Wall clock time and date at job start Tue Mar 31 2020 06:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46972 * 2 1 4 4 N 1.46894 * 109.47275 * 239.99734 * 2 1 3 5 5 C 1.46904 * 110.99901 * 85.54913 * 4 2 1 6 6 C 1.53001 * 109.46958 * 184.03601 * 5 4 2 7 7 C 1.50697 * 115.54994 * 272.33643 * 6 5 4 8 8 H 1.08007 * 119.99819 * 114.85487 * 7 6 5 9 9 C 1.37881 * 120.00249 * 294.85630 * 7 6 5 10 10 N 1.31509 * 119.99860 * 356.17516 * 9 7 6 11 11 Si 1.86797 * 120.00004 * 176.17709 * 9 7 6 12 12 H 1.48495 * 109.47444 * 90.00087 * 11 9 7 13 13 H 1.48508 * 109.47079 * 210.00166 * 11 9 7 14 14 H 1.48498 * 109.47191 * 329.99683 * 11 9 7 15 15 C 1.52999 * 117.49936 * 126.63008 * 6 5 4 16 16 C 1.52996 * 60.00240 * 252.50819 * 15 6 5 17 17 C 1.50700 * 109.47170 * 119.99656 * 2 1 3 18 18 C 1.38234 * 119.99760 * 73.79372 * 17 2 1 19 19 C 1.38245 * 119.99915 * 179.78744 * 18 17 2 20 20 C 1.38230 * 119.99796 * 0.46819 * 19 18 17 21 21 N 1.48022 * 120.00095 * 179.79084 * 20 19 18 22 22 O 1.21796 * 119.99945 * 179.97438 * 21 20 19 23 23 O 1.21798 * 119.99601 * 359.97438 * 21 20 19 24 24 C 1.38241 * 119.99927 * 359.76652 * 20 19 18 25 25 C 1.38228 * 120.00188 * 254.07418 * 17 2 1 26 26 H 1.09000 * 109.46824 * 60.00164 * 1 2 3 27 27 H 1.08999 * 109.46646 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46645 * 300.00134 * 1 2 3 29 29 H 1.00896 * 111.00293 * 209.50724 * 4 2 1 30 30 H 1.08994 * 109.46882 * 64.03759 * 5 4 2 31 31 H 1.08995 * 109.46965 * 304.03526 * 5 4 2 32 32 H 0.96996 * 120.00122 * 185.03415 * 10 9 7 33 33 H 1.08999 * 117.50076 * 0.02562 * 15 6 5 34 34 H 1.09001 * 117.49844 * 145.01607 * 15 6 5 35 35 H 1.09001 * 117.49979 * 252.51222 * 16 15 6 36 36 H 1.09004 * 117.51779 * 107.47703 * 16 15 6 37 37 H 1.08001 * 120.00375 * 0.02562 * 18 17 2 38 38 H 1.07996 * 119.99755 * 180.26385 * 19 18 17 39 39 H 1.08002 * 119.99887 * 180.02562 * 24 20 19 40 40 H 1.07999 * 120.00231 * 359.97438 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1993 5 6 2.0949 0.2257 -2.3436 6 6 2.5111 -0.5511 -3.5943 7 6 3.9963 -0.6828 -3.8134 8 1 4.4640 -1.6554 -3.7725 9 6 4.7579 0.4384 -4.0662 10 7 4.1787 1.6125 -4.1907 11 14 6.6126 0.2897 -4.2317 12 1 6.9640 0.0353 -5.6519 13 1 7.2525 1.5521 -3.7819 14 1 7.0958 -0.8363 -3.3928 15 6 1.6223 -0.4241 -4.8332 16 6 1.6269 -1.7232 -4.0249 17 6 2.0324 -0.7103 1.2305 18 6 1.9478 -2.0874 1.3165 19 6 2.4126 -2.7394 2.4435 20 6 2.9532 -2.0135 3.4883 21 7 3.4467 -2.7112 4.6969 22 8 3.9234 -2.0717 5.6173 23 8 3.3760 -3.9249 4.7709 24 6 3.0333 -0.6360 3.4042 25 6 2.5725 0.0156 2.2755 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 2.9132 -1.1281 -1.0260 30 1 2.8301 1.0035 -2.1376 31 1 1.1190 0.6824 -2.5076 32 1 4.7042 2.3886 -4.4404 33 1 0.7413 0.2132 -4.7574 34 1 2.1118 -0.4356 -5.8071 35 1 2.1193 -2.5893 -4.4670 36 1 0.7488 -1.9411 -3.4169 37 1 1.5220 -2.6543 0.5018 38 1 2.3504 -3.8156 2.5088 39 1 3.4561 -0.0689 4.2204 40 1 2.6349 1.0918 2.2101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429800561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:52 Heat of formation + Delta-G solvation = 40.859641 kcal Electronic energy + Delta-G solvation = -22565.094089 eV Core-core repulsion = 19155.595503 eV Total energy + Delta-G solvation = -3409.498586 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.23638 -39.90255 -37.27339 -36.63168 -35.50252 -32.10719 -31.83513 -31.50206 -29.50051 -26.61039 -25.80379 -24.54876 -23.43328 -22.57492 -21.14412 -20.38982 -19.43151 -19.16063 -18.70666 -17.59186 -16.62994 -15.95504 -15.69986 -15.03105 -14.75751 -14.44958 -14.06988 -14.00734 -13.85681 -13.47243 -12.87739 -12.73433 -12.11450 -11.94905 -11.75898 -11.65403 -11.55926 -11.40246 -11.21996 -11.20731 -11.06433 -10.96057 -10.77517 -10.52018 -10.20573 -9.61303 -9.52474 -9.35267 -8.89275 -8.59079 -8.20256 -7.79322 -6.13600 -4.19407 -0.25161 0.83165 1.26798 1.34338 3.15299 3.20403 3.28393 3.31272 4.20006 4.30721 4.33880 4.35775 4.54929 4.84402 4.89607 5.11953 5.12289 5.33940 5.37994 5.50317 5.52150 5.64016 5.64517 5.82332 5.96586 6.06663 6.12650 6.15251 6.29374 6.40868 6.41265 6.49002 6.76216 6.80292 6.82033 7.06637 7.41196 7.45782 7.57016 7.71138 7.78757 7.97730 8.38644 8.82930 9.45773 10.93893 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016444 B = 0.003960 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.293589 B = 7068.291537 C = 7861.196118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.112 3.888 3 H 0.056 0.944 4 N -0.676 5.676 5 C 0.106 3.894 6 C 0.052 3.948 7 C -0.495 4.495 8 H 0.059 0.941 9 C 0.071 3.929 10 N -0.880 5.880 11 Si 0.886 3.114 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.273 1.273 15 C -0.178 4.178 16 C -0.192 4.192 17 C -0.023 4.023 18 C -0.096 4.096 19 C -0.056 4.056 20 C -0.054 4.054 21 N 0.032 4.968 22 O -0.169 6.169 23 O -0.166 6.166 24 C -0.056 4.056 25 C -0.115 4.115 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.345 0.655 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.260 0.740 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -2.462 11.809 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.002 3.998 3 H 0.074 0.926 4 N -0.308 5.308 5 C -0.022 4.022 6 C 0.051 3.949 7 C -0.533 4.533 8 H 0.077 0.923 9 C -0.132 4.132 10 N -0.517 5.517 11 Si 0.714 3.286 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.217 4.217 16 C -0.229 4.229 17 C -0.024 4.024 18 C -0.115 4.115 19 C -0.075 4.075 20 C -0.137 4.137 21 N 0.550 4.450 22 O -0.384 6.384 23 O -0.381 6.381 24 C -0.075 4.075 25 C -0.134 4.134 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.164 0.836 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.175 0.825 38 H 0.169 0.831 39 H 0.168 0.832 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.991 -2.138 11.087 13.280 hybrid contribution 1.994 0.445 0.287 2.063 sum -4.997 -1.693 11.374 12.538 Atomic orbital electron populations 1.21789 0.93433 1.02522 1.01429 1.20622 0.96270 0.95830 0.87109 0.92645 1.60772 1.34289 1.32993 1.02754 1.21528 0.98238 0.93298 0.89156 1.18743 0.91680 0.94436 0.90024 1.20569 0.90319 0.93060 1.49349 0.92315 1.24974 0.98163 0.95272 0.94833 1.69956 1.35776 0.99344 1.46644 0.86682 0.85862 0.77520 0.78554 1.20572 1.21230 1.19828 1.22737 1.01692 0.99252 0.97977 1.22720 1.02657 0.92365 1.05148 1.20683 0.92103 0.94237 0.95385 1.21229 0.98918 0.94147 0.97177 1.21113 0.93666 1.01752 0.90939 1.21127 1.10982 0.93247 0.88325 1.43671 0.98104 1.01091 1.02129 1.94520 1.45836 1.67264 1.30743 1.94527 1.60545 0.96164 1.86876 1.20993 0.96033 0.91313 0.99159 1.21175 0.98928 1.01148 0.92157 0.91689 0.91860 0.93037 0.83648 0.93246 0.93888 0.92983 0.92104 0.90633 0.91174 0.90984 0.82489 0.83052 0.83199 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.34 37.16 0.35 -1.20 16 2 C 0.11 1.45 2.81 -68.86 -0.19 1.25 16 3 H 0.06 0.76 7.64 -51.93 -0.40 0.36 16 4 N -0.68 -10.97 5.69 -107.95 -0.61 -11.58 16 5 C 0.11 2.14 5.28 -3.82 -0.02 2.12 16 6 C 0.05 1.18 1.53 -155.66 -0.24 0.94 16 7 C -0.50 -12.63 8.82 -34.44 -0.30 -12.94 16 8 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 9 C 0.07 1.83 5.26 -17.82 -0.09 1.73 16 10 N -0.88 -23.57 12.43 55.43 0.69 -22.88 16 11 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 C -0.18 -3.96 9.88 -26.73 -0.26 -4.22 16 16 C -0.19 -3.93 9.79 -26.73 -0.26 -4.19 16 17 C -0.02 -0.26 4.66 -104.63 -0.49 -0.75 16 18 C -0.10 -1.04 9.02 -39.58 -0.36 -1.40 16 19 C -0.06 -0.61 9.56 -39.58 -0.38 -0.99 16 20 C -0.05 -0.65 6.85 -79.95 -0.55 -1.20 16 21 N 0.03 0.45 4.45 33.96 0.15 0.60 16 22 O -0.17 -2.44 18.45 -29.46 -0.54 -2.99 16 23 O -0.17 -2.41 18.45 -29.46 -0.54 -2.95 16 24 C -0.06 -0.59 9.56 -39.58 -0.38 -0.97 16 25 C -0.11 -1.18 9.67 -39.59 -0.38 -1.56 16 26 H 0.06 0.82 7.43 -51.93 -0.39 0.43 16 27 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.34 5.93 8.18 -39.29 -0.32 5.61 16 30 H 0.05 1.14 7.13 -51.93 -0.37 0.77 16 31 H 0.04 0.85 7.14 -51.93 -0.37 0.48 16 32 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 33 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 34 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.16 1.63 7.91 -52.49 -0.42 1.22 16 38 H 0.15 1.45 7.61 -52.49 -0.40 1.05 16 39 H 0.15 1.37 7.61 -52.49 -0.40 0.97 16 40 H 0.15 1.22 8.00 -52.49 -0.42 0.80 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -27.20 345.82 -9.78 -36.98 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.55 Total: 5.78 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -3.56 Total: -23.37 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.23 Total: -33.87 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -1.09 Total: -5.94 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.20 -9.78 -36.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429800561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.838 kcal (2) G-P(sol) polarization free energy of solvation -27.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds