Wall clock time and date at job start Tue Mar 31 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46972 * 2 1 4 4 N 1.46894 * 109.47275 * 239.99734 * 2 1 3 5 5 C 1.46904 * 110.99901 * 85.54913 * 4 2 1 6 6 C 1.53001 * 109.46958 * 184.03601 * 5 4 2 7 7 C 1.50697 * 115.54994 * 272.33643 * 6 5 4 8 8 H 1.08007 * 119.99819 * 114.85487 * 7 6 5 9 9 C 1.37881 * 120.00249 * 294.85630 * 7 6 5 10 10 N 1.31509 * 119.99860 * 356.17516 * 9 7 6 11 11 Si 1.86797 * 120.00004 * 176.17709 * 9 7 6 12 12 H 1.48495 * 109.47444 * 90.00087 * 11 9 7 13 13 H 1.48508 * 109.47079 * 210.00166 * 11 9 7 14 14 H 1.48498 * 109.47191 * 329.99683 * 11 9 7 15 15 C 1.52999 * 117.49936 * 126.63008 * 6 5 4 16 16 C 1.52996 * 60.00240 * 252.50819 * 15 6 5 17 17 C 1.50700 * 109.47170 * 119.99656 * 2 1 3 18 18 C 1.38234 * 119.99760 * 73.79372 * 17 2 1 19 19 C 1.38245 * 119.99915 * 179.78744 * 18 17 2 20 20 C 1.38230 * 119.99796 * 0.46819 * 19 18 17 21 21 N 1.48022 * 120.00095 * 179.79084 * 20 19 18 22 22 O 1.21796 * 119.99945 * 179.97438 * 21 20 19 23 23 O 1.21798 * 119.99601 * 359.97438 * 21 20 19 24 24 C 1.38241 * 119.99927 * 359.76652 * 20 19 18 25 25 C 1.38228 * 120.00188 * 254.07418 * 17 2 1 26 26 H 1.09000 * 109.46824 * 60.00164 * 1 2 3 27 27 H 1.08999 * 109.46646 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46645 * 300.00134 * 1 2 3 29 29 H 1.00896 * 111.00293 * 209.50724 * 4 2 1 30 30 H 1.08994 * 109.46882 * 64.03759 * 5 4 2 31 31 H 1.08995 * 109.46965 * 304.03526 * 5 4 2 32 32 H 0.96996 * 120.00122 * 185.03415 * 10 9 7 33 33 H 1.08999 * 117.50076 * 0.02562 * 15 6 5 34 34 H 1.09001 * 117.49844 * 145.01607 * 15 6 5 35 35 H 1.09001 * 117.49979 * 252.51222 * 16 15 6 36 36 H 1.09004 * 117.51779 * 107.47703 * 16 15 6 37 37 H 1.08001 * 120.00375 * 0.02562 * 18 17 2 38 38 H 1.07996 * 119.99755 * 180.26385 * 19 18 17 39 39 H 1.08002 * 119.99887 * 180.02562 * 24 20 19 40 40 H 1.07999 * 120.00231 * 359.97438 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1993 5 6 2.0949 0.2257 -2.3436 6 6 2.5111 -0.5511 -3.5943 7 6 3.9963 -0.6828 -3.8134 8 1 4.4640 -1.6554 -3.7725 9 6 4.7579 0.4384 -4.0662 10 7 4.1787 1.6125 -4.1907 11 14 6.6126 0.2897 -4.2317 12 1 6.9640 0.0353 -5.6519 13 1 7.2525 1.5521 -3.7819 14 1 7.0958 -0.8363 -3.3928 15 6 1.6223 -0.4241 -4.8332 16 6 1.6269 -1.7232 -4.0249 17 6 2.0324 -0.7103 1.2305 18 6 1.9478 -2.0874 1.3165 19 6 2.4126 -2.7394 2.4435 20 6 2.9532 -2.0135 3.4883 21 7 3.4467 -2.7112 4.6969 22 8 3.9234 -2.0717 5.6173 23 8 3.3760 -3.9249 4.7709 24 6 3.0333 -0.6360 3.4042 25 6 2.5725 0.0156 2.2755 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 2.9132 -1.1281 -1.0260 30 1 2.8301 1.0035 -2.1376 31 1 1.1190 0.6824 -2.5076 32 1 4.7042 2.3886 -4.4404 33 1 0.7413 0.2132 -4.7574 34 1 2.1118 -0.4356 -5.8071 35 1 2.1193 -2.5893 -4.4670 36 1 0.7488 -1.9411 -3.4169 37 1 1.5220 -2.6543 0.5018 38 1 2.3504 -3.8156 2.5088 39 1 3.4561 -0.0689 4.2204 40 1 2.6349 1.0918 2.2101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429800561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:51 Heat of formation + Delta-G solvation = 28.251770 kcal Electronic energy + Delta-G solvation = -22565.640807 eV Core-core repulsion = 19155.595503 eV Total energy + Delta-G solvation = -3410.045304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.26798 -40.83583 -38.80648 -37.70128 -36.80255 -34.05162 -32.94659 -32.37485 -30.59264 -27.73960 -27.56146 -26.02107 -24.31793 -23.61910 -22.82262 -21.46858 -20.92778 -20.37990 -19.75985 -18.63029 -18.16807 -17.27390 -16.79357 -16.64131 -15.91262 -15.73738 -15.37430 -15.22073 -14.87800 -14.62478 -14.26358 -13.88828 -13.46405 -13.35873 -13.03584 -12.90241 -12.78069 -12.75500 -12.70784 -12.46061 -12.35773 -12.32639 -12.22012 -11.96598 -11.86955 -11.23729 -10.75706 -10.46831 -10.37946 -10.35293 -9.94576 -9.20437 -8.10550 -6.20604 -1.25626 0.00486 0.27590 0.36789 1.38073 1.42218 1.49148 2.27738 2.40946 3.12271 3.18177 3.42948 3.46216 3.53520 3.75710 3.95045 4.01719 4.31376 4.34058 4.36212 4.47174 4.69377 4.70269 4.71534 4.79916 4.80925 4.87226 5.01140 5.06895 5.10683 5.12849 5.16483 5.30153 5.32286 5.40275 5.50095 5.66278 5.69979 5.88461 6.27875 6.46147 6.47365 6.56025 6.88981 7.46568 8.95937 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016444 B = 0.003960 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.293589 B = 7068.291537 C = 7861.196118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.113 3.887 3 H 0.051 0.949 4 N -0.668 5.668 5 C 0.125 3.875 6 C 0.029 3.971 7 C -0.506 4.506 8 H 0.049 0.951 9 C 0.031 3.969 10 N -0.905 5.905 11 Si 0.939 3.061 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.270 1.270 15 C -0.188 4.188 16 C -0.165 4.165 17 C -0.027 4.027 18 C -0.094 4.094 19 C -0.054 4.054 20 C -0.066 4.066 21 N 0.033 4.967 22 O -0.181 6.181 23 O -0.183 6.183 24 C -0.053 4.053 25 C -0.110 4.110 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.339 0.661 30 H 0.015 0.985 31 H 0.046 0.954 32 H 0.259 0.741 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.696 -2.663 12.589 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.004 3.996 3 H 0.069 0.931 4 N -0.299 5.299 5 C -0.004 4.004 6 C 0.028 3.972 7 C -0.544 4.544 8 H 0.068 0.932 9 C -0.170 4.170 10 N -0.543 5.543 11 Si 0.766 3.234 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.195 1.195 15 C -0.226 4.226 16 C -0.202 4.202 17 C -0.027 4.027 18 C -0.112 4.112 19 C -0.073 4.073 20 C -0.150 4.150 21 N 0.547 4.453 22 O -0.394 6.394 23 O -0.396 6.396 24 C -0.072 4.072 25 C -0.129 4.129 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.157 0.843 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.181 0.819 38 H 0.180 0.820 39 H 0.183 0.817 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.497 -2.367 11.886 14.251 hybrid contribution 2.117 0.511 0.023 2.178 sum -5.380 -1.856 11.909 13.199 Atomic orbital electron populations 1.21760 0.92048 1.02997 1.01922 1.20644 0.97236 0.95389 0.86356 0.93124 1.60717 1.33762 1.32239 1.03192 1.21137 0.97048 0.92582 0.89658 1.18875 0.90725 0.96405 0.91176 1.20825 0.92095 0.92605 1.48901 0.93237 1.25541 1.01432 0.95122 0.94889 1.70050 1.36839 0.99730 1.47645 0.85845 0.81916 0.77364 0.78274 1.20637 1.21183 1.19477 1.22695 1.01958 1.01013 0.96967 1.22685 1.02443 0.91284 1.03811 1.20593 0.92635 0.94461 0.95060 1.21268 0.98761 0.93996 0.97211 1.21242 0.93120 1.02392 0.90501 1.21331 1.11875 0.93885 0.87861 1.43930 0.97794 1.01031 1.02532 1.94505 1.46284 1.67170 1.31476 1.94516 1.61142 0.96684 1.87225 1.21195 0.95512 0.90814 0.99642 1.21366 0.97924 1.02143 0.91425 0.92824 0.91382 0.90940 0.84281 0.96622 0.93603 0.93191 0.91042 0.92718 0.91356 0.88823 0.81898 0.81955 0.81743 0.81663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.34 71.98 0.67 -2.00 16 2 C 0.11 2.72 2.81 44.17 0.12 2.84 16 3 H 0.05 1.30 7.64 -2.39 -0.02 1.28 16 4 N -0.67 -20.73 5.69 -495.45 -2.82 -23.55 16 5 C 0.12 4.98 5.28 86.30 0.46 5.43 16 6 C 0.03 1.30 1.53 -52.93 -0.08 1.22 16 7 C -0.51 -25.83 8.82 25.60 0.23 -25.60 16 8 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 9 C 0.03 1.58 5.26 84.66 0.44 2.03 16 10 N -0.90 -48.82 12.43 21.45 0.27 -48.55 16 11 Si 0.94 41.52 29.54 68.60 2.03 43.55 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 13 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 15 C -0.19 -8.27 9.88 30.59 0.30 -7.96 16 16 C -0.17 -6.52 9.79 30.59 0.30 -6.22 16 17 C -0.03 -0.54 4.66 -19.87 -0.09 -0.64 16 18 C -0.09 -1.83 9.02 22.27 0.20 -1.63 16 19 C -0.05 -1.07 9.56 22.27 0.21 -0.86 16 20 C -0.07 -1.49 6.85 36.37 0.25 -1.24 16 21 N 0.03 0.88 4.45 -46.46 -0.21 0.67 16 22 O -0.18 -5.07 18.45 18.89 0.35 -4.72 16 23 O -0.18 -5.19 18.45 18.89 0.35 -4.84 16 24 C -0.05 -1.00 9.56 22.27 0.21 -0.79 16 25 C -0.11 -1.97 9.67 22.27 0.22 -1.75 16 26 H 0.05 1.24 7.43 -2.39 -0.02 1.22 16 27 H 0.07 1.35 8.07 -2.39 -0.02 1.33 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.34 11.26 8.18 -89.70 -0.73 10.52 16 30 H 0.02 0.72 7.13 -2.39 -0.02 0.71 16 31 H 0.05 1.78 7.14 -2.39 -0.02 1.76 16 32 H 0.26 13.49 8.32 -92.71 -0.77 12.72 16 33 H 0.07 2.94 8.04 -2.39 -0.02 2.92 16 34 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 37 H 0.16 3.00 7.91 -2.91 -0.02 2.98 16 38 H 0.16 2.84 7.61 -2.91 -0.02 2.82 16 39 H 0.17 2.62 7.61 -2.91 -0.02 2.60 16 40 H 0.17 2.28 8.00 -2.91 -0.02 2.26 16 Total: -1.00 -57.41 345.82 3.72 -53.68 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.32 Total: 20.93 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 3.44 Total: -37.18 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -2.76 Total: -71.43 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.70 Total: -9.56 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -57.41 3.72 -53.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429800561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.935 kcal (2) G-P(sol) polarization free energy of solvation -57.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds