Wall clock time and date at job start Tue Mar 31 2020 06:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35921 * 117.00075 * 2 1 4 4 C 1.38893 * 120.39115 * 359.97438 * 3 2 1 5 5 N 1.31896 * 121.06141 * 179.97438 * 4 3 2 6 6 C 1.31641 * 121.96277 * 359.97438 * 5 4 3 7 7 C 1.39808 * 120.65261 * 359.97438 * 6 5 4 8 8 C 1.47216 * 120.55831 * 179.97438 * 7 6 5 9 9 C 1.34808 * 120.00205 * 0.02562 * 8 7 6 10 10 C 1.46429 * 120.00058 * 179.97438 * 9 8 7 11 11 O 1.21689 * 120.00116 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99613 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00212 * 359.97438 * 12 10 9 14 14 C 1.46502 * 119.99726 * 180.02562 * 12 10 9 15 15 H 1.09000 * 109.47396 * 0.02562 * 14 12 10 16 16 C 1.53008 * 109.47134 * 119.99799 * 14 12 10 17 17 C 1.50699 * 109.47062 * 239.99675 * 14 12 10 18 18 H 1.07992 * 119.99978 * 0.02562 * 17 14 12 19 19 C 1.37876 * 119.99781 * 179.97438 * 17 14 12 20 20 N 1.31514 * 119.99924 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00053 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.46757 * 90.00204 * 21 19 17 23 23 H 1.48492 * 109.47372 * 210.00144 * 21 19 17 24 24 H 1.48502 * 109.47053 * 330.00883 * 21 19 17 25 25 C 1.38780 * 120.39272 * 180.23917 * 3 2 1 26 26 H 1.09003 * 109.47082 * 299.99861 * 1 2 3 27 27 H 1.08993 * 109.47550 * 59.99644 * 1 2 3 28 28 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.47024 * 359.97438 * 4 3 2 30 30 H 1.08009 * 119.67386 * 180.02562 * 6 5 4 31 31 H 1.08003 * 120.00156 * 180.02562 * 8 7 6 32 32 H 1.08003 * 119.99639 * 359.97438 * 9 8 7 33 33 H 1.09002 * 109.47391 * 270.00122 * 13 12 10 34 34 H 1.09001 * 109.46813 * 150.00179 * 13 12 10 35 35 H 1.09004 * 109.47041 * 30.00306 * 13 12 10 36 36 H 1.09002 * 109.47164 * 300.00444 * 16 14 12 37 37 H 1.09003 * 109.46815 * 59.99801 * 16 14 12 38 38 H 1.09000 * 109.46982 * 179.97438 * 16 14 12 39 39 H 0.97005 * 119.99751 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.88596 * 0.04552 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2976 2.3811 -0.0005 5 7 1.8826 3.5632 0.0000 6 6 3.1926 3.6924 0.0015 7 6 4.0200 2.5654 0.0032 8 6 5.4848 2.7123 0.0043 9 6 6.0391 3.9412 0.0042 10 6 7.4961 4.0873 0.0059 11 8 8.2066 3.0994 0.0069 12 7 8.0501 5.3159 0.0053 13 6 7.1946 6.5052 0.0024 14 6 9.5078 5.4621 0.0065 15 1 9.9719 4.4758 0.0073 16 6 9.9444 6.2295 -1.2432 17 6 9.9356 6.2202 1.2366 18 1 9.1958 6.5589 1.9467 19 6 11.2717 6.4805 1.4559 20 7 12.1727 6.0677 0.5914 21 14 11.8022 7.4196 2.9811 22 1 12.0628 6.4623 4.0861 23 1 13.0407 8.1839 2.6860 24 1 10.7248 8.3590 3.3837 25 6 3.4314 1.2932 -0.0050 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.2192 2.3219 -0.0014 30 1 3.6327 4.6788 0.0023 31 1 6.1155 1.8355 0.0052 32 1 5.4084 4.8180 0.0029 33 1 6.9841 6.7989 -1.0260 34 1 7.7042 7.3205 0.5161 35 1 6.2591 6.2811 0.5150 36 1 9.6348 5.6813 -2.1329 37 1 9.4803 7.2158 -1.2444 38 1 11.0289 6.3387 -1.2421 39 1 13.1127 6.2505 0.7459 40 1 4.0397 0.4007 -0.0097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492434210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:18 Heat of formation + Delta-G solvation = -35.462572 kcal Electronic energy + Delta-G solvation = -21999.966132 eV Core-core repulsion = 18587.157966 eV Total energy + Delta-G solvation = -3412.808166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.67603 -40.72264 -39.19637 -37.21977 -35.54505 -34.76678 -32.86648 -31.56668 -30.29390 -28.42631 -27.58355 -27.30193 -25.62110 -24.66844 -23.23931 -21.47923 -19.73946 -19.11141 -18.53485 -18.00581 -17.92318 -17.56688 -16.94074 -16.82952 -16.10900 -16.02610 -15.33034 -15.12587 -14.75220 -14.69587 -14.37346 -14.15729 -13.92425 -13.57671 -13.53832 -13.22120 -12.95004 -12.79198 -12.74307 -12.64079 -12.51248 -12.43555 -12.18655 -12.09396 -11.89761 -11.19213 -10.79083 -10.54834 -10.48392 -9.99920 -9.43782 -9.21359 -8.14006 -6.30631 -0.67591 0.20032 0.88672 1.42329 1.43622 1.53639 2.13335 2.31144 2.40556 2.52140 2.80817 3.14001 3.38591 3.51936 3.58508 3.82443 3.92085 4.05233 4.21766 4.33568 4.40858 4.42586 4.52455 4.76348 4.77316 4.78282 4.84946 4.88041 4.90857 5.05212 5.08323 5.20425 5.31339 5.42675 5.49086 5.64104 5.67847 6.04962 6.16825 6.18714 6.77220 6.82694 6.83588 7.30956 7.46960 8.90463 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.002742 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.554589 B =10208.710637 C =10292.778782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.075 3.925 4 C 0.022 3.978 5 N -0.465 5.465 6 C 0.074 3.926 7 C -0.079 4.079 8 C -0.027 4.027 9 C -0.183 4.183 10 C 0.520 3.480 11 O -0.610 6.610 12 N -0.594 5.594 13 C 0.075 3.925 14 C 0.259 3.741 15 H 0.008 0.992 16 C -0.131 4.131 17 C -0.538 4.538 18 H 0.063 0.937 19 C 0.013 3.987 20 N -0.918 5.918 21 Si 0.966 3.034 22 H -0.283 1.283 23 H -0.280 1.280 24 H -0.260 1.260 25 C -0.101 4.101 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.122 0.878 29 H 0.187 0.813 30 H 0.180 0.820 31 H 0.126 0.874 32 H 0.166 0.834 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.019 0.981 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.264 0.736 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.411 -5.651 -1.836 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.028 3.972 4 C -0.135 4.135 5 N -0.174 5.174 6 C -0.084 4.084 7 C -0.081 4.081 8 C -0.048 4.048 9 C -0.203 4.203 10 C 0.312 3.688 11 O -0.495 6.495 12 N -0.322 5.322 13 C -0.067 4.067 14 C 0.157 3.843 15 H 0.026 0.974 16 C -0.190 4.190 17 C -0.576 4.576 18 H 0.081 0.919 19 C -0.186 4.186 20 N -0.557 5.557 21 Si 0.791 3.209 22 H -0.209 1.209 23 H -0.206 1.206 24 H -0.184 1.184 25 C -0.127 4.127 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.203 0.797 30 H 0.197 0.803 31 H 0.144 0.856 32 H 0.183 0.817 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.038 0.962 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -25.301 -5.548 -1.879 25.970 hybrid contribution 1.341 -0.423 0.639 1.545 sum -23.959 -5.971 -1.239 24.723 Atomic orbital electron populations 1.23474 0.75689 1.06198 1.02800 1.86094 1.24023 1.25371 1.88352 1.19969 0.92764 0.86532 0.97985 1.23462 1.01941 0.86603 1.01524 1.67566 1.12346 1.26772 1.10666 1.23300 0.88422 0.99309 0.97404 1.19729 0.93179 0.93864 1.01321 1.22124 0.91978 0.98061 0.92600 1.23135 0.92230 0.99900 1.05039 1.19027 0.89894 0.82992 0.76922 1.90726 1.65328 1.39273 1.54166 1.48166 1.08473 1.06225 1.69385 1.21960 0.94645 0.87522 1.02564 1.18573 0.75703 0.95374 0.94678 0.97368 1.21866 1.03057 0.98707 0.95373 1.21576 0.92841 1.36255 1.06933 0.91901 1.25761 0.96509 0.96684 0.99672 1.70030 1.01638 1.47014 1.37009 0.85439 0.78035 0.78491 0.78949 1.20904 1.20570 1.18423 1.21324 0.92618 0.98323 1.00472 0.91135 0.91073 0.85982 0.79657 0.80289 0.85622 0.81668 0.91319 0.91122 0.88733 0.96186 0.93290 0.91387 0.92644 0.82828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.82 113.37 1.11 1.20 16 2 O -0.33 -5.24 10.51 -92.66 -0.97 -6.22 16 3 C 0.08 1.39 6.70 22.56 0.15 1.54 16 4 C 0.02 0.38 10.21 84.84 0.87 1.25 16 5 N -0.46 -9.73 10.34 -194.14 -2.01 -11.73 16 6 C 0.07 1.52 10.58 85.10 0.90 2.42 16 7 C -0.08 -1.76 5.88 -20.07 -0.12 -1.87 16 8 C -0.03 -0.72 9.48 23.84 0.23 -0.49 16 9 C -0.18 -5.32 8.62 23.62 0.20 -5.12 16 10 C 0.52 22.01 7.61 86.38 0.66 22.67 16 11 O -0.61 -31.81 15.56 -4.31 -0.07 -31.88 16 12 N -0.59 -25.49 2.75 -831.80 -2.29 -27.78 16 13 C 0.08 2.31 9.14 127.77 1.17 3.48 16 14 C 0.26 13.72 2.64 44.25 0.12 13.84 16 15 H 0.01 0.53 6.90 -2.39 -0.02 0.51 16 16 C -0.13 -6.44 8.97 71.98 0.65 -5.79 16 17 C -0.54 -29.46 7.99 25.60 0.20 -29.26 16 18 H 0.06 3.32 7.34 -2.91 -0.02 3.30 16 19 C 0.01 0.73 5.30 84.65 0.45 1.18 16 20 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 21 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 25 C -0.10 -2.10 9.89 22.87 0.23 -1.88 16 26 H 0.07 0.33 7.68 -2.39 -0.02 0.31 16 27 H 0.07 0.33 7.67 -2.39 -0.02 0.31 16 28 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.19 1.93 6.30 -2.91 -0.02 1.91 16 30 H 0.18 2.91 6.18 -2.91 -0.02 2.90 16 31 H 0.13 3.72 7.52 -2.91 -0.02 3.70 16 32 H 0.17 3.44 4.25 -2.91 -0.01 3.43 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 2.36 7.02 -2.39 -0.02 2.34 16 35 H 0.09 2.15 6.09 -2.38 -0.01 2.14 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.05 2.15 7.67 -2.39 -0.02 2.14 16 38 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 39 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 40 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -74.66 335.64 4.80 -69.85 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.06 Total: 12.50 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 6.81 Total: 3.17 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -4.05 Total: -92.73 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -1.04 Total: -38.10 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -74.66 4.80 -69.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492434210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.392 kcal (2) G-P(sol) polarization free energy of solvation -74.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds