Wall clock time and date at job start Tue Mar 31 2020 06:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46883 * 2 1 4 4 C 1.52993 * 109.47307 * 239.99804 * 2 1 3 5 5 C 1.50693 * 109.47419 * 169.49323 * 4 2 1 6 6 H 1.08006 * 119.99856 * 354.02411 * 5 4 2 7 7 C 1.37884 * 120.00288 * 174.02633 * 5 4 2 8 8 N 1.31514 * 119.99935 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99942 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46909 * 90.00103 * 9 7 5 11 11 H 1.48495 * 109.46911 * 210.00088 * 9 7 5 12 12 H 1.48506 * 109.46906 * 330.00129 * 9 7 5 13 13 N 1.46898 * 109.46809 * 119.99642 * 2 1 3 14 14 C 1.47162 * 110.99779 * 195.83388 * 13 2 1 15 15 C 1.52891 * 108.66789 * 52.07350 * 14 13 2 16 16 C 1.51162 * 109.71981 * 50.34776 * 15 14 13 17 17 C 1.38675 * 118.40963 * 163.36878 * 16 15 14 18 18 C 1.38029 * 120.35035 * 179.62874 * 17 16 15 19 19 C 1.38265 * 119.82542 * 0.02562 * 18 17 16 20 20 N 1.48015 * 120.06623 * 180.09802 * 19 18 17 21 21 O 1.21805 * 120.00216 * 179.97438 * 20 19 18 22 22 O 1.21806 * 120.00190 * 359.97438 * 20 19 18 23 23 C 1.38010 * 119.87001 * 0.07618 * 19 18 17 24 24 C 1.37826 * 121.73585 * 343.15425 * 16 15 14 25 25 C 1.46632 * 111.00113 * 318.83100 * 13 2 1 26 26 H 1.09002 * 109.47363 * 307.39625 * 1 2 3 27 27 H 1.09002 * 109.46897 * 67.39394 * 1 2 3 28 28 H 1.08993 * 109.47269 * 187.39068 * 1 2 3 29 29 H 1.09001 * 109.47428 * 289.49642 * 4 2 1 30 30 H 1.09005 * 109.47254 * 49.49017 * 4 2 1 31 31 H 0.97003 * 120.00016 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.62783 * 171.87480 * 14 13 2 33 33 H 1.09000 * 109.63242 * 292.26125 * 14 13 2 34 34 H 1.08997 * 109.39187 * 170.65851 * 15 14 13 35 35 H 1.09002 * 109.38523 * 290.35495 * 15 14 13 36 36 H 1.08003 * 119.82609 * 359.65235 * 17 16 15 37 37 H 1.08002 * 120.09357 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.81552 * 179.97438 * 23 19 18 39 39 H 1.08994 * 109.27202 * 49.36954 * 25 13 2 40 40 H 1.09008 * 109.26822 * 168.87772 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5245 -0.5009 -1.3856 6 1 4.0348 0.1713 -0.7116 7 6 4.2313 -1.1573 -2.3708 8 7 5.5268 -0.9646 -2.4902 9 14 3.3488 -2.3205 -3.5361 10 1 2.8758 -1.5659 -4.7245 11 1 4.2829 -3.3906 -3.9687 12 1 2.1861 -2.9293 -2.8412 13 7 2.0196 -0.6924 1.1995 14 6 3.4415 -0.3961 1.4360 15 6 3.6328 1.1208 1.4304 16 6 2.6237 1.7656 2.3528 17 6 2.8433 3.0726 2.7607 18 6 1.9438 3.7029 3.5966 19 6 0.8180 3.0273 4.0300 20 7 -0.1513 3.6988 4.9247 21 8 -1.1429 3.1027 5.3055 22 8 0.0427 4.8475 5.2803 23 6 0.5995 1.7258 3.6264 24 6 1.5031 1.0906 2.7867 25 6 1.2232 -0.3314 2.3765 26 1 -0.3634 0.6241 0.8164 27 1 -0.3633 0.3950 -0.9487 28 1 -0.3633 -1.0190 0.1322 29 1 1.8378 -1.7887 -1.1605 30 1 1.5318 -0.3272 -2.1293 31 1 6.0241 -1.4267 -3.1831 32 1 3.7439 -0.7998 2.4023 33 1 4.0452 -0.8444 0.6468 34 1 4.6417 1.3596 1.7668 35 1 3.4914 1.4996 0.4181 36 1 3.7227 3.6004 2.4222 37 1 2.1187 4.7212 3.9113 38 1 -0.2799 1.1987 3.9658 39 1 0.1643 -0.4359 2.1403 40 1 1.4756 -0.9992 3.2003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411321871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:12 Heat of formation + Delta-G solvation = 18.489967 kcal Electronic energy + Delta-G solvation = -23593.346084 eV Core-core repulsion = 20182.877476 eV Total energy + Delta-G solvation = -3410.468608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.30087 -41.80609 -39.02685 -37.70799 -35.23071 -34.51834 -33.50065 -32.04137 -31.00410 -29.33729 -27.39348 -26.14235 -24.34530 -23.93549 -23.54301 -22.37007 -20.53737 -19.81060 -19.26609 -18.79892 -18.64340 -17.47952 -16.70427 -16.52117 -16.33217 -15.82066 -15.58687 -15.44410 -14.91594 -14.47043 -14.10527 -13.74598 -13.68470 -13.56009 -13.24196 -13.06945 -12.81654 -12.79125 -12.66431 -12.48050 -12.35915 -12.33112 -12.28641 -12.05262 -11.82203 -11.42846 -11.10242 -10.96264 -10.60175 -10.31905 -10.06130 -9.12085 -8.16269 -6.13356 -1.25309 -0.08141 0.26921 0.33890 1.38059 1.43071 1.51534 2.20362 2.44467 3.06135 3.21351 3.32100 3.44293 3.52154 3.76817 3.88822 4.06885 4.19249 4.24708 4.29810 4.36639 4.54370 4.56604 4.61802 4.67679 4.72982 4.76553 4.84524 4.95568 5.07693 5.12753 5.21446 5.23123 5.28987 5.40759 5.46412 5.51328 5.57373 5.77299 6.27236 6.34705 6.47434 6.49335 6.90769 7.47560 8.96979 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.004123 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.884086 B = 6789.093463 C = 7239.732942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.089 3.911 3 H 0.036 0.964 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.013 3.987 8 N -0.947 5.947 9 Si 0.926 3.074 10 H -0.277 1.277 11 H -0.295 1.295 12 H -0.252 1.252 13 N -0.517 5.517 14 C 0.045 3.955 15 C -0.121 4.121 16 C -0.019 4.019 17 C -0.114 4.114 18 C -0.056 4.056 19 C -0.065 4.065 20 N 0.034 4.966 21 O -0.180 6.180 22 O -0.181 6.181 23 C -0.045 4.045 24 C -0.108 4.108 25 C 0.080 3.920 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.021 0.979 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.111 0.889 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.069 5.158 11.655 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 H 0.054 0.946 4 C -0.046 4.046 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.753 3.247 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.176 1.176 13 N -0.239 5.239 14 C -0.083 4.083 15 C -0.159 4.159 16 C -0.019 4.019 17 C -0.132 4.132 18 C -0.075 4.075 19 C -0.148 4.148 20 N 0.549 4.451 21 O -0.393 6.393 22 O -0.394 6.394 23 C -0.065 4.065 24 C -0.111 4.111 25 C -0.048 4.048 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.184 0.816 37 H 0.184 0.816 38 H 0.182 0.818 39 H 0.129 0.871 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.546 4.246 11.037 14.028 hybrid contribution 0.012 0.606 -0.524 0.801 sum -7.534 4.852 10.513 13.814 Atomic orbital electron populations 1.22025 0.94150 1.02496 1.01901 1.21589 0.94535 0.95456 0.90356 0.94584 1.19630 0.95046 0.96548 0.93412 1.21772 0.93034 1.25402 1.14667 0.90437 1.25697 0.95173 0.98413 0.99092 1.70013 1.08278 1.45358 1.35286 0.86017 0.79286 0.79538 0.79877 1.20330 1.22110 1.17567 1.62576 1.02801 1.56417 1.02059 1.22493 0.90155 0.92941 1.02707 1.21316 0.98001 0.98155 0.98412 1.20417 0.94039 0.94084 0.93396 1.21419 1.00554 0.93990 0.97240 1.21156 0.90299 1.01542 0.94503 1.21167 0.94469 0.96013 1.03196 1.43870 1.01099 1.00582 0.99552 1.94513 1.18986 1.66564 1.59281 1.94508 1.81733 1.02602 1.60532 1.21073 1.00086 0.91201 0.94094 1.20626 0.93758 0.99386 0.97322 1.21568 1.00764 0.88631 0.93857 0.91846 0.92220 0.91370 0.96045 0.96955 0.93119 0.90609 0.88860 0.88571 0.89804 0.81560 0.81605 0.81775 0.87112 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 7.97 71.98 0.57 -3.40 16 2 C 0.09 2.97 1.86 44.91 0.08 3.06 16 3 H 0.04 1.28 5.07 -2.39 -0.01 1.27 16 4 C -0.01 -0.36 3.74 29.84 0.11 -0.25 16 5 C -0.51 -25.50 7.50 25.60 0.19 -25.31 16 6 H 0.08 3.94 4.13 -2.91 -0.01 3.93 16 7 C 0.01 0.69 5.47 84.66 0.46 1.15 16 8 N -0.95 -55.09 13.96 21.45 0.30 -54.79 16 9 Si 0.93 42.51 27.59 68.60 1.89 44.40 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 12 H -0.25 -10.94 6.37 99.48 0.63 -10.30 16 13 N -0.52 -15.95 4.87 -875.92 -4.27 -20.22 16 14 C 0.04 1.44 5.34 86.22 0.46 1.90 16 15 C -0.12 -3.45 4.65 29.96 0.14 -3.31 16 16 C -0.02 -0.45 5.23 -19.71 -0.10 -0.55 16 17 C -0.11 -2.28 9.66 22.32 0.22 -2.07 16 18 C -0.06 -1.13 9.56 22.23 0.21 -0.92 16 19 C -0.07 -1.52 6.85 36.33 0.25 -1.27 16 20 N 0.03 0.92 4.45 -46.58 -0.21 0.71 16 21 O -0.18 -5.04 18.45 18.88 0.35 -4.69 16 22 O -0.18 -5.03 18.46 18.88 0.35 -4.68 16 23 C -0.04 -0.96 9.17 22.34 0.20 -0.76 16 24 C -0.11 -2.46 5.17 -19.87 -0.10 -2.56 16 25 C 0.08 1.83 5.05 85.58 0.43 2.27 16 26 H 0.06 1.45 6.47 -2.39 -0.02 1.44 16 27 H 0.06 1.58 8.07 -2.39 -0.02 1.56 16 28 H 0.07 1.74 8.06 -2.39 -0.02 1.72 16 29 H 0.02 0.94 6.78 -2.39 -0.02 0.93 16 30 H 0.01 0.52 7.77 -2.38 -0.02 0.50 16 31 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.08 2.15 8.05 -2.38 -0.02 2.13 16 33 H 0.09 3.89 5.12 -2.39 -0.01 3.88 16 34 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.08 2.87 5.13 -2.39 -0.01 2.86 16 36 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 37 H 0.17 2.76 7.62 -2.91 -0.02 2.74 16 38 H 0.16 2.98 7.60 -2.91 -0.02 2.96 16 39 H 0.11 2.23 5.60 -2.39 -0.01 2.22 16 40 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -59.94 313.69 2.54 -57.40 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.00 Total: 13.91 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 3.13 Total: -32.02 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -4.18 Total: -74.31 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.70 Total: -9.37 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.89 Total: 44.40 kcal Total: -59.94 2.54 -57.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411321871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.887 kcal (2) G-P(sol) polarization free energy of solvation -59.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds