Wall clock time and date at job start Tue Mar 31 2020 06:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35755 * 116.99994 * 2 1 4 4 C 1.39303 * 120.35613 * 180.02562 * 3 2 1 5 5 C 1.38201 * 118.48679 * 179.97438 * 4 3 2 6 6 C 1.39801 * 119.10760 * 359.97438 * 5 4 3 7 7 C 1.47196 * 119.68888 * 179.97438 * 6 5 4 8 8 C 1.34803 * 120.00105 * 229.09080 * 7 6 5 9 9 C 1.46490 * 119.99940 * 7.62203 * 8 7 6 10 10 O 1.21689 * 120.00407 * 6.44564 * 9 8 7 11 11 N 1.34778 * 119.99742 * 186.44805 * 9 8 7 12 12 C 1.46495 * 120.00267 * 359.97438 * 11 9 8 13 13 C 1.46500 * 119.99697 * 180.02562 * 11 9 8 14 14 H 1.08999 * 109.47414 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47664 * 119.99869 * 13 11 9 16 16 C 1.50710 * 109.46932 * 239.99780 * 13 11 9 17 17 H 1.07998 * 119.99957 * 359.97438 * 16 13 11 18 18 C 1.37878 * 120.00022 * 180.02562 * 16 13 11 19 19 N 1.31506 * 120.00015 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99588 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47202 * 90.00059 * 20 18 16 22 22 H 1.48508 * 109.46771 * 209.99532 * 20 18 16 23 23 H 1.48488 * 109.47305 * 329.99341 * 20 18 16 24 24 N 1.32986 * 120.62043 * 359.75160 * 6 5 4 25 25 C 1.31444 * 121.65520 * 0.51415 * 24 6 5 26 26 H 1.08995 * 109.47126 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47263 * 300.00294 * 1 2 3 28 28 H 1.09004 * 109.47166 * 60.00629 * 1 2 3 29 29 H 1.08008 * 120.75514 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.44693 * 180.02562 * 5 4 3 31 31 H 1.07998 * 119.99838 * 49.09348 * 7 6 5 32 32 H 1.08002 * 120.00119 * 187.62880 * 8 7 6 33 33 H 1.09001 * 109.47337 * 90.00110 * 12 11 9 34 34 H 1.09000 * 109.47238 * 210.00282 * 12 11 9 35 35 H 1.09007 * 109.46985 * 330.00310 * 12 11 9 36 36 H 1.08997 * 109.46989 * 300.00115 * 15 13 11 37 37 H 1.09000 * 109.46973 * 59.99440 * 15 13 11 38 38 H 1.08998 * 109.47706 * 179.97438 * 15 13 11 39 39 H 0.96998 * 120.00399 * 180.02562 * 19 18 16 40 40 H 1.08001 * 119.58124 * 179.75600 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.4360 1.2911 -0.0005 5 6 4.0229 2.5423 -0.0011 6 6 3.2059 3.6768 -0.0016 7 6 3.8175 5.0157 -0.0016 8 6 3.4018 5.9466 0.8804 9 6 2.4644 5.5801 1.9448 10 8 2.1519 4.4152 2.1061 11 7 1.9480 6.5334 2.7455 12 6 2.3245 7.9358 2.5518 13 6 1.0110 6.1669 3.8104 14 1 0.8534 5.0884 3.8005 15 6 1.5878 6.5860 5.1641 16 6 -0.3039 6.8683 3.5858 17 1 -0.4289 7.5220 2.7353 18 6 -1.3470 6.6762 4.4669 19 7 -1.1946 5.8807 5.5028 20 14 -2.9765 7.5462 4.1888 21 1 -3.8559 6.6936 3.3492 22 1 -3.6331 7.7972 5.4970 23 1 -2.7360 8.8392 3.4996 24 7 1.8814 3.5576 -0.0065 25 6 1.2946 2.3814 -0.0010 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 4.0417 0.3969 -0.0005 30 1 5.0982 2.6424 -0.0019 31 1 4.5992 5.2522 -0.7082 32 1 3.7597 6.9625 0.8022 33 1 1.6320 8.4047 1.8528 34 1 2.2850 8.4580 3.5078 35 1 3.3367 7.9882 2.1506 36 1 2.5388 6.0788 5.3265 37 1 1.7451 7.6645 5.1737 38 1 0.8905 6.3137 5.9563 39 1 -1.9285 5.7452 6.1225 40 1 0.2161 2.3237 -0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492449178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:09 Heat of formation + Delta-G solvation = 6.651862 kcal Electronic energy + Delta-G solvation = -23176.324162 eV Core-core repulsion = 19765.342216 eV Total energy + Delta-G solvation = -3410.981947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.36628 -38.99446 -37.84176 -35.26753 -33.27284 -32.69612 -32.14584 -29.84535 -28.82975 -27.34450 -26.02768 -25.16758 -24.24183 -22.85511 -21.99887 -19.90756 -18.14315 -17.85692 -17.13460 -16.59557 -16.20984 -15.74591 -15.64725 -14.81153 -14.36912 -14.24248 -14.00204 -13.75946 -13.69384 -12.99644 -12.81418 -12.60886 -12.49087 -12.20177 -11.90952 -11.77046 -11.50764 -11.46298 -11.13869 -10.98781 -10.78680 -10.63743 -10.18769 -10.10959 -9.54882 -9.45140 -9.11555 -8.94108 -8.83305 -8.37615 -7.78259 -7.42003 -6.01945 -4.09038 1.04987 1.54969 2.04289 3.27647 3.29704 3.35842 3.38438 4.05617 4.13260 4.23723 4.45359 4.62088 4.85803 4.90254 5.08318 5.18570 5.25897 5.29273 5.31154 5.41028 5.50040 5.64277 5.79536 5.87049 6.05134 6.12438 6.16286 6.35507 6.44617 6.52688 6.74628 6.82162 6.89363 7.12916 7.34097 7.55019 7.62035 7.78792 8.09224 8.27427 8.37090 8.65999 8.91598 9.23284 9.57473 11.03321 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.005023 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.066771 B = 5572.578346 C = 6777.224308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.317 6.317 3 C 0.068 3.932 4 C -0.116 4.116 5 C -0.125 4.125 6 C 0.130 3.870 7 C -0.054 4.054 8 C -0.165 4.165 9 C 0.530 3.470 10 O -0.536 6.536 11 N -0.590 5.590 12 C 0.087 3.913 13 C 0.260 3.740 14 H 0.062 0.938 15 C -0.147 4.147 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.897 3.103 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 N -0.393 5.393 25 C 0.038 3.962 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.010 0.990 37 H 0.029 0.971 38 H 0.092 0.908 39 H 0.262 0.738 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.394 -4.686 -11.387 15.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.229 6.229 3 C 0.021 3.979 4 C -0.142 4.142 5 C -0.145 4.145 6 C -0.006 4.006 7 C -0.075 4.075 8 C -0.187 4.187 9 C 0.318 3.682 10 O -0.415 6.415 11 N -0.321 5.321 12 C -0.057 4.057 13 C 0.160 3.840 14 H 0.080 0.920 15 C -0.205 4.205 16 C -0.558 4.558 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.725 3.275 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 N -0.102 5.102 25 C -0.123 4.123 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.048 0.952 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.664 -4.804 -11.101 14.879 hybrid contribution -0.719 0.063 0.076 0.726 sum 7.945 -4.741 -11.025 14.393 Atomic orbital electron populations 1.23098 0.78136 1.03910 1.01948 1.85970 1.21589 1.26543 1.88780 1.20203 0.93227 0.85579 0.98877 1.20634 0.91475 0.98401 1.03685 1.21824 1.00584 0.91616 1.00472 1.19675 0.89128 0.93097 0.98654 1.21946 0.97267 0.90753 0.97505 1.23450 0.99226 0.99331 0.96679 1.18222 0.81537 0.85908 0.82484 1.90761 1.60940 1.18565 1.71220 1.48127 1.44648 1.05863 1.33453 1.21569 0.98089 0.83901 1.02129 1.18869 0.85554 0.98149 0.81465 0.92041 1.22092 0.98394 0.98250 1.01777 1.21337 0.96406 1.28026 1.10047 0.92359 1.24888 0.98675 0.95284 0.95022 1.69882 1.32164 1.36963 1.13875 0.86511 0.83656 0.79887 0.77418 1.20697 1.21196 1.19927 1.67645 1.10763 1.25925 1.05857 1.22795 1.00207 0.86937 1.02395 0.88247 0.92027 0.92553 0.84606 0.84616 0.84453 0.85059 0.93426 0.91084 0.92908 0.97095 0.95167 0.88903 0.92821 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.82 101.05 0.99 1.25 16 2 O -0.32 -4.46 10.50 -18.97 -0.20 -4.66 16 3 C 0.07 1.08 6.72 -38.84 -0.26 0.82 16 4 C -0.12 -1.65 10.11 -39.20 -0.40 -2.04 16 5 C -0.13 -1.76 9.83 -39.01 -0.38 -2.15 16 6 C 0.13 2.20 4.93 -83.15 -0.41 1.79 16 7 C -0.05 -0.78 9.88 -37.16 -0.37 -1.14 16 8 C -0.16 -2.64 9.27 -37.48 -0.35 -2.99 16 9 C 0.53 11.53 7.33 -12.94 -0.09 11.43 16 10 O -0.54 -13.49 12.05 5.20 0.06 -13.42 16 11 N -0.59 -13.13 2.75 -176.88 -0.49 -13.62 16 12 C 0.09 1.52 9.43 59.84 0.56 2.08 16 13 C 0.26 6.86 2.64 -69.08 -0.18 6.68 16 14 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 15 C -0.15 -3.61 8.95 37.16 0.33 -3.28 16 16 C -0.52 -14.45 8.37 -34.43 -0.29 -14.74 16 17 H 0.06 1.61 7.65 -52.49 -0.40 1.21 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -25.71 11.32 55.43 0.63 -25.09 16 20 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 N -0.39 -7.67 7.66 -9.77 -0.07 -7.75 16 25 C 0.04 0.67 10.20 -17.37 -0.18 0.49 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.71 7.67 -51.93 -0.40 0.31 16 28 H 0.06 0.53 7.67 -51.93 -0.40 0.14 16 29 H 0.14 1.56 8.06 -52.48 -0.42 1.13 16 30 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.13 1.63 6.15 -52.49 -0.32 1.31 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.24 6.42 -51.93 -0.33 0.91 16 35 H 0.05 0.71 6.02 -51.93 -0.31 0.40 16 36 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 38 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.15 2.43 6.31 -52.49 -0.33 2.10 16 LS Contribution 332.35 15.07 5.01 5.01 Total: -1.00 -34.67 332.35 -6.39 -41.05 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.19 Total: 2.15 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.11 Total: -0.14 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.07 Total: -46.45 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.14 Total: -18.09 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.67 -6.39 -41.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492449178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.705 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds