 -14.22485 -13.60170 -13.58597 -13.27294 -12.63894 -12.62726 -12.25746 -12.14254 -11.84721 -11.50280 -11.34455 -11.26803 -11.04076 -10.89286 -10.76150 -10.62421 -10.20489 -10.11665 -9.59497 -9.50754 -9.07070 -8.77872 -8.46378 -8.37868 -7.45835 -6.02422 -4.09989 0.84454 1.12889 2.91064 3.22015 3.30423 3.36925 3.40585 3.87596 4.12048 4.23116 4.27406 4.35113 4.42853 4.51392 4.60046 4.82170 5.01531 5.07212 5.15784 5.23369 5.28814 5.36126 5.52220 5.62578 5.74837 5.87573 6.03689 6.20316 6.33850 6.46012 6.79547 6.87137 6.94569 7.06580 7.14275 7.50595 7.58951 7.77525 7.85360 8.08472 8.25147 8.59743 8.86899 9.08031 9.55989 11.02980 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030761 B = 0.003626 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.018368 B = 7720.229609 C = 7850.759387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.255 3.745 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.567 5.567 13 C 0.083 3.917 14 C 0.554 3.446 15 O -0.553 6.553 16 C 0.060 3.940 17 C -0.078 4.078 18 C -0.131 4.131 19 C 0.091 3.909 20 C 0.071 3.929 21 N -0.414 5.414 22 O -0.308 6.308 23 C 0.058 3.942 24 C -0.160 4.160 25 C -0.080 4.080 26 H 0.093 0.907 27 H 0.031 0.969 28 H 0.011 0.989 29 H 0.263 0.737 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.167 0.833 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.699 -6.642 19.802 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.155 3.845 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.295 5.295 13 C -0.061 4.061 14 C 0.339 3.661 15 O -0.433 6.433 16 C -0.077 4.077 17 C -0.099 4.099 18 C -0.139 4.139 19 C 0.043 3.957 20 C -0.090 4.090 21 N -0.126 5.126 22 O -0.220 6.220 23 C -0.017 4.017 24 C -0.197 4.197 25 C -0.117 4.117 26 H 0.112 0.888 27 H 0.050 0.950 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.167 0.833 34 H 0.184 0.816 35 H 0.127 0.873 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.044 -6.437 19.031 21.641 hybrid contribution 1.009 -0.004 -0.273 1.045 sum 9.053 -6.441 18.758 21.802 Atomic orbital electron populations 1.22072 0.97964 0.99559 1.00763 1.19030 0.91098 0.94531 0.79857 0.91883 1.21329 1.31744 1.12965 0.90201 0.92146 1.24890 0.94994 0.94987 0.98931 1.69886 1.36437 1.22644 1.23704 0.86479 0.79204 0.79279 0.82341 1.20595 1.21136 1.19937 1.48169 1.46547 1.12445 1.22357 1.22112 1.00937 0.82256 1.00749 1.17729 0.80119 0.86173 0.82061 1.90731 1.60835 1.15522 1.76167 1.21510 0.97538 0.91172 0.97522 1.21879 0.94659 1.01231 0.92092 1.20051 1.01739 0.93770 0.98362 1.20001 0.96519 0.90500 0.88724 1.22614 0.96153 1.00884 0.89383 1.68293 1.22406 1.06997 1.14943 1.85955 1.42481 1.52276 1.41293 1.23031 0.85704 0.95251 0.97702 1.22247 1.04116 0.95533 0.97825 1.20469 0.97867 0.99852 0.93519 0.88807 0.95016 0.96994 0.92720 0.94002 0.91431 0.89257 0.83286 0.81554 0.87266 0.91555 0.90258 0.89361 0.89747 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 8.97 37.16 0.33 -3.31 16 2 C 0.25 6.81 2.63 -69.08 -0.18 6.63 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.52 -14.62 7.95 -34.44 -0.27 -14.89 16 5 H 0.06 1.67 7.44 -52.49 -0.39 1.28 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.97 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 12 N -0.57 -13.23 2.75 -176.35 -0.49 -13.71 16 13 C 0.08 1.62 8.24 59.85 0.49 2.12 16 14 C 0.55 12.58 7.65 -12.29 -0.09 12.49 16 15 O -0.55 -14.13 15.67 5.32 0.08 -14.05 16 16 C 0.06 1.08 6.62 -83.02 -0.55 0.53 16 17 C -0.08 -1.19 9.30 -39.06 -0.36 -1.55 16 18 C -0.13 -1.61 5.75 -104.49 -0.60 -2.21 16 19 C 0.09 1.12 6.50 -38.92 -0.25 0.86 16 20 C 0.07 0.93 11.12 -17.29 -0.19 0.74 16 21 N -0.41 -6.72 6.02 -9.61 -0.06 -6.78 16 22 O -0.31 -3.22 10.30 -18.25 -0.19 -3.41 16 23 C 0.06 0.40 7.01 37.36 0.26 0.66 16 24 C -0.16 -1.03 6.21 -26.46 -0.16 -1.19 16 25 C -0.08 -0.68 5.89 -27.92 -0.16 -0.84 16 26 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 27 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.36 7.12 -51.93 -0.37 0.99 16 32 H 0.09 1.62 5.26 -52.12 -0.27 1.34 16 33 H 0.15 2.22 7.66 -52.49 -0.40 1.82 16 34 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -32.53 325.68 -7.43 -39.95 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.45 Total: -0.12 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.84 Total: 1.74 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.08 Total: -45.46 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.10 Total: -17.45 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.53 -7.43 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373303296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.230 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds