Wall clock time and date at job start Tue Mar 31 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46875 * 2 1 4 4 N 1.46893 * 109.47330 * 120.00666 * 2 1 3 5 5 C 1.46904 * 110.99924 * 273.29675 * 4 2 1 6 6 C 1.52994 * 109.47369 * 184.33581 * 5 4 2 7 7 C 1.50703 * 115.54865 * 276.40717 * 6 5 4 8 8 H 1.07996 * 120.00364 * 114.44350 * 7 6 5 9 9 C 1.37879 * 119.99754 * 294.44730 * 7 6 5 10 10 N 1.31508 * 120.00077 * 353.30311 * 9 7 6 11 11 Si 1.86805 * 119.99986 * 173.30479 * 9 7 6 12 12 H 1.48498 * 109.47180 * 59.99555 * 11 9 7 13 13 H 1.48496 * 109.46995 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46827 * 299.99770 * 11 9 7 15 15 C 1.52998 * 117.50219 * 130.69703 * 6 5 4 16 16 C 1.52994 * 60.00007 * 252.50827 * 15 6 5 17 17 C 1.50702 * 109.46748 * 240.00616 * 2 1 3 18 18 C 1.38240 * 119.99813 * 285.44879 * 17 2 1 19 19 C 1.38237 * 119.99780 * 179.79062 * 18 17 2 20 20 C 1.38241 * 120.00154 * 0.46363 * 19 18 17 21 21 N 1.48010 * 120.00188 * 179.79130 * 20 19 18 22 22 O 1.21805 * 120.00259 * 179.97438 * 21 20 19 23 23 O 1.21808 * 120.00129 * 359.97438 * 21 20 19 24 24 C 1.38235 * 119.99454 * 359.77105 * 20 19 18 25 25 C 1.38233 * 120.00553 * 0.02562 * 24 20 19 26 26 H 1.08998 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47048 * 59.99696 * 1 2 3 28 28 H 1.08996 * 109.46509 * 299.99478 * 1 2 3 29 29 H 1.00896 * 111.00374 * 149.34551 * 4 2 1 30 30 H 1.09004 * 109.47084 * 304.33419 * 5 4 2 31 31 H 1.08996 * 109.46931 * 64.32844 * 5 4 2 32 32 H 0.97001 * 120.00227 * 185.01506 * 10 9 7 33 33 H 1.09002 * 117.49790 * 0.02562 * 15 6 5 34 34 H 1.09001 * 117.49854 * 145.01894 * 15 6 5 35 35 H 1.09004 * 117.50005 * 252.50999 * 16 15 6 36 36 H 1.08999 * 117.51718 * 107.47738 * 16 15 6 37 37 H 1.07989 * 119.99897 * 0.02562 * 18 17 2 38 38 H 1.07994 * 120.00283 * 180.25790 * 19 18 17 39 39 H 1.08005 * 119.99563 * 179.97438 * 24 20 19 40 40 H 1.07999 * 119.99797 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.1209 0.2317 2.3366 6 6 2.7342 -0.4975 3.5335 7 6 1.7708 -1.3018 4.3680 8 1 1.8608 -2.3771 4.4107 9 6 0.7745 -0.6646 5.0768 10 7 0.7437 0.6489 5.1318 11 14 -0.5316 -1.6673 5.9590 12 1 0.1157 -2.5490 6.9634 13 1 -1.4811 -0.7520 6.6416 14 1 -1.2681 -2.4979 4.9726 15 6 3.8966 0.1853 4.2570 16 6 4.1565 -1.0393 3.3777 17 6 2.0323 -0.7103 -1.2306 18 6 1.9620 -2.0886 -1.3101 19 6 2.4187 -2.7398 -2.4407 20 6 2.9546 -2.0135 -3.4878 21 7 3.4478 -2.7111 -4.6964 22 8 3.9196 -2.0711 -5.6192 23 8 3.3820 -3.9253 -4.7683 24 6 3.0293 -0.6356 -3.4061 25 6 2.5687 0.0160 -2.2773 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 0.5137 0.8900 29 1 2.9043 -1.1439 1.0204 30 1 2.7530 1.0766 2.0631 31 1 1.1269 0.5924 2.6011 32 1 0.0874 1.0958 5.6889 33 1 4.2241 1.1544 3.8805 34 1 3.9646 0.0532 5.3369 35 1 4.3955 -1.9773 3.8790 36 1 4.6551 -0.8766 2.4222 37 1 1.5468 -2.6562 -0.4907 38 1 2.3600 -3.8163 -2.5047 39 1 3.4483 -0.0682 -4.2240 40 1 2.6276 1.0925 -2.2135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429800449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:49 Heat of formation + Delta-G solvation = 30.034421 kcal Electronic energy + Delta-G solvation = -22531.615734 eV Core-core repulsion = 19121.647731 eV Total energy + Delta-G solvation = -3409.968003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.26049 -40.85906 -38.91362 -37.69236 -36.81611 -34.00887 -32.94779 -32.37823 -30.60134 -27.82967 -27.50653 -26.03259 -24.33150 -23.64134 -22.92640 -21.49639 -20.88288 -20.37614 -19.74832 -18.62144 -18.37181 -17.19695 -16.82567 -16.52744 -16.00815 -15.68327 -15.32225 -15.18808 -14.87791 -14.74750 -14.37402 -13.91397 -13.58404 -13.25161 -13.01101 -12.82002 -12.77811 -12.75567 -12.66571 -12.46408 -12.33668 -12.31884 -12.26406 -12.03883 -11.88626 -11.23813 -10.84518 -10.45833 -10.40223 -10.36121 -9.96838 -9.17408 -8.04702 -6.11685 -1.26038 -0.00004 0.27104 0.36927 1.44377 1.46673 1.52502 2.26876 2.47066 3.10766 3.22757 3.42216 3.45162 3.53193 3.65597 3.92865 4.00267 4.27465 4.31931 4.35274 4.45557 4.57234 4.69890 4.70298 4.70791 4.80830 4.83088 4.84878 4.96788 5.01821 5.11349 5.16561 5.24576 5.30429 5.38721 5.49579 5.60173 5.72072 5.96114 6.28679 6.45476 6.47384 6.66533 6.90309 7.53274 9.02567 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.003415 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.328181 B = 8197.499609 C = 8344.040516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.117 3.883 3 H 0.062 0.938 4 N -0.673 5.673 5 C 0.125 3.875 6 C 0.033 3.967 7 C -0.492 4.492 8 H 0.047 0.953 9 C 0.030 3.970 10 N -0.908 5.908 11 Si 0.941 3.059 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.273 1.273 15 C -0.185 4.185 16 C -0.184 4.184 17 C -0.026 4.026 18 C -0.097 4.097 19 C -0.053 4.053 20 C -0.065 4.065 21 N 0.032 4.968 22 O -0.175 6.175 23 O -0.188 6.188 24 C -0.050 4.050 25 C -0.104 4.104 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.339 0.661 30 H 0.005 0.995 31 H 0.056 0.944 32 H 0.258 0.742 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.169 0.831 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 0.054 -15.137 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.080 0.920 4 N -0.305 5.305 5 C -0.004 4.004 6 C 0.032 3.968 7 C -0.530 4.530 8 H 0.065 0.935 9 C -0.170 4.170 10 N -0.546 5.546 11 Si 0.768 3.232 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.223 4.223 16 C -0.222 4.222 17 C -0.027 4.027 18 C -0.116 4.116 19 C -0.072 4.072 20 C -0.148 4.148 21 N 0.547 4.453 22 O -0.390 6.390 23 O -0.400 6.400 24 C -0.069 4.069 25 C -0.123 4.123 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.158 0.842 30 H 0.023 0.977 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.174 0.826 38 H 0.178 0.822 39 H 0.186 0.814 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.143 0.286 -14.355 14.403 hybrid contribution 0.232 -0.133 0.395 0.477 sum 1.375 0.153 -13.960 14.028 Atomic orbital electron populations 1.21761 0.93178 1.02529 1.01554 1.20625 0.96665 0.95710 0.86207 0.92041 1.60504 1.34511 1.32006 1.03441 1.21218 0.99404 0.90900 0.88891 1.18925 0.86076 0.97294 0.94484 1.20626 1.12388 0.92393 1.27626 0.93483 1.25492 0.98786 0.95580 0.97140 1.70036 1.36560 1.08359 1.39675 0.85882 0.79759 0.78793 0.78745 1.20316 1.21346 1.19833 1.22700 1.07834 0.94903 0.96901 1.22830 1.02179 0.96905 1.00240 1.20560 0.92740 0.94236 0.95194 1.21240 0.98838 0.94272 0.97238 1.21195 0.93228 1.02334 0.90489 1.21325 1.11818 0.93965 0.87685 1.43941 0.97812 1.01045 1.02536 1.94502 1.46201 1.67121 1.31163 1.94532 1.61362 0.96669 1.87388 1.21229 0.95381 0.90607 0.99681 1.21376 0.97603 1.02255 0.91094 0.92212 0.90588 0.93758 0.84245 0.97694 0.92521 0.93286 0.90967 0.92370 0.90706 0.89233 0.82637 0.82245 0.81395 0.81053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.37 71.98 0.67 -2.61 16 2 C 0.12 2.84 2.82 44.17 0.12 2.96 16 3 H 0.06 1.43 7.51 -2.38 -0.02 1.41 16 4 N -0.67 -21.33 5.89 -495.45 -2.92 -24.25 16 5 C 0.12 5.00 5.39 86.30 0.47 5.47 16 6 C 0.03 1.48 1.50 -52.93 -0.08 1.40 16 7 C -0.49 -25.52 8.83 25.60 0.23 -25.29 16 8 H 0.05 2.48 7.82 -2.91 -0.02 2.45 16 9 C 0.03 1.57 5.25 84.66 0.44 2.01 16 10 N -0.91 -49.41 12.55 21.45 0.27 -49.14 16 11 Si 0.94 42.15 29.55 68.60 2.03 44.18 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 13 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 C -0.18 -8.06 9.88 30.59 0.30 -7.76 16 16 C -0.18 -7.12 9.39 30.59 0.29 -6.83 16 17 C -0.03 -0.51 4.66 -19.86 -0.09 -0.60 16 18 C -0.10 -1.92 9.01 22.27 0.20 -1.71 16 19 C -0.05 -1.04 9.56 22.27 0.21 -0.83 16 20 C -0.06 -1.36 6.85 36.38 0.25 -1.11 16 21 N 0.03 0.83 4.45 -46.47 -0.21 0.62 16 22 O -0.17 -4.60 18.45 18.88 0.35 -4.25 16 23 O -0.19 -5.21 18.45 18.88 0.35 -4.86 16 24 C -0.05 -0.83 9.56 22.27 0.21 -0.62 16 25 C -0.10 -1.60 9.67 22.27 0.22 -1.39 16 26 H 0.06 1.52 8.09 -2.39 -0.02 1.51 16 27 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.04 1.33 7.65 -2.39 -0.02 1.31 16 29 H 0.34 10.02 7.16 -89.70 -0.64 9.38 16 30 H 0.01 0.19 7.72 -2.39 -0.02 0.18 16 31 H 0.06 2.67 6.75 -2.39 -0.02 2.65 16 32 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 33 H 0.07 2.93 8.06 -2.39 -0.02 2.91 16 34 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 36 H 0.09 2.93 7.81 -2.39 -0.02 2.91 16 37 H 0.16 3.20 7.89 -2.92 -0.02 3.18 16 38 H 0.16 2.82 7.61 -2.91 -0.02 2.79 16 39 H 0.17 2.21 7.61 -2.91 -0.02 2.19 16 40 H 0.17 1.75 8.00 -2.91 -0.02 1.72 16 Total: -1.00 -58.78 344.81 3.72 -55.06 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.41 Total: 19.58 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 3.44 Total: -36.93 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -2.86 Total: -72.77 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.70 Total: -9.11 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -58.78 3.72 -55.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429800449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.092 kcal (2) G-P(sol) polarization free energy of solvation -58.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds