Wall clock time and date at job start Tue Mar 31 2020 06:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 C 1.50700 * 109.47238 * 239.99850 * 2 1 3 5 5 H 1.08000 * 119.99996 * 239.99853 * 4 2 1 6 6 C 1.37872 * 119.99935 * 60.00032 * 4 2 1 7 7 N 1.31508 * 120.00217 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99939 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47370 * 60.00087 * 8 6 4 10 10 H 1.48501 * 109.47381 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47391 * 300.00125 * 8 6 4 12 12 N 1.46501 * 109.47207 * 119.99916 * 2 1 3 13 13 C 1.34781 * 119.99737 * 275.00182 * 12 2 1 14 14 O 1.21280 * 120.00245 * 359.72296 * 13 12 2 15 15 C 1.50697 * 119.99711 * 180.02562 * 13 12 2 16 16 C 1.52998 * 109.47134 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47443 * 179.97438 * 16 15 13 18 18 C 1.37980 * 120.07268 * 98.57453 * 17 16 15 19 19 C 1.38336 * 120.14751 * 179.97438 * 18 17 16 20 20 C 1.38376 * 120.28873 * 0.02562 * 19 18 17 21 21 C 1.37937 * 120.14780 * 359.97438 * 20 19 18 22 22 C 1.39557 * 120.07701 * 278.29932 * 17 16 15 23 23 C 1.47846 * 120.13824 * 359.97438 * 22 17 16 24 24 N 1.34780 * 119.99754 * 185.47374 * 23 22 17 25 25 O 1.21551 * 120.00553 * 5.47824 * 23 22 17 26 26 H 1.09005 * 109.46828 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47307 * 300.00194 * 1 2 3 28 28 H 1.09000 * 109.47163 * 60.00577 * 1 2 3 29 29 H 0.96999 * 120.00317 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00032 * 95.00257 * 12 2 1 31 31 H 1.09003 * 109.46913 * 299.99579 * 15 13 12 32 32 H 1.08998 * 109.48018 * 59.99835 * 15 13 12 33 33 H 1.09005 * 109.47341 * 299.99494 * 16 15 13 34 34 H 1.08995 * 109.47339 * 59.99635 * 16 15 13 35 35 H 1.08004 * 119.92987 * 0.02562 * 18 17 16 36 36 H 1.07994 * 119.85729 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.92784 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.07120 * 180.02562 * 21 20 19 39 39 H 0.97004 * 119.99864 * 0.02562 * 24 23 22 40 40 H 0.96994 * 120.00291 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0081 10 1 1.8270 -0.4201 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8633 1.1598 2.4104 15 6 2.6499 -0.7284 3.5875 16 6 2.7006 0.2545 4.7588 17 6 3.2029 -0.4558 5.9894 18 6 4.5275 -0.3450 6.3594 19 6 4.9902 -0.9960 7.4889 20 6 4.1292 -1.7623 8.2546 21 6 2.8026 -1.8814 7.8958 22 6 2.3281 -1.2225 6.7604 23 6 0.9060 -1.3402 6.3736 24 7 0.0403 -1.9887 7.1777 25 8 0.5175 -0.8522 5.3303 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.7090 1.1613 -3.4844 30 1 2.2490 -1.6317 1.1526 31 1 1.9776 -1.5507 3.8325 32 1 3.6492 -1.1202 3.3980 33 1 3.3726 1.0772 4.5141 34 1 1.7011 0.6459 4.9483 35 1 5.2046 0.2519 5.7663 36 1 6.0279 -0.9064 7.7740 37 1 4.4967 -2.2684 9.1351 38 1 2.1317 -2.4795 8.4946 39 1 0.3503 -2.3778 8.0105 40 1 -0.8925 -2.0662 6.9238 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000471948963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:58 Heat of formation + Delta-G solvation = -60.378777 kcal Electronic energy + Delta-G solvation = -22587.929181 eV Core-core repulsion = 19174.040568 eV Total energy + Delta-G solvation = -3413.888613 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54601 -38.60891 -38.25664 -34.87909 -34.31083 -33.25578 -32.22174 -31.11190 -30.02578 -28.42023 -25.17525 -24.82948 -23.83043 -21.77205 -20.86703 -20.36985 -19.15020 -18.11560 -17.01917 -16.93206 -16.05622 -15.48865 -15.31338 -15.14531 -15.12409 -14.83400 -14.35917 -14.04628 -13.61050 -13.30337 -13.00035 -12.59828 -12.52708 -12.22673 -11.90540 -11.63784 -11.51150 -11.20710 -10.96999 -10.89988 -10.75875 -10.53771 -10.22591 -10.12968 -9.86493 -9.63402 -9.22797 -9.02077 -8.93509 -8.68339 -8.44026 -7.71136 -6.03184 -4.12144 0.64856 1.11491 2.75000 3.30842 3.32904 3.35493 3.37117 3.63282 3.68907 4.27400 4.47183 4.51949 4.57189 4.68172 4.88921 5.11117 5.22099 5.28391 5.45931 5.48441 5.60310 5.69595 5.87683 5.98282 6.08686 6.17379 6.20257 6.41999 6.60455 6.66133 6.77226 6.97012 7.13512 7.15809 7.29937 7.63156 7.71692 7.82642 8.05111 8.15339 8.27028 8.84526 8.91993 9.35113 9.56481 11.02796 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026036 B = 0.003293 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.166018 B = 8501.670729 C = 8966.050234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.714 5.714 13 C 0.507 3.493 14 O -0.558 6.558 15 C -0.123 4.123 16 C -0.073 4.073 17 C -0.012 4.012 18 C -0.126 4.126 19 C -0.090 4.090 20 C -0.139 4.139 21 C -0.086 4.086 22 C -0.142 4.142 23 C 0.553 3.447 24 N -0.856 5.856 25 O -0.511 6.511 26 H 0.024 0.976 27 H 0.015 0.985 28 H 0.088 0.912 29 H 0.264 0.736 30 H 0.386 0.614 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.397 0.603 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 -8.329 24.053 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.361 5.361 13 C 0.293 3.707 14 O -0.437 6.437 15 C -0.164 4.164 16 C -0.110 4.110 17 C -0.013 4.013 18 C -0.144 4.144 19 C -0.109 4.109 20 C -0.157 4.157 21 C -0.104 4.104 22 C -0.145 4.145 23 C 0.339 3.661 24 N -0.421 5.421 25 O -0.387 6.387 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.218 0.782 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.226 0.774 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.474 -6.967 23.184 24.618 hybrid contribution 0.200 -1.333 -0.426 1.413 sum 4.675 -8.299 22.758 24.671 Atomic orbital electron populations 1.22061 0.98630 0.98980 1.00789 1.18683 0.90967 0.93927 0.80166 0.93512 1.21220 1.32267 1.13108 0.90473 0.92212 1.24893 0.94902 0.94988 0.99001 1.69903 1.35980 1.22489 1.23828 0.86519 0.79127 0.79579 0.81900 1.20216 1.21174 1.20214 1.46492 1.65585 1.13411 1.10661 1.20373 0.78306 0.87469 0.84597 1.90622 1.51573 1.16283 1.85232 1.21495 1.01819 0.99736 0.93313 1.20574 1.04232 0.96721 0.89469 1.20231 0.92597 0.93336 0.95183 1.21188 0.95037 1.00693 0.97497 1.21371 0.99845 0.95358 0.94293 1.21044 0.93480 1.00523 1.00606 1.21231 0.96134 0.97833 0.95230 1.19785 0.93595 1.03072 0.98038 1.18361 0.85987 0.78033 0.83721 1.43785 1.12936 1.59864 1.25468 1.90922 1.79001 1.45544 1.23233 0.95642 0.96589 0.89332 0.92614 0.78170 0.89106 0.90460 0.90887 0.87563 0.85037 0.85585 0.85613 0.85839 0.77407 0.76429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.26 37.15 0.34 -3.59 16 2 C 0.26 7.22 2.56 -69.08 -0.18 7.04 16 3 H 0.05 1.46 7.57 -51.93 -0.39 1.07 16 4 C -0.53 -14.83 8.73 -34.44 -0.30 -15.13 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -25.93 11.32 55.43 0.63 -25.30 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.71 -16.36 5.07 -54.93 -0.28 -16.64 16 13 C 0.51 11.26 7.79 -10.99 -0.09 11.17 16 14 O -0.56 -14.57 15.64 5.56 0.09 -14.48 16 15 C -0.12 -2.07 5.21 -27.89 -0.15 -2.22 16 16 C -0.07 -1.15 3.90 -27.88 -0.11 -1.26 16 17 C -0.01 -0.16 5.17 -104.22 -0.54 -0.69 16 18 C -0.13 -1.28 9.66 -39.64 -0.38 -1.67 16 19 C -0.09 -0.73 10.04 -39.49 -0.40 -1.12 16 20 C -0.14 -1.00 10.03 -39.64 -0.40 -1.40 16 21 C -0.09 -0.67 9.53 -39.19 -0.37 -1.05 16 22 C -0.14 -1.58 5.87 -104.97 -0.62 -2.19 16 23 C 0.55 6.77 7.91 -12.33 -0.10 6.67 16 24 N -0.86 -6.54 8.82 30.53 0.27 -6.27 16 25 O -0.51 -8.63 12.43 5.32 0.07 -8.57 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.39 7.74 8.54 -40.82 -0.35 7.39 16 31 H 0.09 1.51 6.57 -51.93 -0.34 1.17 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.15 7.98 -51.93 -0.41 0.74 16 34 H 0.11 1.96 5.92 -51.93 -0.31 1.66 16 35 H 0.13 1.20 8.05 -52.48 -0.42 0.77 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 38 H 0.12 0.56 6.45 -52.48 -0.34 0.23 16 39 H 0.40 1.71 6.90 -40.82 -0.28 1.42 16 40 H 0.40 2.79 8.93 -40.82 -0.36 2.42 16 LS Contribution 334.65 15.07 5.04 5.04 Total: -1.00 -35.66 334.65 -7.76 -43.42 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.18 Total: 10.20 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -3.37 Total: -3.70 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.62 Total: -48.21 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.15 Total: -23.05 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.66 -7.76 -43.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471948963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.963 kcal (2) G-P(sol) polarization free energy of solvation -35.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds