Wall clock time and date at job start Tue Mar 31 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99939 * 2 1 4 4 O 1.42903 * 109.47103 * 134.99982 * 3 2 1 5 5 C 1.35899 * 116.99930 * 180.02562 * 4 3 2 6 6 C 1.38747 * 120.05586 * 359.97438 * 5 4 3 7 7 C 1.38125 * 119.94590 * 180.02562 * 6 5 4 8 8 C 1.38289 * 120.05159 * 359.97438 * 7 6 5 9 9 C 1.38243 * 120.11362 * 0.02562 * 8 7 6 10 10 C 1.38163 * 120.05438 * 359.97438 * 9 8 7 11 11 C 1.50708 * 120.02715 * 179.97438 * 10 9 8 12 12 N 1.46498 * 109.47357 * 260.02510 * 11 10 9 13 13 C 1.34772 * 120.00011 * 180.02562 * 12 11 10 14 14 O 1.21583 * 120.00232 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99898 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99855 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.46967 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00279 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99857 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00095 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46868 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47331 * 120.00106 * 21 19 17 24 24 H 1.48496 * 109.46996 * 240.00424 * 21 19 17 25 25 H 1.08006 * 119.99952 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00267 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99667 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47303 * 14.99672 * 3 2 1 29 29 H 1.08995 * 109.46897 * 254.99752 * 3 2 1 30 30 H 1.08000 * 120.03046 * 0.02562 * 6 5 4 31 31 H 1.07993 * 119.97844 * 179.72247 * 7 6 5 32 32 H 1.08004 * 119.94567 * 179.97438 * 8 7 6 33 33 H 1.08001 * 119.97538 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47162 * 20.02710 * 11 10 9 35 35 H 1.09005 * 109.46612 * 140.02285 * 11 10 9 36 36 H 0.97001 * 119.99694 * 359.97438 * 12 11 10 37 37 H 0.97001 * 119.99807 * 359.97438 * 15 13 12 38 38 H 1.09000 * 109.47558 * 300.00352 * 16 15 13 39 39 H 1.09002 * 109.47314 * 60.00361 * 16 15 13 40 40 H 0.97007 * 119.99894 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9091 2.3453 1.0790 6 6 3.6589 3.4669 0.3015 7 6 4.4558 4.5876 0.4313 8 6 5.5019 4.5924 1.3357 9 6 5.7533 3.4762 2.1115 10 6 4.9590 2.3527 1.9854 11 6 5.2339 1.1359 2.8310 12 7 5.9716 0.1479 2.0400 13 6 6.3285 -1.0279 2.5935 14 8 6.0386 -1.2686 3.7494 15 7 7.0068 -1.9371 1.8655 16 6 7.3952 -3.2150 2.4673 17 6 8.1360 -4.0446 1.4504 18 1 8.3013 -3.6584 0.4555 19 6 8.6026 -5.2967 1.7902 20 7 8.4009 -5.7673 3.0016 21 14 9.5215 -6.3248 0.5299 22 1 9.6148 -5.5741 -0.7481 23 1 10.8874 -6.6194 1.0324 24 1 8.7920 -7.5982 0.3032 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3855 2.1161 0.2659 29 1 2.4755 1.4867 -0.9926 30 1 2.8417 3.4637 -0.4047 31 1 4.2643 5.4593 -0.1768 32 1 6.1242 5.4695 1.4355 33 1 6.5711 3.4823 2.8168 34 1 5.8276 1.4232 3.6989 35 1 4.2900 0.7038 3.1635 36 1 6.2026 0.3398 1.1176 37 1 7.2377 -1.7453 0.9431 38 1 8.0405 -3.0310 3.3263 39 1 6.5027 -3.7502 2.7915 40 1 8.7289 -6.6484 3.2405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426431377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:31 Heat of formation + Delta-G solvation = -25.609280 kcal Electronic energy + Delta-G solvation = -22057.206316 eV Core-core repulsion = 18644.825421 eV Total energy + Delta-G solvation = -3412.380895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55575 -38.95496 -37.81624 -34.79228 -34.27992 -33.87062 -32.28639 -31.22090 -30.13199 -27.38482 -26.85974 -25.51571 -22.55362 -22.44320 -21.57115 -20.11231 -20.03187 -18.38172 -17.95827 -16.65007 -16.30347 -16.11954 -15.69387 -15.36480 -15.00936 -14.69287 -14.54542 -14.45077 -13.67960 -13.54421 -13.19947 -13.02336 -12.76269 -12.66022 -12.62912 -11.90577 -11.77910 -11.51311 -11.43155 -11.41481 -10.96195 -10.86534 -10.85927 -10.24889 -9.80642 -9.44509 -9.28818 -9.07007 -8.68469 -8.55552 -8.36887 -7.64320 -6.09915 -4.15887 1.02503 1.21164 1.77462 3.12767 3.27498 3.32713 3.35726 3.39153 3.82479 4.09747 4.38359 4.43245 4.51715 4.64022 4.73580 4.83317 4.87041 5.05703 5.10557 5.17602 5.26095 5.28065 5.40801 5.56448 5.62552 5.72288 6.04230 6.07879 6.23129 6.25976 6.29409 6.35258 6.57355 6.99873 7.18465 7.24695 7.61406 7.65321 7.65726 8.00085 8.13597 8.84457 9.05874 9.42847 9.57997 11.00446 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.003364 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.254597 B = 8320.623301 C = 9281.799462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.154 4.154 3 C 0.087 3.913 4 O -0.299 6.299 5 C 0.147 3.853 6 C -0.215 4.215 7 C -0.076 4.076 8 C -0.162 4.162 9 C -0.061 4.061 10 C -0.134 4.134 11 C 0.193 3.807 12 N -0.749 5.749 13 C 0.694 3.306 14 O -0.603 6.603 15 N -0.731 5.731 16 C 0.267 3.733 17 C -0.539 4.539 18 H 0.062 0.938 19 C 0.062 3.938 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.283 1.283 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.390 0.610 37 H 0.385 0.615 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.108 21.246 -8.572 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.013 3.987 4 O -0.212 6.212 5 C 0.101 3.899 6 C -0.234 4.234 7 C -0.094 4.094 8 C -0.180 4.180 9 C -0.080 4.080 10 C -0.135 4.135 11 C 0.068 3.932 12 N -0.406 5.406 13 C 0.394 3.606 14 O -0.482 6.482 15 N -0.383 5.383 16 C 0.146 3.854 17 C -0.578 4.578 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.209 1.209 25 H 0.127 0.873 26 H 0.116 0.884 27 H 0.141 0.859 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.223 0.777 37 H 0.217 0.783 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.330 20.602 -7.242 25.078 hybrid contribution 0.567 -0.252 -1.723 1.831 sum -11.763 20.349 -8.964 25.156 Atomic orbital electron populations 1.23864 0.95382 1.02478 0.99295 1.22717 0.95705 0.97995 1.00795 1.21837 0.87847 0.96907 0.92154 1.86223 1.41723 1.35118 1.58112 1.18879 0.90737 0.86008 0.94271 1.21227 1.03933 0.94384 1.03825 1.20955 0.94205 0.97202 0.97081 1.21057 0.99479 0.98949 0.98512 1.21014 0.97445 0.91653 0.97881 1.19389 0.96527 0.97478 1.00129 1.19687 0.96937 0.84648 0.91907 1.45117 1.62699 1.17064 1.15731 1.16130 0.79363 0.79958 0.85160 1.90862 1.61691 1.79031 1.16634 1.45690 1.58745 1.18827 1.15016 1.18961 0.95332 0.77305 0.93829 1.21281 1.36964 1.01256 0.98275 0.91946 1.24948 0.96042 0.97516 0.95588 1.69999 1.45482 1.18312 1.18554 0.86369 0.79399 0.80034 0.81125 1.19695 1.20839 1.20858 0.87347 0.88423 0.85872 0.91608 0.91033 0.85530 0.85864 0.85772 0.84963 0.91298 0.90938 0.77727 0.78276 0.95792 0.95802 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 14.31 29.01 0.42 -0.93 16 2 C -0.15 -1.46 9.89 -36.03 -0.36 -1.82 16 3 C 0.09 0.80 5.15 36.00 0.19 0.98 16 4 O -0.30 -3.71 9.35 -19.42 -0.18 -3.90 16 5 C 0.15 1.71 6.66 -39.22 -0.26 1.45 16 6 C -0.21 -2.00 9.04 -39.43 -0.36 -2.35 16 7 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 8 C -0.16 -1.40 10.04 -39.56 -0.40 -1.79 16 9 C -0.06 -0.62 9.67 -39.61 -0.38 -1.00 16 10 C -0.13 -1.62 5.26 -104.47 -0.55 -2.17 16 11 C 0.19 2.88 5.46 -5.19 -0.03 2.85 16 12 N -0.75 -12.47 5.55 -66.41 -0.37 -12.84 16 13 C 0.69 15.29 8.57 -86.92 -0.74 14.55 16 14 O -0.60 -15.88 16.34 5.29 0.09 -15.80 16 15 N -0.73 -16.50 5.55 -66.42 -0.37 -16.87 16 16 C 0.27 7.40 5.43 -5.19 -0.03 7.38 16 17 C -0.54 -15.07 9.28 -34.44 -0.32 -15.39 16 18 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 21 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.11 0.75 8.06 -52.48 -0.42 0.33 16 26 H 0.10 0.61 7.90 -52.49 -0.41 0.19 16 27 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.07 0.50 7.38 -51.93 -0.38 0.11 16 29 H 0.07 0.56 7.66 -51.93 -0.40 0.16 16 30 H 0.13 0.92 6.30 -52.49 -0.33 0.58 16 31 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 33 H 0.13 1.18 8.04 -52.49 -0.42 0.75 16 34 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 35 H 0.07 1.21 7.85 -51.93 -0.41 0.80 16 36 H 0.39 5.58 8.48 -40.82 -0.35 5.23 16 37 H 0.39 7.52 8.34 -40.82 -0.34 7.18 16 38 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -34.46 349.58 -8.70 -43.16 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.53 Total: 8.29 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -3.32 Total: 2.39 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.00 Total: -55.63 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.10 Total: -19.69 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.46 -8.70 -43.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426431377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.551 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds