Wall clock time and date at job start Tue Mar 31 2020 06:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 C 1.50700 * 109.47238 * 239.99850 * 2 1 3 5 5 H 1.08000 * 119.99996 * 239.99853 * 4 2 1 6 6 C 1.37872 * 119.99935 * 60.00032 * 4 2 1 7 7 N 1.31508 * 120.00217 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99939 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47370 * 60.00087 * 8 6 4 10 10 H 1.48501 * 109.47381 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47391 * 300.00125 * 8 6 4 12 12 N 1.46501 * 109.47207 * 119.99916 * 2 1 3 13 13 C 1.34781 * 119.99737 * 275.00182 * 12 2 1 14 14 O 1.21280 * 120.00245 * 359.72296 * 13 12 2 15 15 C 1.50697 * 119.99711 * 180.02562 * 13 12 2 16 16 C 1.52998 * 109.47134 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47443 * 179.97438 * 16 15 13 18 18 C 1.37980 * 120.07268 * 98.57453 * 17 16 15 19 19 C 1.38336 * 120.14751 * 179.97438 * 18 17 16 20 20 C 1.38376 * 120.28873 * 0.02562 * 19 18 17 21 21 C 1.37937 * 120.14780 * 359.97438 * 20 19 18 22 22 C 1.39557 * 120.07701 * 278.29932 * 17 16 15 23 23 C 1.47846 * 120.13824 * 359.97438 * 22 17 16 24 24 N 1.34780 * 119.99754 * 185.47374 * 23 22 17 25 25 O 1.21551 * 120.00553 * 5.47824 * 23 22 17 26 26 H 1.09005 * 109.46828 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47307 * 300.00194 * 1 2 3 28 28 H 1.09000 * 109.47163 * 60.00577 * 1 2 3 29 29 H 0.96999 * 120.00317 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00032 * 95.00257 * 12 2 1 31 31 H 1.09003 * 109.46913 * 299.99579 * 15 13 12 32 32 H 1.08998 * 109.48018 * 59.99835 * 15 13 12 33 33 H 1.09005 * 109.47341 * 299.99494 * 16 15 13 34 34 H 1.08995 * 109.47339 * 59.99635 * 16 15 13 35 35 H 1.08004 * 119.92987 * 0.02562 * 18 17 16 36 36 H 1.07994 * 119.85729 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.92784 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.07120 * 180.02562 * 21 20 19 39 39 H 0.97004 * 119.99864 * 0.02562 * 24 23 22 40 40 H 0.96994 * 120.00291 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0081 10 1 1.8270 -0.4201 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8633 1.1598 2.4104 15 6 2.6499 -0.7284 3.5875 16 6 2.7006 0.2545 4.7588 17 6 3.2029 -0.4558 5.9894 18 6 4.5275 -0.3450 6.3594 19 6 4.9902 -0.9960 7.4889 20 6 4.1292 -1.7623 8.2546 21 6 2.8026 -1.8814 7.8958 22 6 2.3281 -1.2225 6.7604 23 6 0.9060 -1.3402 6.3736 24 7 0.0403 -1.9887 7.1777 25 8 0.5175 -0.8522 5.3303 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.7090 1.1613 -3.4844 30 1 2.2490 -1.6317 1.1526 31 1 1.9776 -1.5507 3.8325 32 1 3.6492 -1.1202 3.3980 33 1 3.3726 1.0772 4.5141 34 1 1.7011 0.6459 4.9483 35 1 5.2046 0.2519 5.7663 36 1 6.0279 -0.9064 7.7740 37 1 4.4967 -2.2684 9.1351 38 1 2.1317 -2.4795 8.4946 39 1 0.3503 -2.3778 8.0105 40 1 -0.8925 -2.0662 6.9238 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000471948963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:58 Heat of formation + Delta-G solvation = -87.447675 kcal Electronic energy + Delta-G solvation = -22589.102977 eV Core-core repulsion = 19174.040568 eV Total energy + Delta-G solvation = -3415.062409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44028 -40.40630 -39.08527 -36.79778 -35.42151 -34.35163 -34.21851 -31.78909 -31.49999 -30.07566 -27.37046 -26.00137 -24.69691 -23.03751 -22.25184 -21.39917 -21.04735 -18.96869 -18.78885 -17.75885 -17.53459 -17.15817 -16.61952 -16.42210 -16.10868 -15.97016 -15.73144 -15.50485 -14.82191 -14.54151 -14.40971 -13.98695 -13.97654 -13.63150 -13.50925 -13.02626 -12.86329 -12.80435 -12.69753 -12.56938 -12.29480 -12.16311 -12.08222 -11.88092 -11.13700 -10.84233 -10.67450 -10.57525 -10.55247 -9.89969 -9.73258 -9.66885 -8.17890 -6.36552 -0.08309 0.42435 1.43601 1.47044 1.54898 1.87954 1.94180 2.36078 2.58836 2.68000 2.93656 3.11651 3.77140 3.85349 3.95619 4.09126 4.14966 4.30027 4.39449 4.52010 4.56927 4.67206 4.76280 4.89011 4.89736 4.97794 5.07820 5.10882 5.28278 5.37711 5.41619 5.54623 5.60931 5.65276 5.67266 5.90318 5.94206 5.99579 6.08117 6.49169 6.71233 6.99315 7.31343 7.37955 7.59631 8.88774 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026036 B = 0.003293 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.166018 B = 8501.670729 C = 8966.050234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.004 1.004 4 C -0.549 4.549 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.978 3.022 9 H -0.263 1.263 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.710 5.710 13 C 0.500 3.500 14 O -0.604 6.604 15 C -0.105 4.105 16 C -0.064 4.064 17 C -0.039 4.039 18 C -0.137 4.137 19 C -0.085 4.085 20 C -0.129 4.129 21 C -0.077 4.077 22 C -0.158 4.158 23 C 0.546 3.454 24 N -0.833 5.833 25 O -0.571 6.571 26 H 0.038 0.962 27 H 0.005 0.995 28 H 0.069 0.931 29 H 0.266 0.734 30 H 0.403 0.597 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.416 0.584 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.701 -11.456 26.193 29.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.587 4.587 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.802 3.198 9 H -0.188 1.188 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.358 5.358 13 C 0.288 3.712 14 O -0.486 6.486 15 C -0.145 4.145 16 C -0.101 4.101 17 C -0.040 4.040 18 C -0.155 4.155 19 C -0.103 4.103 20 C -0.147 4.147 21 C -0.095 4.095 22 C -0.161 4.161 23 C 0.333 3.667 24 N -0.398 5.398 25 O -0.452 6.452 26 H 0.057 0.943 27 H 0.024 0.976 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.238 0.762 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.248 0.752 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.321 -10.162 25.402 28.080 hybrid contribution -0.374 -0.346 -0.937 1.066 sum 5.947 -10.508 24.466 27.283 Atomic orbital electron populations 1.21890 0.98697 0.99218 0.99256 1.18325 0.90903 0.91925 0.82224 0.98596 1.21527 1.32774 1.13650 0.90778 0.90771 1.25887 0.94808 0.95604 1.02519 1.70062 1.36990 1.24007 1.24737 0.85314 0.78707 0.78621 0.77175 1.18787 1.21016 1.19342 1.46301 1.65564 1.14115 1.09863 1.21376 0.77068 0.87090 0.85635 1.90592 1.53369 1.18635 1.86007 1.21420 1.02923 0.99401 0.90730 1.20327 1.02197 0.96518 0.91090 1.19982 0.94084 0.95175 0.94720 1.21295 0.94066 1.01373 0.98728 1.21740 1.01473 0.94131 0.92997 1.21534 0.92827 0.99268 1.01062 1.21615 0.97264 0.96813 0.93843 1.19822 0.92712 1.04142 0.99473 1.18720 0.87042 0.77593 0.83332 1.43595 1.12680 1.58107 1.25391 1.90902 1.80024 1.48314 1.25923 0.94299 0.97618 0.91270 0.92479 0.76218 0.88519 0.87529 0.92176 0.91008 0.84826 0.82738 0.81914 0.82256 0.75164 0.75890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.41 9.26 71.98 0.67 -6.74 16 2 C 0.27 15.34 2.56 44.24 0.11 15.46 16 3 H 0.00 -0.26 7.57 -2.39 -0.02 -0.27 16 4 C -0.55 -30.91 8.73 25.60 0.22 -30.69 16 5 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -55.30 11.32 21.44 0.24 -55.06 16 8 Si 0.98 43.51 29.54 68.60 2.03 45.53 16 9 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 12 N -0.71 -33.50 5.07 -446.10 -2.26 -35.76 16 13 C 0.50 23.29 7.79 87.66 0.68 23.97 16 14 O -0.60 -33.79 15.64 -3.03 -0.05 -33.84 16 15 C -0.11 -3.63 5.21 29.85 0.16 -3.47 16 16 C -0.06 -2.13 3.90 29.85 0.12 -2.02 16 17 C -0.04 -0.95 5.17 -19.61 -0.10 -1.05 16 18 C -0.14 -2.58 9.66 22.23 0.21 -2.37 16 19 C -0.09 -1.05 10.04 22.33 0.22 -0.83 16 20 C -0.13 -1.24 10.03 22.23 0.22 -1.02 16 21 C -0.08 -0.91 9.53 22.52 0.21 -0.70 16 22 C -0.16 -3.32 5.87 -20.09 -0.12 -3.43 16 23 C 0.55 13.27 7.91 86.79 0.69 13.96 16 24 N -0.83 -11.42 8.82 -175.60 -1.55 -12.97 16 25 O -0.57 -20.30 12.43 -3.88 -0.05 -20.35 16 26 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.07 4.15 6.07 -2.39 -0.01 4.13 16 29 H 0.27 15.07 8.31 -92.71 -0.77 14.29 16 30 H 0.40 16.16 8.54 -92.71 -0.79 15.37 16 31 H 0.10 3.28 6.57 -2.39 -0.02 3.27 16 32 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.06 2.06 7.98 -2.38 -0.02 2.04 16 34 H 0.07 2.91 5.92 -2.39 -0.01 2.89 16 35 H 0.13 2.34 8.05 -2.91 -0.02 2.31 16 36 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 37 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 38 H 0.16 0.63 6.45 -2.91 -0.02 0.61 16 39 H 0.42 2.29 6.90 -92.71 -0.64 1.65 16 40 H 0.41 5.21 8.93 -92.71 -0.83 4.38 16 Total: -1.00 -83.08 334.65 0.95 -82.13 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -1.16 Total: 28.14 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 3.75 Total: 2.18 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -3.57 Total: -103.79 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -0.10 Total: -54.19 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -83.08 0.95 -82.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471948963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.320 kcal (2) G-P(sol) polarization free energy of solvation -83.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds