Wall clock time and date at job start Tue Mar 31 2020 06:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46875 * 2 1 4 4 N 1.46893 * 109.47330 * 120.00666 * 2 1 3 5 5 C 1.46904 * 110.99924 * 273.29675 * 4 2 1 6 6 C 1.52994 * 109.47369 * 184.33581 * 5 4 2 7 7 C 1.50703 * 115.54865 * 276.40717 * 6 5 4 8 8 H 1.07996 * 120.00364 * 114.44350 * 7 6 5 9 9 C 1.37879 * 119.99754 * 294.44730 * 7 6 5 10 10 N 1.31508 * 120.00077 * 353.30311 * 9 7 6 11 11 Si 1.86805 * 119.99986 * 173.30479 * 9 7 6 12 12 H 1.48498 * 109.47180 * 59.99555 * 11 9 7 13 13 H 1.48496 * 109.46995 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46827 * 299.99770 * 11 9 7 15 15 C 1.52998 * 117.50219 * 130.69703 * 6 5 4 16 16 C 1.52994 * 60.00007 * 252.50827 * 15 6 5 17 17 C 1.50702 * 109.46748 * 240.00616 * 2 1 3 18 18 C 1.38240 * 119.99813 * 285.44879 * 17 2 1 19 19 C 1.38237 * 119.99780 * 179.79062 * 18 17 2 20 20 C 1.38241 * 120.00154 * 0.46363 * 19 18 17 21 21 N 1.48010 * 120.00188 * 179.79130 * 20 19 18 22 22 O 1.21805 * 120.00259 * 179.97438 * 21 20 19 23 23 O 1.21808 * 120.00129 * 359.97438 * 21 20 19 24 24 C 1.38235 * 119.99454 * 359.77105 * 20 19 18 25 25 C 1.38233 * 120.00553 * 0.02562 * 24 20 19 26 26 H 1.08998 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47048 * 59.99696 * 1 2 3 28 28 H 1.08996 * 109.46509 * 299.99478 * 1 2 3 29 29 H 1.00896 * 111.00374 * 149.34551 * 4 2 1 30 30 H 1.09004 * 109.47084 * 304.33419 * 5 4 2 31 31 H 1.08996 * 109.46931 * 64.32844 * 5 4 2 32 32 H 0.97001 * 120.00227 * 185.01506 * 10 9 7 33 33 H 1.09002 * 117.49790 * 0.02562 * 15 6 5 34 34 H 1.09001 * 117.49854 * 145.01894 * 15 6 5 35 35 H 1.09004 * 117.50005 * 252.50999 * 16 15 6 36 36 H 1.08999 * 117.51718 * 107.47738 * 16 15 6 37 37 H 1.07989 * 119.99897 * 0.02562 * 18 17 2 38 38 H 1.07994 * 120.00283 * 180.25790 * 19 18 17 39 39 H 1.08005 * 119.99563 * 179.97438 * 24 20 19 40 40 H 1.07999 * 119.99797 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.1209 0.2317 2.3366 6 6 2.7342 -0.4975 3.5335 7 6 1.7708 -1.3018 4.3680 8 1 1.8608 -2.3771 4.4107 9 6 0.7745 -0.6646 5.0768 10 7 0.7437 0.6489 5.1318 11 14 -0.5316 -1.6673 5.9590 12 1 0.1157 -2.5490 6.9634 13 1 -1.4811 -0.7520 6.6416 14 1 -1.2681 -2.4979 4.9726 15 6 3.8966 0.1853 4.2570 16 6 4.1565 -1.0393 3.3777 17 6 2.0323 -0.7103 -1.2306 18 6 1.9620 -2.0886 -1.3101 19 6 2.4187 -2.7398 -2.4407 20 6 2.9546 -2.0135 -3.4878 21 7 3.4478 -2.7111 -4.6964 22 8 3.9196 -2.0711 -5.6192 23 8 3.3820 -3.9253 -4.7683 24 6 3.0293 -0.6356 -3.4061 25 6 2.5687 0.0160 -2.2773 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 0.5137 0.8900 29 1 2.9043 -1.1439 1.0204 30 1 2.7530 1.0766 2.0631 31 1 1.1269 0.5924 2.6011 32 1 0.0874 1.0958 5.6889 33 1 4.2241 1.1544 3.8805 34 1 3.9646 0.0532 5.3369 35 1 4.3955 -1.9773 3.8790 36 1 4.6551 -0.8766 2.4222 37 1 1.5468 -2.6562 -0.4907 38 1 2.3600 -3.8163 -2.5047 39 1 3.4483 -0.0682 -4.2240 40 1 2.6276 1.0925 -2.2135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429800449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:50 Heat of formation + Delta-G solvation = 43.042407 kcal Electronic energy + Delta-G solvation = -22531.051665 eV Core-core repulsion = 19121.647731 eV Total energy + Delta-G solvation = -3409.403934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.27285 -39.94891 -37.39143 -36.66671 -35.52839 -32.07464 -31.84876 -31.53802 -29.46558 -26.63281 -25.83710 -24.52327 -23.46928 -22.62553 -21.29431 -20.40434 -19.46940 -19.12297 -18.73728 -17.62881 -16.86327 -15.86035 -15.73685 -15.05081 -14.70420 -14.43807 -14.17823 -14.03545 -13.77375 -13.32152 -13.19745 -12.78082 -12.04597 -11.87399 -11.76777 -11.71956 -11.60179 -11.38828 -11.25606 -11.18574 -10.97992 -10.95524 -10.68474 -10.51664 -10.30303 -9.63860 -9.56806 -9.38407 -8.99913 -8.59077 -8.18965 -7.82790 -6.06382 -4.09263 -0.29554 0.78449 1.22521 1.30171 3.10743 3.28687 3.33523 3.37021 4.15463 4.30516 4.31357 4.38026 4.50959 4.80171 4.85131 5.08281 5.16044 5.30870 5.36093 5.47484 5.49459 5.59707 5.62141 5.86641 6.01265 6.02613 6.09382 6.15083 6.23326 6.36126 6.37347 6.45717 6.51626 6.61073 6.78857 6.99279 7.31413 7.50999 7.52973 7.69895 7.88039 7.91623 8.41349 8.88388 9.53721 11.02022 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.003415 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.328181 B = 8197.499609 C = 8344.040516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.114 3.886 3 H 0.053 0.947 4 N -0.667 5.667 5 C 0.107 3.893 6 C 0.059 3.941 7 C -0.479 4.479 8 H 0.058 0.942 9 C 0.070 3.930 10 N -0.885 5.885 11 Si 0.890 3.110 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.275 1.275 15 C -0.175 4.175 16 C -0.211 4.211 17 C -0.025 4.025 18 C -0.096 4.096 19 C -0.055 4.055 20 C -0.054 4.054 21 N 0.032 4.968 22 O -0.169 6.169 23 O -0.165 6.165 24 C -0.056 4.056 25 C -0.117 4.117 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.332 0.668 30 H -0.001 1.001 31 H 0.090 0.910 32 H 0.260 0.740 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.801 -0.249 -13.838 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.004 3.996 3 H 0.071 0.929 4 N -0.299 5.299 5 C -0.021 4.021 6 C 0.058 3.942 7 C -0.517 4.517 8 H 0.076 0.924 9 C -0.132 4.132 10 N -0.522 5.522 11 Si 0.718 3.282 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.201 1.201 15 C -0.214 4.214 16 C -0.249 4.249 17 C -0.026 4.026 18 C -0.115 4.115 19 C -0.074 4.074 20 C -0.137 4.137 21 N 0.550 4.450 22 O -0.384 6.384 23 O -0.380 6.380 24 C -0.076 4.076 25 C -0.136 4.136 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.151 0.849 30 H 0.017 0.983 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.177 0.823 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.779 0.027 -13.044 13.067 hybrid contribution 0.331 -0.057 -0.007 0.336 sum 1.110 -0.030 -13.051 13.098 Atomic orbital electron populations 1.21789 0.93014 1.02873 1.01588 1.20661 0.96835 0.95339 0.86755 0.92897 1.60672 1.34086 1.32215 1.02890 1.21651 1.01627 0.90509 0.88331 1.18820 0.85468 0.96345 0.93566 1.20358 1.11531 0.92571 1.27218 0.92352 1.24921 0.97223 0.94796 0.96255 1.69944 1.35966 1.07359 1.38950 0.86701 0.81800 0.80024 0.79717 1.20428 1.21435 1.20089 1.22759 1.07393 0.93410 0.97814 1.22839 1.04290 0.98075 0.99690 1.20737 0.92034 0.94285 0.95560 1.21290 0.98695 0.94202 0.97307 1.21135 0.93586 1.01837 0.90848 1.21132 1.11031 0.93240 0.88288 1.43676 0.98123 1.01113 1.02121 1.94521 1.46070 1.67259 1.30504 1.94535 1.60452 0.96091 1.86959 1.20987 0.96134 0.91309 0.99126 1.21162 0.99114 1.01063 0.92229 0.91691 0.93200 0.91130 0.84914 0.98267 0.89136 0.93011 0.92113 0.90168 0.90443 0.92165 0.82266 0.82990 0.83195 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.37 37.16 0.35 -1.41 16 2 C 0.11 1.50 2.82 -68.86 -0.19 1.30 16 3 H 0.05 0.69 7.51 -51.93 -0.39 0.30 16 4 N -0.67 -11.04 5.89 -107.95 -0.64 -11.67 16 5 C 0.11 2.17 5.39 -3.82 -0.02 2.15 16 6 C 0.06 1.34 1.50 -155.66 -0.23 1.10 16 7 C -0.48 -12.33 8.83 -34.44 -0.30 -12.64 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.07 1.83 5.25 -17.82 -0.09 1.74 16 10 N -0.88 -23.75 12.55 55.43 0.70 -23.05 16 11 Si 0.89 20.39 29.55 -169.99 -5.02 15.37 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 C -0.18 -3.87 9.88 -26.74 -0.26 -4.13 16 16 C -0.21 -4.27 9.39 -26.74 -0.25 -4.52 16 17 C -0.03 -0.28 4.66 -104.62 -0.49 -0.77 16 18 C -0.10 -1.05 9.01 -39.58 -0.36 -1.40 16 19 C -0.05 -0.59 9.56 -39.58 -0.38 -0.97 16 20 C -0.05 -0.63 6.85 -79.95 -0.55 -1.17 16 21 N 0.03 0.43 4.45 33.96 0.15 0.58 16 22 O -0.17 -2.35 18.45 -29.46 -0.54 -2.90 16 23 O -0.16 -2.33 18.45 -29.46 -0.54 -2.88 16 24 C -0.06 -0.56 9.56 -39.58 -0.38 -0.94 16 25 C -0.12 -1.11 9.67 -39.58 -0.38 -1.50 16 26 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.06 7.65 -51.93 -0.40 0.66 16 29 H 0.33 5.28 7.16 -39.29 -0.28 5.00 16 30 H 0.00 -0.01 7.72 -51.93 -0.40 -0.42 16 31 H 0.09 2.11 6.75 -51.93 -0.35 1.76 16 32 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 33 H 0.06 1.26 8.06 -51.93 -0.42 0.85 16 34 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.06 1.08 7.81 -51.93 -0.41 0.68 16 37 H 0.16 1.75 7.89 -52.49 -0.41 1.33 16 38 H 0.15 1.44 7.61 -52.49 -0.40 1.04 16 39 H 0.15 1.26 7.61 -52.48 -0.40 0.86 16 40 H 0.15 1.08 8.00 -52.49 -0.42 0.66 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -27.41 344.81 -9.76 -37.17 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.51 Total: 5.34 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -3.54 Total: -23.15 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.21 Total: -34.15 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -1.09 Total: -5.77 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.41 -9.76 -37.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429800449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.211 kcal (2) G-P(sol) polarization free energy of solvation -27.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds