Wall clock time and date at job start Tue Mar 31 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99939 * 2 1 4 4 O 1.42903 * 109.47103 * 134.99982 * 3 2 1 5 5 C 1.35899 * 116.99930 * 180.02562 * 4 3 2 6 6 C 1.38747 * 120.05586 * 359.97438 * 5 4 3 7 7 C 1.38125 * 119.94590 * 180.02562 * 6 5 4 8 8 C 1.38289 * 120.05159 * 359.97438 * 7 6 5 9 9 C 1.38243 * 120.11362 * 0.02562 * 8 7 6 10 10 C 1.38163 * 120.05438 * 359.97438 * 9 8 7 11 11 C 1.50708 * 120.02715 * 179.97438 * 10 9 8 12 12 N 1.46498 * 109.47357 * 260.02510 * 11 10 9 13 13 C 1.34772 * 120.00011 * 180.02562 * 12 11 10 14 14 O 1.21583 * 120.00232 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99898 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99855 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.46967 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00279 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99857 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00095 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46868 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47331 * 120.00106 * 21 19 17 24 24 H 1.48496 * 109.46996 * 240.00424 * 21 19 17 25 25 H 1.08006 * 119.99952 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00267 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99667 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47303 * 14.99672 * 3 2 1 29 29 H 1.08995 * 109.46897 * 254.99752 * 3 2 1 30 30 H 1.08000 * 120.03046 * 0.02562 * 6 5 4 31 31 H 1.07993 * 119.97844 * 179.72247 * 7 6 5 32 32 H 1.08004 * 119.94567 * 179.97438 * 8 7 6 33 33 H 1.08001 * 119.97538 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47162 * 20.02710 * 11 10 9 35 35 H 1.09005 * 109.46612 * 140.02285 * 11 10 9 36 36 H 0.97001 * 119.99694 * 359.97438 * 12 11 10 37 37 H 0.97001 * 119.99807 * 359.97438 * 15 13 12 38 38 H 1.09000 * 109.47558 * 300.00352 * 16 15 13 39 39 H 1.09002 * 109.47314 * 60.00361 * 16 15 13 40 40 H 0.97007 * 119.99894 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9091 2.3453 1.0790 6 6 3.6589 3.4669 0.3015 7 6 4.4558 4.5876 0.4313 8 6 5.5019 4.5924 1.3357 9 6 5.7533 3.4762 2.1115 10 6 4.9590 2.3527 1.9854 11 6 5.2339 1.1359 2.8310 12 7 5.9716 0.1479 2.0400 13 6 6.3285 -1.0279 2.5935 14 8 6.0386 -1.2686 3.7494 15 7 7.0068 -1.9371 1.8655 16 6 7.3952 -3.2150 2.4673 17 6 8.1360 -4.0446 1.4504 18 1 8.3013 -3.6584 0.4555 19 6 8.6026 -5.2967 1.7902 20 7 8.4009 -5.7673 3.0016 21 14 9.5215 -6.3248 0.5299 22 1 9.6148 -5.5741 -0.7481 23 1 10.8874 -6.6194 1.0324 24 1 8.7920 -7.5982 0.3032 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3855 2.1161 0.2659 29 1 2.4755 1.4867 -0.9926 30 1 2.8417 3.4637 -0.4047 31 1 4.2643 5.4593 -0.1768 32 1 6.1242 5.4695 1.4355 33 1 6.5711 3.4823 2.8168 34 1 5.8276 1.4232 3.6989 35 1 4.2900 0.7038 3.1635 36 1 6.2026 0.3398 1.1176 37 1 7.2377 -1.7453 0.9431 38 1 8.0405 -3.0310 3.3263 39 1 6.5027 -3.7502 2.7915 40 1 8.7289 -6.6484 3.2405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426431377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:31 Heat of formation + Delta-G solvation = -49.890614 kcal Electronic energy + Delta-G solvation = -22058.259233 eV Core-core repulsion = 18644.825421 eV Total energy + Delta-G solvation = -3413.433812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43306 -40.65992 -38.61590 -36.37072 -35.76146 -34.98791 -34.34395 -32.33618 -30.89854 -29.29542 -27.62032 -26.82426 -24.52329 -23.21104 -22.50950 -21.86523 -20.81564 -19.86512 -19.06423 -18.09641 -17.48165 -17.37233 -16.90850 -16.59677 -16.36331 -16.31282 -15.59494 -15.41392 -15.13135 -14.94938 -14.45611 -14.21153 -14.05398 -13.85491 -13.64688 -13.48204 -13.39794 -12.86375 -12.74073 -12.37568 -12.21299 -12.15647 -12.14242 -11.71247 -11.44262 -11.30060 -10.81049 -10.46984 -10.27016 -9.91122 -9.57179 -9.15463 -8.27685 -6.44251 0.24870 0.47708 1.10287 1.43567 1.45541 1.58828 1.97268 2.26072 2.40395 2.40967 2.83797 3.07051 3.61701 3.63988 3.77784 3.92031 4.04298 4.14879 4.22862 4.36493 4.39190 4.52654 4.56971 4.65557 4.81177 4.93407 5.02934 5.08984 5.27710 5.36032 5.47029 5.49528 5.52708 5.57943 5.59056 5.63850 5.68778 5.85804 5.87758 6.26217 6.45713 6.67575 7.24797 7.31313 7.72940 8.85072 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.003364 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.254597 B = 8320.623301 C = 9281.799462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.184 4.184 3 C 0.086 3.914 4 O -0.329 6.329 5 C 0.132 3.868 6 C -0.215 4.215 7 C -0.069 4.069 8 C -0.160 4.160 9 C -0.066 4.066 10 C -0.155 4.155 11 C 0.196 3.804 12 N -0.723 5.723 13 C 0.692 3.308 14 O -0.650 6.650 15 N -0.723 5.723 16 C 0.286 3.714 17 C -0.554 4.554 18 H 0.083 0.917 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.988 3.012 22 H -0.254 1.254 23 H -0.277 1.277 24 H -0.278 1.278 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.405 0.595 37 H 0.403 0.597 38 H -0.014 1.014 39 H -0.016 1.016 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.109 23.451 -11.503 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.202 4.202 3 C 0.012 3.988 4 O -0.243 6.243 5 C 0.086 3.914 6 C -0.233 4.233 7 C -0.087 4.087 8 C -0.178 4.178 9 C -0.084 4.084 10 C -0.156 4.156 11 C 0.073 3.927 12 N -0.380 5.380 13 C 0.392 3.608 14 O -0.533 6.533 15 N -0.377 5.377 16 C 0.162 3.838 17 C -0.592 4.592 18 H 0.101 0.899 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.811 3.189 22 H -0.177 1.177 23 H -0.203 1.203 24 H -0.204 1.204 25 H 0.132 0.868 26 H 0.137 0.863 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.166 0.834 31 H 0.173 0.827 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.241 0.759 37 H 0.238 0.762 38 H 0.004 0.996 39 H 0.002 0.998 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.345 22.881 -10.234 27.941 hybrid contribution 0.459 -0.827 -0.787 1.231 sum -11.886 22.054 -11.021 27.370 Atomic orbital electron populations 1.24095 0.94762 1.03791 0.96645 1.22721 0.96498 0.97640 1.03352 1.22002 0.87506 0.97085 0.92229 1.86184 1.42730 1.36114 1.59268 1.19062 0.90739 0.86711 0.94869 1.21502 1.04604 0.93702 1.03492 1.21391 0.93076 0.97694 0.96508 1.21388 0.99721 0.99004 0.97668 1.21167 0.97335 0.91588 0.98355 1.19181 0.98385 0.96792 1.01226 1.19672 0.95302 0.85318 0.92450 1.44937 1.61294 1.15356 1.16406 1.16304 0.78990 0.81016 0.84508 1.90824 1.63380 1.80224 1.18880 1.45296 1.59051 1.17579 1.15771 1.18416 0.92909 0.79126 0.93319 1.21622 1.36996 1.01672 0.98896 0.89916 1.26088 0.96764 0.98932 0.97865 1.70161 1.46620 1.19039 1.21145 0.85067 0.77544 0.77828 0.78473 1.17710 1.20307 1.20388 0.86794 0.86292 0.88143 0.89723 0.89739 0.83368 0.82655 0.83186 0.84293 0.91640 0.93271 0.75941 0.76184 0.99587 0.99818 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 14.31 67.78 0.97 -1.27 16 2 C -0.18 -3.51 9.89 25.64 0.25 -3.25 16 3 C 0.09 1.49 5.15 71.24 0.37 1.85 16 4 O -0.33 -8.20 9.35 -92.41 -0.86 -9.07 16 5 C 0.13 2.94 6.66 22.50 0.15 3.09 16 6 C -0.21 -3.38 9.04 22.36 0.20 -3.18 16 7 C -0.07 -0.87 10.04 22.25 0.22 -0.65 16 8 C -0.16 -2.24 10.04 22.28 0.22 -2.01 16 9 C -0.07 -1.23 9.67 22.25 0.22 -1.02 16 10 C -0.15 -3.68 5.26 -19.77 -0.10 -3.78 16 11 C 0.20 6.10 5.46 85.64 0.47 6.57 16 12 N -0.72 -24.70 5.55 -482.29 -2.68 -27.37 16 13 C 0.69 31.76 8.57 179.05 1.53 33.30 16 14 O -0.65 -36.26 16.34 -3.98 -0.07 -36.32 16 15 N -0.72 -33.68 5.55 -482.30 -2.68 -36.36 16 16 C 0.29 16.61 5.43 85.63 0.46 17.08 16 17 C -0.55 -31.28 9.28 25.60 0.24 -31.04 16 18 H 0.08 4.24 7.60 -2.91 -0.02 4.22 16 19 C 0.00 0.17 5.46 84.65 0.46 0.63 16 20 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 21 Si 0.99 43.26 29.54 68.60 2.03 45.29 16 22 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 25 H 0.11 1.47 8.06 -2.91 -0.02 1.44 16 26 H 0.12 1.18 7.90 -2.91 -0.02 1.16 16 27 H 0.10 2.31 8.06 -2.91 -0.02 2.29 16 28 H 0.08 1.10 7.38 -2.39 -0.02 1.08 16 29 H 0.08 1.18 7.66 -2.39 -0.02 1.16 16 30 H 0.15 1.62 6.30 -2.91 -0.02 1.60 16 31 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 32 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.14 2.31 8.04 -2.91 -0.02 2.28 16 34 H 0.07 2.06 8.00 -2.39 -0.02 2.04 16 35 H 0.05 1.75 7.85 -2.38 -0.02 1.73 16 36 H 0.41 11.50 8.48 -92.71 -0.79 10.71 16 37 H 0.40 15.71 8.34 -92.71 -0.77 14.94 16 38 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 39 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 40 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -78.36 349.58 1.19 -77.17 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -0.50 Total: 27.60 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 5.67 Total: 16.31 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -5.07 Total: -120.98 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -0.93 Total: -45.39 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -78.36 1.19 -77.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426431377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.275 kcal (2) G-P(sol) polarization free energy of solvation -78.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds