Wall clock time and date at job start Tue Mar 31 2020 06:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35921 * 117.00075 * 2 1 4 4 C 1.38893 * 120.39115 * 359.97438 * 3 2 1 5 5 N 1.31896 * 121.06141 * 179.97438 * 4 3 2 6 6 C 1.31641 * 121.96277 * 359.97438 * 5 4 3 7 7 C 1.39808 * 120.65261 * 359.97438 * 6 5 4 8 8 C 1.47216 * 120.55831 * 179.97438 * 7 6 5 9 9 C 1.34808 * 120.00205 * 0.02562 * 8 7 6 10 10 C 1.46429 * 120.00058 * 179.97438 * 9 8 7 11 11 O 1.21689 * 120.00116 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99613 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00212 * 359.97438 * 12 10 9 14 14 C 1.46502 * 119.99726 * 180.02562 * 12 10 9 15 15 H 1.09000 * 109.47396 * 0.02562 * 14 12 10 16 16 C 1.53008 * 109.47134 * 119.99799 * 14 12 10 17 17 C 1.50699 * 109.47062 * 239.99675 * 14 12 10 18 18 H 1.07992 * 119.99978 * 0.02562 * 17 14 12 19 19 C 1.37876 * 119.99781 * 179.97438 * 17 14 12 20 20 N 1.31514 * 119.99924 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00053 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.46757 * 90.00204 * 21 19 17 23 23 H 1.48492 * 109.47372 * 210.00144 * 21 19 17 24 24 H 1.48502 * 109.47053 * 330.00883 * 21 19 17 25 25 C 1.38780 * 120.39272 * 180.23917 * 3 2 1 26 26 H 1.09003 * 109.47082 * 299.99861 * 1 2 3 27 27 H 1.08993 * 109.47550 * 59.99644 * 1 2 3 28 28 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.47024 * 359.97438 * 4 3 2 30 30 H 1.08009 * 119.67386 * 180.02562 * 6 5 4 31 31 H 1.08003 * 120.00156 * 180.02562 * 8 7 6 32 32 H 1.08003 * 119.99639 * 359.97438 * 9 8 7 33 33 H 1.09002 * 109.47391 * 270.00122 * 13 12 10 34 34 H 1.09001 * 109.46813 * 150.00179 * 13 12 10 35 35 H 1.09004 * 109.47041 * 30.00306 * 13 12 10 36 36 H 1.09002 * 109.47164 * 300.00444 * 16 14 12 37 37 H 1.09003 * 109.46815 * 59.99801 * 16 14 12 38 38 H 1.09000 * 109.46982 * 179.97438 * 16 14 12 39 39 H 0.97005 * 119.99751 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.88596 * 0.04552 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2976 2.3811 -0.0005 5 7 1.8826 3.5632 0.0000 6 6 3.1926 3.6924 0.0015 7 6 4.0200 2.5654 0.0032 8 6 5.4848 2.7123 0.0043 9 6 6.0391 3.9412 0.0042 10 6 7.4961 4.0873 0.0059 11 8 8.2066 3.0994 0.0069 12 7 8.0501 5.3159 0.0053 13 6 7.1946 6.5052 0.0024 14 6 9.5078 5.4621 0.0065 15 1 9.9719 4.4758 0.0073 16 6 9.9444 6.2295 -1.2432 17 6 9.9356 6.2202 1.2366 18 1 9.1958 6.5589 1.9467 19 6 11.2717 6.4805 1.4559 20 7 12.1727 6.0677 0.5914 21 14 11.8022 7.4196 2.9811 22 1 12.0628 6.4623 4.0861 23 1 13.0407 8.1839 2.6860 24 1 10.7248 8.3590 3.3837 25 6 3.4314 1.2932 -0.0050 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.2192 2.3219 -0.0014 30 1 3.6327 4.6788 0.0023 31 1 6.1155 1.8355 0.0052 32 1 5.4084 4.8180 0.0029 33 1 6.9841 6.7989 -1.0260 34 1 7.7042 7.3205 0.5161 35 1 6.2591 6.2811 0.5150 36 1 9.6348 5.6813 -2.1329 37 1 9.4803 7.2158 -1.2444 38 1 11.0289 6.3387 -1.2421 39 1 13.1127 6.2505 0.7459 40 1 4.0397 0.4007 -0.0097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492434210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:18 Heat of formation + Delta-G solvation = -13.838404 kcal Electronic energy + Delta-G solvation = -21999.028437 eV Core-core repulsion = 18587.157966 eV Total energy + Delta-G solvation = -3411.870471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88247 -39.15911 -38.43112 -35.48418 -34.41710 -32.87400 -31.93580 -30.04745 -29.00868 -27.91351 -26.14509 -25.23819 -24.45757 -23.83240 -21.89470 -20.07462 -18.34196 -18.24329 -17.22052 -16.87706 -16.50020 -16.25894 -16.23599 -15.29922 -14.57461 -14.41280 -14.23557 -14.20924 -13.93510 -13.37837 -13.16992 -12.58351 -12.47345 -12.42815 -12.40353 -11.98944 -11.91065 -11.57048 -11.31477 -11.04925 -10.91948 -10.83575 -10.69241 -10.25034 -10.17021 -9.72784 -9.21100 -9.09127 -9.04725 -8.45324 -8.42898 -7.58641 -6.07588 -4.15700 0.29772 1.02186 1.98532 2.77150 3.27345 3.33903 3.35443 3.55455 3.90000 3.97979 4.17238 4.31284 4.39423 4.53798 4.68103 4.69331 4.71767 4.88989 5.02040 5.09040 5.23208 5.24878 5.42208 5.63649 5.74819 5.78418 6.03106 6.15863 6.31737 6.35718 6.44665 6.76181 6.84041 6.84505 7.06364 7.41452 7.53444 7.66283 7.71167 8.01280 8.19102 8.50555 8.81903 9.02096 9.50667 10.97734 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.002742 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.554589 B =10208.710637 C =10292.778782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.077 3.923 4 C 0.014 3.986 5 N -0.447 5.447 6 C 0.074 3.926 7 C -0.064 4.064 8 C -0.056 4.056 9 C -0.168 4.168 10 C 0.529 3.471 11 O -0.553 6.553 12 N -0.584 5.584 13 C 0.080 3.920 14 C 0.256 3.744 15 H 0.064 0.936 16 C -0.146 4.146 17 C -0.526 4.526 18 H 0.060 0.940 19 C 0.064 3.936 20 N -0.887 5.887 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.095 4.095 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.157 0.843 30 H 0.164 0.836 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.011 0.989 37 H 0.030 0.970 38 H 0.094 0.906 39 H 0.263 0.737 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.146 -6.521 -2.369 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.030 3.970 4 C -0.143 4.143 5 N -0.156 5.156 6 C -0.085 4.085 7 C -0.067 4.067 8 C -0.077 4.077 9 C -0.189 4.189 10 C 0.318 3.682 11 O -0.434 6.434 12 N -0.314 5.314 13 C -0.063 4.063 14 C 0.156 3.844 15 H 0.082 0.918 16 C -0.205 4.205 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.525 5.525 21 Si 0.727 3.273 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.121 4.121 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.174 0.826 30 H 0.181 0.819 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.030 0.970 37 H 0.049 0.951 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.988 -6.447 -2.406 23.040 hybrid contribution 0.510 0.032 0.834 0.979 sum -21.478 -6.415 -1.572 22.470 Atomic orbital electron populations 1.23126 0.77951 1.04408 1.01610 1.86097 1.21678 1.25972 1.88633 1.19941 0.92989 0.85782 0.98330 1.22963 1.00522 0.87239 1.03602 1.67480 1.12330 1.25982 1.09781 1.23041 0.88369 0.98824 0.98266 1.19912 0.94547 0.93062 0.99131 1.22110 0.90876 0.98933 0.95737 1.23420 0.95783 0.98024 1.01687 1.18168 0.87663 0.84029 0.78356 1.90764 1.63463 1.37627 1.51568 1.48178 1.09673 1.04249 1.69321 1.21679 0.94172 0.89887 1.00602 1.18980 0.72840 0.98407 0.94165 0.91801 1.22083 1.04719 0.97922 0.95730 1.21309 0.92456 1.36335 1.06379 0.92188 1.24898 0.96416 0.95764 0.96728 1.69883 1.01397 1.45994 1.35260 0.86483 0.78079 0.79779 0.82972 1.20605 1.21122 1.19913 1.21128 0.91691 0.98271 1.01040 0.92350 0.92350 0.87855 0.82556 0.81937 0.84193 0.85320 0.93661 0.89919 0.92619 0.96969 0.95113 0.88796 0.92665 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.88 10.51 -19.49 -0.20 -3.08 16 3 C 0.08 0.80 6.70 -39.14 -0.26 0.54 16 4 C 0.01 0.14 10.21 -17.28 -0.18 -0.03 16 5 N -0.45 -5.33 10.34 -12.72 -0.13 -5.47 16 6 C 0.07 0.86 10.58 -17.05 -0.18 0.68 16 7 C -0.06 -0.77 5.88 -104.93 -0.62 -1.39 16 8 C -0.06 -0.77 9.48 -37.15 -0.35 -1.12 16 9 C -0.17 -2.54 8.62 -37.50 -0.32 -2.87 16 10 C 0.53 10.98 7.61 -12.96 -0.10 10.88 16 11 O -0.55 -13.64 15.56 5.20 0.08 -13.56 16 12 N -0.58 -12.46 2.75 -176.90 -0.49 -12.95 16 13 C 0.08 1.32 9.14 59.85 0.55 1.87 16 14 C 0.26 6.56 2.64 -69.08 -0.18 6.37 16 15 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 16 C -0.15 -3.50 8.97 37.16 0.33 -3.16 16 17 C -0.53 -14.17 7.99 -34.44 -0.28 -14.45 16 18 H 0.06 1.59 7.34 -52.49 -0.39 1.20 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.08 11.32 55.43 0.63 -24.46 16 21 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C -0.10 -1.06 9.89 -38.65 -0.38 -1.44 16 26 H 0.06 0.24 7.68 -51.93 -0.40 -0.16 16 27 H 0.06 0.23 7.67 -51.93 -0.40 -0.16 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.16 1.12 6.30 -52.49 -0.33 0.79 16 30 H 0.16 1.61 6.18 -52.48 -0.32 1.28 16 31 H 0.14 2.01 7.52 -52.48 -0.39 1.62 16 32 H 0.13 1.54 4.25 -52.48 -0.22 1.32 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 35 H 0.06 0.73 6.09 -51.93 -0.32 0.41 16 36 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 38 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.15 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -32.82 335.64 -6.18 -39.01 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.03 Total: 0.83 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.07 Total: -1.35 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.01 Total: -42.87 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.12 Total: -16.64 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.82 -6.18 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492434210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.167 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds