Wall clock time and date at job start Tue Mar 31 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.46839 * 2 1 4 4 N 1.46898 * 109.47406 * 120.00018 * 2 1 3 5 5 C 1.46896 * 111.00172 * 272.78947 * 4 2 1 6 6 C 1.53004 * 109.47403 * 185.25018 * 5 4 2 7 7 C 1.50695 * 115.54927 * 80.87121 * 6 5 4 8 8 H 1.08003 * 120.00081 * 269.19891 * 7 6 5 9 9 C 1.37879 * 119.99952 * 89.20706 * 7 6 5 10 10 N 1.31515 * 120.00326 * 175.94587 * 9 7 6 11 11 Si 1.86799 * 119.99794 * 355.94157 * 9 7 6 12 12 H 1.48502 * 109.47093 * 89.78022 * 11 9 7 13 13 H 1.48505 * 109.47147 * 209.77770 * 11 9 7 14 14 H 1.48497 * 109.47338 * 329.78249 * 11 9 7 15 15 C 1.52997 * 117.49335 * 295.20716 * 6 5 4 16 16 C 1.53001 * 60.02997 * 252.49959 * 15 6 5 17 17 C 1.50697 * 109.47128 * 240.00295 * 2 1 3 18 18 C 1.38258 * 120.00000 * 285.38160 * 17 2 1 19 19 C 1.38213 * 120.00237 * 180.02562 * 18 17 2 20 20 C 1.38248 * 120.00094 * 359.95594 * 19 18 17 21 21 C 1.38215 * 119.99851 * 0.02562 * 20 19 18 22 22 N 1.48026 * 119.99899 * 180.02562 * 21 20 19 23 23 O 1.21801 * 120.00214 * 359.97438 * 22 21 20 24 24 O 1.21805 * 119.99724 * 179.97438 * 22 21 20 25 25 C 1.38214 * 120.00433 * 105.10319 * 17 2 1 26 26 H 1.08996 * 109.47600 * 59.99914 * 1 2 3 27 27 H 1.09008 * 109.47127 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47358 * 299.99773 * 1 2 3 29 29 H 1.00901 * 110.99878 * 36.73837 * 4 2 1 30 30 H 1.08992 * 109.47142 * 65.24520 * 5 4 2 31 31 H 1.09009 * 109.46845 * 305.24654 * 5 4 2 32 32 H 0.96996 * 120.00230 * 179.97438 * 10 9 7 33 33 H 1.09001 * 117.50377 * 359.97438 * 15 6 5 34 34 H 1.08999 * 117.50035 * 144.99740 * 15 6 5 35 35 H 1.08994 * 117.50289 * 107.50718 * 16 15 6 36 36 H 1.09005 * 117.49706 * 252.52313 * 16 15 6 37 37 H 1.07999 * 119.99951 * 359.97438 * 18 17 2 38 38 H 1.08000 * 120.00126 * 179.97438 * 19 18 17 39 39 H 1.08003 * 120.00532 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.99890 * 0.02562 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.1323 0.2345 2.3334 6 6 2.7664 -0.4894 3.5229 7 6 4.2683 -0.6067 3.4869 8 1 4.7319 -1.4686 3.0300 9 6 5.0507 0.3862 4.0373 10 7 6.3579 0.2471 4.0775 11 14 4.2541 1.9291 4.7259 12 1 3.9342 1.7226 6.1613 13 1 5.1900 3.0737 4.5871 14 1 3.0047 2.2176 3.9770 15 6 1.9821 -1.6462 4.1455 16 6 2.1031 -0.3159 4.8915 17 6 2.0323 -0.7103 -1.2305 18 6 1.9633 -2.0889 -1.3094 19 6 2.4245 -2.7405 -2.4377 20 6 2.9539 -2.0137 -3.4878 21 6 3.0226 -0.6355 -3.4091 22 7 3.5890 0.1428 -4.5336 23 8 3.9950 -0.4314 -5.5282 24 8 3.6491 1.3574 -4.4644 25 6 2.5567 0.0166 -2.2825 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.4285 -1.4767 1.4308 30 1 1.1404 0.5905 2.6115 31 1 2.7562 1.0820 2.0493 32 1 6.9083 0.9458 4.4644 33 1 1.0143 -1.8913 3.7080 34 1 2.5525 -2.4921 4.5291 35 1 1.2152 0.3139 4.9446 36 1 2.7535 -0.2865 5.7657 37 1 1.5498 -2.6568 -0.4891 38 1 2.3709 -3.8174 -2.4992 39 1 3.3140 -2.5227 -4.3697 40 1 2.6069 1.0938 -2.2226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430737505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:53 Heat of formation + Delta-G solvation = 30.059684 kcal Electronic energy + Delta-G solvation = -22713.493485 eV Core-core repulsion = 19303.526577 eV Total energy + Delta-G solvation = -3409.966907 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.27234 -40.77649 -39.13168 -37.71521 -36.98679 -34.17622 -32.90522 -32.65529 -30.14029 -28.01450 -27.62206 -26.14613 -24.48062 -23.65297 -23.23686 -21.96654 -20.75843 -19.80212 -19.67142 -18.64079 -18.35280 -17.53454 -16.96950 -16.69115 -16.29216 -15.58862 -15.35874 -15.21147 -14.91620 -14.71100 -14.30583 -14.18293 -13.68075 -13.41418 -13.21377 -13.09126 -12.90530 -12.73857 -12.57619 -12.46978 -12.34360 -12.25812 -12.06122 -12.02404 -11.84109 -11.51371 -10.85560 -10.59444 -10.49624 -10.27925 -10.09134 -9.17107 -8.23601 -6.26946 -1.21174 0.01751 0.34129 0.38814 1.36079 1.38874 1.49890 2.34450 2.39895 2.98859 3.12722 3.33973 3.52746 3.61687 3.86173 3.95836 4.02346 4.03391 4.18787 4.31744 4.36216 4.44202 4.51671 4.52984 4.60769 4.72885 4.80250 4.89060 4.91908 4.92397 5.06212 5.13801 5.14723 5.21206 5.30719 5.48816 5.57151 5.61782 5.77246 6.19424 6.39273 6.46697 6.67682 6.81743 7.40366 8.93004 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.004176 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.246955 B = 6703.922021 C = 7308.338461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 H 0.076 0.924 4 N -0.677 5.677 5 C 0.111 3.889 6 C -0.017 4.017 7 C -0.464 4.464 8 H 0.028 0.972 9 C 0.012 3.988 10 N -0.958 5.958 11 Si 0.940 3.060 12 H -0.271 1.271 13 H -0.306 1.306 14 H -0.233 1.233 15 C -0.156 4.156 16 C -0.204 4.204 17 C -0.062 4.062 18 C -0.041 4.041 19 C -0.106 4.106 20 C -0.063 4.063 21 C -0.064 4.064 22 N 0.033 4.967 23 O -0.167 6.167 24 O -0.202 6.202 25 C -0.065 4.065 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.349 0.651 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.261 0.739 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.162 0.838 38 H 0.184 0.816 39 H 0.166 0.834 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.841 -4.890 -10.842 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 H 0.094 0.906 4 N -0.309 5.309 5 C -0.018 4.018 6 C -0.018 4.018 7 C -0.502 4.502 8 H 0.046 0.954 9 C -0.184 4.184 10 N -0.599 5.599 11 Si 0.766 3.234 12 H -0.197 1.197 13 H -0.234 1.234 14 H -0.155 1.155 15 C -0.193 4.193 16 C -0.242 4.242 17 C -0.064 4.064 18 C -0.059 4.059 19 C -0.124 4.124 20 C -0.082 4.082 21 C -0.147 4.147 22 N 0.546 4.454 23 O -0.385 6.385 24 O -0.410 6.410 25 C -0.085 4.085 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.169 0.831 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.180 0.820 38 H 0.201 0.799 39 H 0.183 0.817 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.299 -5.062 -10.415 19.994 hybrid contribution 0.130 1.353 0.351 1.404 sum -16.170 -3.709 -10.064 19.404 Atomic orbital electron populations 1.22428 0.93512 1.03728 1.03066 1.20475 0.94483 0.96814 0.87350 0.90591 1.60168 1.56200 1.10998 1.03513 1.21509 0.96714 0.93868 0.89693 1.19290 0.92216 0.99900 0.90360 1.20408 0.89409 1.05075 1.35259 0.95418 1.25836 0.94827 1.01546 0.96213 1.70065 1.06119 1.35472 1.48216 0.85869 0.79353 0.78556 0.79661 1.19668 1.23376 1.15533 1.22765 1.01115 0.91283 1.04125 1.23073 1.02523 1.02148 0.96444 1.19928 0.97821 0.94659 0.93976 1.21785 0.93018 0.93421 0.97710 1.21624 0.97034 1.02518 0.91237 1.21360 0.95570 0.89712 1.01520 1.21252 1.11207 0.93004 0.89286 1.43979 0.97924 1.01298 1.02167 1.94472 1.49487 1.72388 1.22123 1.94535 1.61968 0.96820 1.87658 1.20951 0.94717 1.02049 0.90781 0.91219 0.90397 0.91691 0.83069 0.94525 0.93684 0.93024 0.87175 0.91016 0.88021 0.91540 0.82035 0.79904 0.81670 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 9.10 71.98 0.66 -2.02 16 2 C 0.12 2.70 2.80 44.17 0.12 2.82 16 3 H 0.08 1.94 7.49 -2.39 -0.02 1.93 16 4 N -0.68 -19.08 5.78 -495.47 -2.86 -21.94 16 5 C 0.11 3.81 4.78 86.31 0.41 4.22 16 6 C -0.02 -0.67 1.02 -52.91 -0.05 -0.73 16 7 C -0.46 -25.37 9.41 25.60 0.24 -25.13 16 8 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 9 C 0.01 0.66 5.47 84.66 0.46 1.13 16 10 N -0.96 -60.33 13.96 21.45 0.30 -60.03 16 11 Si 0.94 43.84 24.86 68.60 1.71 45.55 16 12 H -0.27 -12.18 7.10 99.48 0.71 -11.47 16 13 H -0.31 -14.71 7.11 99.48 0.71 -14.00 16 14 H -0.23 -9.58 6.18 99.48 0.61 -8.97 16 15 C -0.16 -5.26 9.58 30.59 0.29 -4.96 16 16 C -0.20 -7.51 7.58 30.62 0.23 -7.27 16 17 C -0.06 -1.37 4.95 -19.87 -0.10 -1.47 16 18 C -0.04 -0.71 9.24 22.27 0.21 -0.51 16 19 C -0.11 -1.56 10.05 22.27 0.22 -1.34 16 20 C -0.06 -1.19 9.56 22.27 0.21 -0.98 16 21 C -0.06 -1.64 6.85 36.37 0.25 -1.39 16 22 N 0.03 0.98 4.45 -46.46 -0.21 0.78 16 23 O -0.17 -5.01 18.45 18.88 0.35 -4.66 16 24 O -0.20 -6.67 18.45 18.88 0.35 -6.32 16 25 C -0.07 -1.62 9.18 22.27 0.20 -1.42 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 0.97 8.08 -2.38 -0.02 0.95 16 28 H 0.06 1.05 7.71 -2.39 -0.02 1.03 16 29 H 0.35 8.02 7.53 -89.69 -0.68 7.35 16 30 H 0.04 1.05 7.52 -2.39 -0.02 1.04 16 31 H 0.04 1.79 7.18 -2.38 -0.02 1.77 16 32 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 33 H 0.11 2.79 8.00 -2.39 -0.02 2.77 16 34 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.10 3.11 8.08 -2.39 -0.02 3.09 16 36 H 0.07 2.74 7.20 -2.38 -0.02 2.72 16 37 H 0.16 2.14 7.51 -2.91 -0.02 2.12 16 38 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.17 2.56 7.61 -2.91 -0.02 2.53 16 40 H 0.14 3.60 7.55 -2.91 -0.02 3.58 16 Total: -1.00 -71.07 338.07 3.28 -67.79 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.28 Total: 17.89 kcal Atomic # 6 Polarization: -42.42 SS G_CDS: 3.36 Total: -39.06 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.77 Total: -81.19 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.70 Total: -10.98 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.71 Total: 45.55 kcal Total: -71.07 3.28 -67.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430737505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.849 kcal (2) G-P(sol) polarization free energy of solvation -71.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds