Wall clock time and date at job start Tue Mar 31 2020 06:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46883 * 2 1 4 4 C 1.52993 * 109.47307 * 239.99804 * 2 1 3 5 5 C 1.50693 * 109.47419 * 169.49323 * 4 2 1 6 6 H 1.08006 * 119.99856 * 354.02411 * 5 4 2 7 7 C 1.37884 * 120.00288 * 174.02633 * 5 4 2 8 8 N 1.31514 * 119.99935 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99942 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46909 * 90.00103 * 9 7 5 11 11 H 1.48495 * 109.46911 * 210.00088 * 9 7 5 12 12 H 1.48506 * 109.46906 * 330.00129 * 9 7 5 13 13 N 1.46898 * 109.46809 * 119.99642 * 2 1 3 14 14 C 1.47162 * 110.99779 * 195.83388 * 13 2 1 15 15 C 1.52891 * 108.66789 * 52.07350 * 14 13 2 16 16 C 1.51162 * 109.71981 * 50.34776 * 15 14 13 17 17 C 1.38675 * 118.40963 * 163.36878 * 16 15 14 18 18 C 1.38029 * 120.35035 * 179.62874 * 17 16 15 19 19 C 1.38265 * 119.82542 * 0.02562 * 18 17 16 20 20 N 1.48015 * 120.06623 * 180.09802 * 19 18 17 21 21 O 1.21805 * 120.00216 * 179.97438 * 20 19 18 22 22 O 1.21806 * 120.00190 * 359.97438 * 20 19 18 23 23 C 1.38010 * 119.87001 * 0.07618 * 19 18 17 24 24 C 1.37826 * 121.73585 * 343.15425 * 16 15 14 25 25 C 1.46632 * 111.00113 * 318.83100 * 13 2 1 26 26 H 1.09002 * 109.47363 * 307.39625 * 1 2 3 27 27 H 1.09002 * 109.46897 * 67.39394 * 1 2 3 28 28 H 1.08993 * 109.47269 * 187.39068 * 1 2 3 29 29 H 1.09001 * 109.47428 * 289.49642 * 4 2 1 30 30 H 1.09005 * 109.47254 * 49.49017 * 4 2 1 31 31 H 0.97003 * 120.00016 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.62783 * 171.87480 * 14 13 2 33 33 H 1.09000 * 109.63242 * 292.26125 * 14 13 2 34 34 H 1.08997 * 109.39187 * 170.65851 * 15 14 13 35 35 H 1.09002 * 109.38523 * 290.35495 * 15 14 13 36 36 H 1.08003 * 119.82609 * 359.65235 * 17 16 15 37 37 H 1.08002 * 120.09357 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.81552 * 179.97438 * 23 19 18 39 39 H 1.08994 * 109.27202 * 49.36954 * 25 13 2 40 40 H 1.09008 * 109.26822 * 168.87772 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5245 -0.5009 -1.3856 6 1 4.0348 0.1713 -0.7116 7 6 4.2313 -1.1573 -2.3708 8 7 5.5268 -0.9646 -2.4902 9 14 3.3488 -2.3205 -3.5361 10 1 2.8758 -1.5659 -4.7245 11 1 4.2829 -3.3906 -3.9687 12 1 2.1861 -2.9293 -2.8412 13 7 2.0196 -0.6924 1.1995 14 6 3.4415 -0.3961 1.4360 15 6 3.6328 1.1208 1.4304 16 6 2.6237 1.7656 2.3528 17 6 2.8433 3.0726 2.7607 18 6 1.9438 3.7029 3.5966 19 6 0.8180 3.0273 4.0300 20 7 -0.1513 3.6988 4.9247 21 8 -1.1429 3.1027 5.3055 22 8 0.0427 4.8475 5.2803 23 6 0.5995 1.7258 3.6264 24 6 1.5031 1.0906 2.7867 25 6 1.2232 -0.3314 2.3765 26 1 -0.3634 0.6241 0.8164 27 1 -0.3633 0.3950 -0.9487 28 1 -0.3633 -1.0190 0.1322 29 1 1.8378 -1.7887 -1.1605 30 1 1.5318 -0.3272 -2.1293 31 1 6.0241 -1.4267 -3.1831 32 1 3.7439 -0.7998 2.4023 33 1 4.0452 -0.8444 0.6468 34 1 4.6417 1.3596 1.7668 35 1 3.4914 1.4996 0.4181 36 1 3.7227 3.6004 2.4222 37 1 2.1187 4.7212 3.9113 38 1 -0.2799 1.1987 3.9658 39 1 0.1643 -0.4359 2.1403 40 1 1.4756 -0.9992 3.2003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411321871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:12 Heat of formation + Delta-G solvation = 33.458167 kcal Electronic energy + Delta-G solvation = -23592.697014 eV Core-core repulsion = 20182.877476 eV Total energy + Delta-G solvation = -3409.819538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.22940 -40.70368 -37.86381 -36.60564 -33.70966 -33.24162 -32.04603 -30.89228 -29.71193 -27.89999 -26.24398 -24.94188 -23.04079 -22.73555 -22.33664 -21.04033 -19.36021 -18.72462 -18.04621 -17.57110 -17.02478 -16.28293 -15.64036 -15.28734 -14.95695 -14.58080 -14.37235 -14.05525 -13.85052 -13.10126 -12.73047 -12.40335 -12.37493 -12.07411 -11.88440 -11.82254 -11.65164 -11.59350 -11.48935 -11.25162 -11.20186 -10.96326 -10.92873 -10.55280 -10.27855 -9.82314 -9.52867 -9.37854 -9.15847 -9.00025 -8.59773 -7.84113 -6.13775 -4.10369 -0.19101 0.84157 1.32254 1.37343 3.16914 3.25733 3.34694 3.38755 4.23136 4.31442 4.38574 4.39656 4.54908 4.74579 4.87981 5.03896 5.20840 5.32646 5.44351 5.48557 5.50765 5.55527 5.64166 5.68334 5.72845 5.75930 5.85226 5.98867 6.13259 6.15425 6.30908 6.40000 6.47010 6.54754 6.65438 6.92247 7.06679 7.21974 7.54563 7.60198 7.69146 7.75976 8.40217 8.85740 9.49150 10.97445 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.004123 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.884086 B = 6789.093463 C = 7239.732942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.083 3.917 3 H 0.044 0.956 4 C -0.008 4.008 5 C -0.526 4.526 6 H 0.087 0.913 7 C 0.070 3.930 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.263 1.263 13 N -0.505 5.505 14 C 0.041 3.959 15 C -0.131 4.131 16 C -0.010 4.010 17 C -0.120 4.120 18 C -0.061 4.061 19 C -0.056 4.056 20 N 0.034 4.966 21 O -0.168 6.168 22 O -0.170 6.170 23 C -0.051 4.051 24 C -0.107 4.107 25 C 0.078 3.922 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.031 0.969 30 H 0.014 0.986 31 H 0.263 0.737 32 H 0.059 0.941 33 H 0.139 0.861 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.096 0.904 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 4.807 10.488 13.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 H 0.062 0.938 4 C -0.046 4.046 5 C -0.563 4.563 6 H 0.104 0.896 7 C -0.131 4.131 8 N -0.541 5.541 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.188 1.188 13 N -0.226 5.226 14 C -0.087 4.087 15 C -0.169 4.169 16 C -0.011 4.011 17 C -0.139 4.139 18 C -0.080 4.080 19 C -0.139 4.139 20 N 0.551 4.449 21 O -0.383 6.383 22 O -0.385 6.385 23 C -0.070 4.070 24 C -0.109 4.109 25 C -0.051 4.051 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.156 0.844 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.114 0.886 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.860 3.891 9.851 12.104 hybrid contribution -0.529 0.679 -0.229 0.891 sum -6.390 4.570 9.622 12.421 Atomic orbital electron populations 1.22088 0.96623 1.01568 1.00904 1.21777 0.92652 0.96576 0.91395 0.93772 1.19653 0.97148 0.96665 0.91137 1.21349 0.91336 1.27305 1.16296 0.89568 1.24987 0.94655 0.96407 0.97097 1.69889 1.06815 1.43373 1.34024 0.86842 0.80089 0.81260 0.81478 1.20593 1.21574 1.18796 1.62687 1.02691 1.56089 1.01131 1.22760 0.90302 0.91924 1.03680 1.21549 0.96678 0.99367 0.99276 1.20502 0.94160 0.93258 0.93145 1.21238 1.00005 0.94682 0.97964 1.20935 0.91057 1.00825 0.95214 1.20994 0.94314 0.95566 1.03041 1.43670 1.01003 1.00647 0.99553 1.94521 1.18427 1.66577 1.58808 1.94514 1.81605 1.02234 1.60125 1.20992 0.99881 0.91478 0.94693 1.20706 0.93741 0.99530 0.96971 1.21500 1.00576 0.88133 0.94886 0.93850 0.92397 0.92041 0.95094 0.96823 0.92720 0.92271 0.84384 0.89565 0.87117 0.83659 0.83338 0.83290 0.88619 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 7.97 37.16 0.30 -1.99 16 2 C 0.08 1.46 1.86 -67.72 -0.13 1.33 16 3 H 0.04 0.80 5.07 -51.93 -0.26 0.54 16 4 C -0.01 -0.18 3.74 -27.89 -0.10 -0.28 16 5 C -0.53 -12.88 7.50 -34.44 -0.26 -13.14 16 6 H 0.09 2.12 4.13 -52.48 -0.22 1.90 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -25.42 13.96 55.43 0.77 -24.64 16 9 Si 0.88 20.46 27.59 -169.99 -4.69 15.77 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.26 -5.98 6.37 56.52 0.36 -5.62 16 13 N -0.50 -8.17 4.87 -228.21 -1.11 -9.28 16 14 C 0.04 0.66 5.34 -3.74 -0.02 0.64 16 15 C -0.13 -1.91 4.65 -27.71 -0.13 -2.04 16 16 C -0.01 -0.13 5.23 -104.38 -0.55 -0.68 16 17 C -0.12 -1.37 9.66 -39.50 -0.38 -1.75 16 18 C -0.06 -0.71 9.56 -39.65 -0.38 -1.09 16 19 C -0.06 -0.73 6.85 -80.02 -0.55 -1.28 16 20 N 0.03 0.49 4.45 33.93 0.15 0.64 16 21 O -0.17 -2.52 18.45 -29.46 -0.54 -3.07 16 22 O -0.17 -2.53 18.46 -29.46 -0.54 -3.08 16 23 C -0.05 -0.62 9.17 -39.48 -0.36 -0.98 16 24 C -0.11 -1.36 5.17 -104.63 -0.54 -1.90 16 25 C 0.08 1.01 5.05 -5.16 -0.03 0.98 16 26 H 0.04 0.57 6.47 -51.93 -0.34 0.24 16 27 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 29 H 0.03 0.70 6.78 -51.93 -0.35 0.34 16 30 H 0.01 0.30 7.77 -51.93 -0.40 -0.11 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 33 H 0.14 2.79 5.12 -51.93 -0.27 2.53 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.11 1.87 5.13 -51.93 -0.27 1.61 16 36 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 37 H 0.15 1.47 7.62 -52.49 -0.40 1.07 16 38 H 0.15 1.61 7.60 -52.49 -0.40 1.22 16 39 H 0.10 1.15 5.60 -51.93 -0.29 0.85 16 40 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 313.69 15.07 4.73 4.73 Total: -1.00 -27.66 313.69 -9.35 -37.01 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.89 Total: 2.34 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -3.22 Total: -20.42 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: -0.19 Total: -33.28 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -1.09 Total: -6.14 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.69 Total: 15.77 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.66 -9.35 -37.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411321871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.468 kcal (2) G-P(sol) polarization free energy of solvation -27.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds