Wall clock time and date at job start Tue Mar 31 2020 06:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47276 * 2 1 4 4 C 1.50697 * 109.47196 * 239.99950 * 2 1 3 5 5 H 1.08001 * 119.99951 * 239.99554 * 4 2 1 6 6 C 1.37875 * 120.00356 * 59.99973 * 4 2 1 7 7 N 1.31517 * 119.99722 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00427 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47123 * 89.99783 * 8 6 4 10 10 H 1.48500 * 109.47294 * 210.00000 * 8 6 4 11 11 H 1.48500 * 109.47029 * 329.99693 * 8 6 4 12 12 N 1.46504 * 109.47174 * 119.99983 * 2 1 3 13 13 C 1.46500 * 120.00201 * 59.99893 * 12 2 1 14 14 C 1.34778 * 119.99820 * 240.00186 * 12 2 1 15 15 O 1.21552 * 120.00122 * 2.07851 * 14 12 2 16 16 C 1.47921 * 119.99889 * 182.07346 * 14 12 2 17 17 C 1.39476 * 119.71476 * 172.78328 * 16 14 12 18 18 C 1.38414 * 119.06778 * 180.02562 * 17 16 14 19 19 C 1.38706 * 118.72215 * 359.83410 * 18 17 16 20 20 C 1.39548 * 119.03680 * 0.19741 * 19 18 17 21 21 N 1.31295 * 120.85298 * 359.88979 * 20 19 18 22 22 O 1.35520 * 121.72326 * 180.26327 * 19 18 17 23 23 C 1.42888 * 117.74585 * 342.69636 * 22 19 18 24 24 C 1.53397 * 108.68134 * 49.18805 * 23 22 19 25 25 C 1.50486 * 119.62539 * 179.64456 * 18 17 16 26 26 H 1.08998 * 109.47202 * 60.00236 * 1 2 3 27 27 H 1.09004 * 109.47276 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47333 * 300.00303 * 1 2 3 29 29 H 0.96999 * 120.00591 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47147 * 263.77563 * 13 12 2 31 31 H 1.08998 * 109.46586 * 23.77351 * 13 12 2 32 32 H 1.08995 * 109.46651 * 143.77233 * 13 12 2 33 33 H 1.08000 * 120.46965 * 359.97438 * 17 16 14 34 34 H 1.08008 * 119.56954 * 179.86841 * 20 19 18 35 35 H 1.09002 * 109.62429 * 168.98730 * 23 22 19 36 36 H 1.08998 * 109.63279 * 289.37308 * 23 22 19 37 37 H 1.08995 * 109.69393 * 55.11949 * 24 23 22 38 38 H 1.08997 * 109.68832 * 175.69714 * 24 23 22 39 39 H 1.08992 * 109.46308 * 282.62689 * 25 18 17 40 40 H 1.09004 * 109.45401 * 42.59887 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1123 11 1 3.6293 -1.7583 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0556 1.1386 1.9105 16 6 3.3240 -0.7455 3.2675 17 6 4.2448 -0.1093 4.0998 18 6 4.7333 -0.7863 5.2039 19 6 4.2857 -2.0766 5.4463 20 6 3.3637 -2.6496 4.5696 21 7 2.9196 -1.9831 3.5292 22 8 4.7195 -2.7928 6.5119 23 6 5.9119 -2.3554 7.1665 24 6 5.7953 -0.8517 7.4466 25 6 5.7333 -0.1147 6.1058 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.7081 1.1608 -3.4844 30 1 0.8009 -2.1452 2.0913 31 1 1.4217 -2.5685 0.4777 32 1 2.5073 -2.6093 1.8877 33 1 4.5727 0.8972 3.8854 34 1 3.0110 -3.6547 4.7490 35 1 6.0325 -2.8945 8.1062 36 1 6.7722 -2.5425 6.5240 37 1 4.8859 -0.6532 8.0137 38 1 6.6632 -0.5154 8.0138 39 1 6.7171 -0.1366 5.6373 40 1 5.4338 0.9200 6.2732 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373303296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:23 Heat of formation + Delta-G solvation = -45.297406 kcal Electronic energy + Delta-G solvation = -23130.915352 eV Core-core repulsion = 19717.680716 eV Total energy + Delta-G solvation = -3413.234636 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.27347 -40.78226 -39.09567 -37.23771 -35.68379 -34.79236 -32.81079 -32.09691 -30.91856 -27.63652 -27.33308 -27.10719 -25.93864 -24.39862 -23.44459 -21.63154 -20.21215 -18.95529 -18.66889 -18.44393 -17.67547 -17.23906 -16.58127 -16.54992 -16.18301 -15.79140 -15.61204 -15.03973 -14.97072 -14.62921 -14.41711 -14.33598 -13.95824 -13.82695 -13.59680 -13.38227 -13.01944 -12.82633 -12.68158 -12.67514 -12.33912 -12.21047 -12.13015 -11.86104 -11.66027 -11.27139 -11.09784 -10.58074 -10.54602 -10.18236 -9.57246 -9.25464 -8.15442 -6.32344 -0.35706 0.08214 1.41304 1.42882 1.53290 1.75459 2.09941 2.28304 2.46007 2.76312 3.12050 3.18786 3.44447 3.48954 3.66895 3.88658 3.91132 4.08521 4.28077 4.51069 4.55352 4.64797 4.66449 4.72544 4.76528 4.85215 4.88492 4.90658 4.93768 5.03683 5.06311 5.15379 5.18737 5.41676 5.45035 5.59622 5.66562 5.99868 6.14167 6.17861 6.64479 6.73739 6.81272 7.24126 7.42000 8.89454 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030761 B = 0.003626 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.018368 B = 7720.229609 C = 7850.759387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.259 3.741 3 H 0.013 0.987 4 C -0.541 4.541 5 H 0.059 0.941 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.578 5.578 13 C 0.090 3.910 14 C 0.545 3.455 15 O -0.598 6.598 16 C 0.027 3.973 17 C -0.080 4.080 18 C -0.127 4.127 19 C 0.108 3.892 20 C 0.071 3.929 21 N -0.428 5.428 22 O -0.309 6.309 23 C 0.047 3.953 24 C -0.153 4.153 25 C -0.084 4.084 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.017 0.983 29 H 0.266 0.734 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.198 0.802 35 H 0.140 0.860 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.281 -9.008 22.004 25.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.157 3.843 3 H 0.031 0.969 4 C -0.579 4.579 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.306 5.306 13 C -0.053 4.053 14 C 0.333 3.667 15 O -0.481 6.481 16 C -0.108 4.108 17 C -0.101 4.101 18 C -0.136 4.136 19 C 0.059 3.941 20 C -0.092 4.092 21 N -0.140 5.140 22 O -0.221 6.221 23 C -0.027 4.027 24 C -0.190 4.190 25 C -0.121 4.121 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.160 0.840 34 H 0.215 0.785 35 H 0.158 0.842 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.117 0.883 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.628 -8.826 21.262 24.953 hybrid contribution 0.612 0.691 -0.734 1.179 sum 10.239 -8.136 20.528 24.340 Atomic orbital electron populations 1.21865 0.96955 1.00091 0.99970 1.18669 0.91842 0.92351 0.81448 0.96935 1.21534 1.32164 1.13106 0.91087 0.92323 1.25758 0.94989 0.95632 1.02009 1.70022 1.37166 1.23818 1.24563 0.85394 0.78812 0.78265 0.78175 1.19146 1.20790 1.19641 1.48178 1.47040 1.13756 1.21640 1.22228 1.02252 0.80191 1.00583 1.18442 0.79236 0.85952 0.83059 1.90676 1.62265 1.17560 1.77567 1.20813 1.00254 0.92567 0.97190 1.21869 0.94357 1.01126 0.92778 1.20386 1.01804 0.93787 0.97580 1.20034 0.95235 0.90255 0.88598 1.23074 0.95901 1.01656 0.88553 1.68040 1.23043 1.06301 1.16644 1.85972 1.43894 1.52059 1.40189 1.23463 0.84374 0.96006 0.98850 1.22261 1.05383 0.94852 0.96551 1.20638 0.97231 1.00130 0.94078 0.90919 0.93621 0.96352 0.92485 0.92640 0.92368 0.87473 0.83983 0.78525 0.84212 0.90568 0.90696 0.86256 0.88335 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 8.97 71.98 0.65 -6.13 16 2 C 0.26 14.53 2.63 44.24 0.12 14.65 16 3 H 0.01 0.83 6.90 -2.39 -0.02 0.81 16 4 C -0.54 -31.10 7.95 25.60 0.20 -30.90 16 5 H 0.06 3.31 7.44 -2.91 -0.02 3.29 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -54.36 11.32 21.45 0.24 -54.12 16 8 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.58 -28.11 2.75 -830.12 -2.29 -30.40 16 13 C 0.09 3.53 8.24 127.77 1.05 4.58 16 14 C 0.55 26.11 7.65 86.81 0.66 26.77 16 15 O -0.60 -32.80 15.67 -3.88 -0.06 -32.86 16 16 C 0.03 0.99 6.62 41.86 0.28 1.27 16 17 C -0.08 -2.47 9.30 22.61 0.21 -2.26 16 18 C -0.13 -2.89 5.75 -19.78 -0.11 -3.01 16 19 C 0.11 2.36 6.50 22.70 0.15 2.51 16 20 C 0.07 1.70 11.12 85.09 0.95 2.65 16 21 N -0.43 -13.58 6.02 -184.32 -1.11 -14.69 16 22 O -0.31 -5.25 10.30 -88.23 -0.91 -6.15 16 23 C 0.05 0.43 7.01 72.12 0.51 0.94 16 24 C -0.15 -1.32 6.21 30.77 0.19 -1.13 16 25 C -0.08 -1.18 5.89 29.82 0.18 -1.01 16 26 H 0.07 4.09 6.07 -2.39 -0.01 4.07 16 27 H 0.04 2.18 7.67 -2.39 -0.02 2.16 16 28 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 2.36 7.12 -2.39 -0.02 2.35 16 32 H 0.11 3.85 5.26 -2.76 -0.01 3.83 16 33 H 0.14 4.45 7.66 -2.91 -0.02 4.43 16 34 H 0.20 3.41 8.06 -2.91 -0.02 3.38 16 35 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -74.57 325.68 4.42 -70.15 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.05 Total: 11.38 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 5.47 Total: 10.28 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -3.15 Total: -99.21 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.97 Total: -39.02 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -74.57 4.42 -70.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373303296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.854 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds