Wall clock time and date at job start Tue Mar 31 2020 06:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.46839 * 2 1 4 4 N 1.46898 * 109.47406 * 120.00018 * 2 1 3 5 5 C 1.46896 * 111.00172 * 272.78947 * 4 2 1 6 6 C 1.53004 * 109.47403 * 185.25018 * 5 4 2 7 7 C 1.50695 * 115.54927 * 80.87121 * 6 5 4 8 8 H 1.08003 * 120.00081 * 269.19891 * 7 6 5 9 9 C 1.37879 * 119.99952 * 89.20706 * 7 6 5 10 10 N 1.31515 * 120.00326 * 175.94587 * 9 7 6 11 11 Si 1.86799 * 119.99794 * 355.94157 * 9 7 6 12 12 H 1.48502 * 109.47093 * 89.78022 * 11 9 7 13 13 H 1.48505 * 109.47147 * 209.77770 * 11 9 7 14 14 H 1.48497 * 109.47338 * 329.78249 * 11 9 7 15 15 C 1.52997 * 117.49335 * 295.20716 * 6 5 4 16 16 C 1.53001 * 60.02997 * 252.49959 * 15 6 5 17 17 C 1.50697 * 109.47128 * 240.00295 * 2 1 3 18 18 C 1.38258 * 120.00000 * 285.38160 * 17 2 1 19 19 C 1.38213 * 120.00237 * 180.02562 * 18 17 2 20 20 C 1.38248 * 120.00094 * 359.95594 * 19 18 17 21 21 C 1.38215 * 119.99851 * 0.02562 * 20 19 18 22 22 N 1.48026 * 119.99899 * 180.02562 * 21 20 19 23 23 O 1.21801 * 120.00214 * 359.97438 * 22 21 20 24 24 O 1.21805 * 119.99724 * 179.97438 * 22 21 20 25 25 C 1.38214 * 120.00433 * 105.10319 * 17 2 1 26 26 H 1.08996 * 109.47600 * 59.99914 * 1 2 3 27 27 H 1.09008 * 109.47127 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47358 * 299.99773 * 1 2 3 29 29 H 1.00901 * 110.99878 * 36.73837 * 4 2 1 30 30 H 1.08992 * 109.47142 * 65.24520 * 5 4 2 31 31 H 1.09009 * 109.46845 * 305.24654 * 5 4 2 32 32 H 0.96996 * 120.00230 * 179.97438 * 10 9 7 33 33 H 1.09001 * 117.50377 * 359.97438 * 15 6 5 34 34 H 1.08999 * 117.50035 * 144.99740 * 15 6 5 35 35 H 1.08994 * 117.50289 * 107.50718 * 16 15 6 36 36 H 1.09005 * 117.49706 * 252.52313 * 16 15 6 37 37 H 1.07999 * 119.99951 * 359.97438 * 18 17 2 38 38 H 1.08000 * 120.00126 * 179.97438 * 19 18 17 39 39 H 1.08003 * 120.00532 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.99890 * 0.02562 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.1323 0.2345 2.3334 6 6 2.7664 -0.4894 3.5229 7 6 4.2683 -0.6067 3.4869 8 1 4.7319 -1.4686 3.0300 9 6 5.0507 0.3862 4.0373 10 7 6.3579 0.2471 4.0775 11 14 4.2541 1.9291 4.7259 12 1 3.9342 1.7226 6.1613 13 1 5.1900 3.0737 4.5871 14 1 3.0047 2.2176 3.9770 15 6 1.9821 -1.6462 4.1455 16 6 2.1031 -0.3159 4.8915 17 6 2.0323 -0.7103 -1.2305 18 6 1.9633 -2.0889 -1.3094 19 6 2.4245 -2.7405 -2.4377 20 6 2.9539 -2.0137 -3.4878 21 6 3.0226 -0.6355 -3.4091 22 7 3.5890 0.1428 -4.5336 23 8 3.9950 -0.4314 -5.5282 24 8 3.6491 1.3574 -4.4644 25 6 2.5567 0.0166 -2.2825 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.4285 -1.4767 1.4308 30 1 1.1404 0.5905 2.6115 31 1 2.7562 1.0820 2.0493 32 1 6.9083 0.9458 4.4644 33 1 1.0143 -1.8913 3.7080 34 1 2.5525 -2.4921 4.5291 35 1 1.2152 0.3139 4.9446 36 1 2.7535 -0.2865 5.7657 37 1 1.5498 -2.6568 -0.4891 38 1 2.3709 -3.8174 -2.4992 39 1 3.3140 -2.5227 -4.3697 40 1 2.6069 1.0938 -2.2226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430737505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:54 Heat of formation + Delta-G solvation = 48.499897 kcal Electronic energy + Delta-G solvation = -22712.693857 eV Core-core repulsion = 19303.526577 eV Total energy + Delta-G solvation = -3409.167280 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.17079 -39.85370 -37.70424 -36.56739 -35.79322 -32.10769 -31.95486 -31.62395 -29.20513 -26.61865 -26.16271 -24.77792 -23.37977 -22.74735 -21.72982 -20.92149 -19.08491 -18.71123 -18.53870 -17.52260 -16.80340 -16.46698 -15.69698 -15.39006 -14.88794 -14.44518 -14.31748 -14.05898 -13.75916 -13.30248 -12.87537 -12.71090 -12.52466 -12.47455 -12.28315 -11.78753 -11.57726 -11.52938 -11.20005 -11.14808 -11.12542 -11.06904 -10.75931 -10.46043 -10.13657 -9.67702 -9.62405 -9.26168 -9.08163 -8.60225 -8.54293 -7.99206 -6.08407 -4.09020 -0.16205 0.86241 1.35557 1.40483 3.21080 3.27055 3.37004 3.38695 4.08559 4.36320 4.41810 4.45077 4.67661 4.80203 4.84907 4.91276 4.99664 5.11075 5.18607 5.21091 5.37063 5.55608 5.61786 5.68508 5.75217 5.85376 5.91660 5.99488 6.06358 6.06695 6.11847 6.23104 6.30860 6.39744 6.46486 6.66767 7.01574 7.14588 7.43774 7.63736 7.66961 7.79744 8.54611 8.97685 9.54630 11.04069 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.004176 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.246955 B = 6703.922021 C = 7308.338461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.117 3.883 3 H 0.091 0.909 4 N -0.663 5.663 5 C 0.099 3.901 6 C 0.012 3.988 7 C -0.471 4.471 8 H 0.078 0.922 9 C 0.074 3.926 10 N -0.900 5.900 11 Si 0.880 3.120 12 H -0.280 1.280 13 H -0.295 1.295 14 H -0.263 1.263 15 C -0.180 4.180 16 C -0.205 4.205 17 C -0.052 4.052 18 C -0.043 4.043 19 C -0.118 4.118 20 C -0.064 4.064 21 C -0.045 4.045 22 N 0.032 4.968 23 O -0.168 6.168 24 O -0.164 6.164 25 C -0.052 4.052 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.336 0.664 30 H 0.007 0.993 31 H 0.073 0.927 32 H 0.263 0.737 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.320 -3.761 -10.972 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.006 3.994 3 H 0.109 0.891 4 N -0.293 5.293 5 C -0.029 4.029 6 C 0.010 3.990 7 C -0.509 4.509 8 H 0.096 0.904 9 C -0.128 4.128 10 N -0.538 5.538 11 Si 0.709 3.291 12 H -0.206 1.206 13 H -0.222 1.222 14 H -0.188 1.188 15 C -0.217 4.217 16 C -0.243 4.243 17 C -0.054 4.054 18 C -0.062 4.062 19 C -0.137 4.137 20 C -0.083 4.083 21 C -0.128 4.128 22 N 0.550 4.450 23 O -0.383 6.383 24 O -0.380 6.380 25 C -0.071 4.071 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.025 0.975 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.733 -3.974 -10.544 17.003 hybrid contribution -0.997 1.226 0.431 1.637 sum -13.730 -2.749 -10.114 17.273 Atomic orbital electron populations 1.22521 0.96121 1.02421 1.02611 1.20509 0.92504 0.97870 0.88518 0.89056 1.60340 1.54633 1.10683 1.03605 1.21869 0.96232 0.94693 0.90098 1.19387 0.95170 0.96380 0.88028 1.20195 0.85897 1.07382 1.37421 0.90385 1.24976 0.94563 0.97974 0.95278 1.69891 1.04161 1.34148 1.45573 0.86850 0.79379 0.83133 0.79780 1.20571 1.22216 1.18799 1.22733 1.00160 0.92669 1.06161 1.23035 1.02125 1.00613 0.98484 1.19899 0.97244 0.93780 0.94435 1.21446 0.93852 0.94075 0.96800 1.21192 0.98998 1.00821 0.92640 1.20999 0.96196 0.90747 1.00373 1.21036 1.09804 0.92180 0.89758 1.43663 0.98252 1.01324 1.01764 1.94510 1.49723 1.72578 1.21478 1.94542 1.60307 0.95979 1.87126 1.20905 0.93976 1.02003 0.90257 0.92060 0.92162 0.91766 0.84559 0.97471 0.90844 0.92668 0.91544 0.89538 0.91238 0.89354 0.84080 0.83696 0.83333 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.10 37.16 0.34 -1.39 16 2 C 0.12 1.44 2.80 -68.87 -0.19 1.25 16 3 H 0.09 1.20 7.49 -51.93 -0.39 0.81 16 4 N -0.66 -10.17 5.78 -107.96 -0.62 -10.80 16 5 C 0.10 1.84 4.78 -3.82 -0.02 1.82 16 6 C 0.01 0.25 1.02 -155.63 -0.16 0.09 16 7 C -0.47 -12.62 9.41 -34.44 -0.32 -12.95 16 8 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 11 Si 0.88 21.17 24.86 -169.99 -4.23 16.94 16 12 H -0.28 -6.62 7.10 56.52 0.40 -6.22 16 13 H -0.30 -7.24 7.11 56.52 0.40 -6.83 16 14 H -0.26 -5.91 6.18 56.52 0.35 -5.56 16 15 C -0.18 -3.34 9.58 -26.73 -0.26 -3.60 16 16 C -0.20 -4.10 7.58 -26.70 -0.20 -4.31 16 17 C -0.05 -0.62 4.95 -104.62 -0.52 -1.14 16 18 C -0.04 -0.45 9.24 -39.58 -0.37 -0.81 16 19 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 20 C -0.06 -0.68 9.56 -39.59 -0.38 -1.06 16 21 C -0.04 -0.58 6.85 -79.94 -0.55 -1.13 16 22 N 0.03 0.47 4.45 33.96 0.15 0.62 16 23 O -0.17 -2.53 18.45 -29.46 -0.54 -3.07 16 24 O -0.16 -2.58 18.45 -29.46 -0.54 -3.12 16 25 C -0.05 -0.65 9.18 -39.58 -0.36 -1.01 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.52 8.08 -51.92 -0.42 0.10 16 28 H 0.06 0.65 7.71 -51.93 -0.40 0.25 16 29 H 0.34 4.54 7.53 -39.29 -0.30 4.24 16 30 H 0.01 0.12 7.52 -51.93 -0.39 -0.27 16 31 H 0.07 1.51 7.18 -51.92 -0.37 1.13 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 34 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 36 H 0.09 1.91 7.20 -51.93 -0.37 1.54 16 37 H 0.14 1.25 7.51 -52.49 -0.39 0.86 16 38 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.15 1.34 7.61 -52.48 -0.40 0.94 16 40 H 0.15 1.78 7.55 -52.49 -0.40 1.39 16 LS Contribution 338.07 15.07 5.09 5.09 Total: -1.00 -30.73 338.07 -8.94 -39.68 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.55 Total: 4.73 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -3.48 Total: -23.75 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.30 Total: -36.49 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -1.09 Total: -6.19 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.23 Total: 16.94 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.73 -8.94 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430737505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.178 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds