Wall clock time and date at job start Tue Mar 31 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35755 * 116.99994 * 2 1 4 4 C 1.39303 * 120.35613 * 180.02562 * 3 2 1 5 5 C 1.38201 * 118.48679 * 179.97438 * 4 3 2 6 6 C 1.39801 * 119.10760 * 359.97438 * 5 4 3 7 7 C 1.47196 * 119.68888 * 179.97438 * 6 5 4 8 8 C 1.34803 * 120.00105 * 229.09080 * 7 6 5 9 9 C 1.46490 * 119.99940 * 7.62203 * 8 7 6 10 10 O 1.21689 * 120.00407 * 6.44564 * 9 8 7 11 11 N 1.34778 * 119.99742 * 186.44805 * 9 8 7 12 12 C 1.46495 * 120.00267 * 359.97438 * 11 9 8 13 13 C 1.46500 * 119.99697 * 180.02562 * 11 9 8 14 14 H 1.08999 * 109.47414 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47664 * 119.99869 * 13 11 9 16 16 C 1.50710 * 109.46932 * 239.99780 * 13 11 9 17 17 H 1.07998 * 119.99957 * 359.97438 * 16 13 11 18 18 C 1.37878 * 120.00022 * 180.02562 * 16 13 11 19 19 N 1.31506 * 120.00015 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99588 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47202 * 90.00059 * 20 18 16 22 22 H 1.48508 * 109.46771 * 209.99532 * 20 18 16 23 23 H 1.48488 * 109.47305 * 329.99341 * 20 18 16 24 24 N 1.32986 * 120.62043 * 359.75160 * 6 5 4 25 25 C 1.31444 * 121.65520 * 0.51415 * 24 6 5 26 26 H 1.08995 * 109.47126 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47263 * 300.00294 * 1 2 3 28 28 H 1.09004 * 109.47166 * 60.00629 * 1 2 3 29 29 H 1.08008 * 120.75514 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.44693 * 180.02562 * 5 4 3 31 31 H 1.07998 * 119.99838 * 49.09348 * 7 6 5 32 32 H 1.08002 * 120.00119 * 187.62880 * 8 7 6 33 33 H 1.09001 * 109.47337 * 90.00110 * 12 11 9 34 34 H 1.09000 * 109.47238 * 210.00282 * 12 11 9 35 35 H 1.09007 * 109.46985 * 330.00310 * 12 11 9 36 36 H 1.08997 * 109.46989 * 300.00115 * 15 13 11 37 37 H 1.09000 * 109.46973 * 59.99440 * 15 13 11 38 38 H 1.08998 * 109.47706 * 179.97438 * 15 13 11 39 39 H 0.96998 * 120.00399 * 180.02562 * 19 18 16 40 40 H 1.08001 * 119.58124 * 179.75600 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.4360 1.2911 -0.0005 5 6 4.0229 2.5423 -0.0011 6 6 3.2059 3.6768 -0.0016 7 6 3.8175 5.0157 -0.0016 8 6 3.4018 5.9466 0.8804 9 6 2.4644 5.5801 1.9448 10 8 2.1519 4.4152 2.1061 11 7 1.9480 6.5334 2.7455 12 6 2.3245 7.9358 2.5518 13 6 1.0110 6.1669 3.8104 14 1 0.8534 5.0884 3.8005 15 6 1.5878 6.5860 5.1641 16 6 -0.3039 6.8683 3.5858 17 1 -0.4289 7.5220 2.7353 18 6 -1.3470 6.6762 4.4669 19 7 -1.1946 5.8807 5.5028 20 14 -2.9765 7.5462 4.1888 21 1 -3.8559 6.6936 3.3492 22 1 -3.6331 7.7972 5.4970 23 1 -2.7360 8.8392 3.4996 24 7 1.8814 3.5576 -0.0065 25 6 1.2946 2.3814 -0.0010 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 4.0417 0.3969 -0.0005 30 1 5.0982 2.6424 -0.0019 31 1 4.5992 5.2522 -0.7082 32 1 3.7597 6.9625 0.8022 33 1 1.6320 8.4047 1.8528 34 1 2.2850 8.4580 3.5078 35 1 3.3367 7.9882 2.1506 36 1 2.5388 6.0788 5.3265 37 1 1.7451 7.6645 5.1737 38 1 0.8905 6.3137 5.9563 39 1 -1.9285 5.7452 6.1225 40 1 0.2161 2.3237 -0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492449178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:08 Heat of formation + Delta-G solvation = -16.824961 kcal Electronic energy + Delta-G solvation = -23177.342194 eV Core-core repulsion = 19765.342216 eV Total energy + Delta-G solvation = -3411.999978 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.55070 -40.52964 -39.04448 -37.05179 -34.83145 -34.38083 -33.31776 -31.58763 -30.21229 -28.35869 -27.54731 -27.28403 -25.58646 -24.08615 -23.42462 -21.55642 -19.51813 -19.05330 -18.63528 -18.24616 -17.77756 -17.28216 -16.80609 -16.53111 -15.90575 -15.72533 -15.18984 -15.07726 -14.95386 -14.48896 -14.19496 -14.11089 -13.93042 -13.67972 -13.43758 -13.09356 -12.95242 -12.82155 -12.73141 -12.68930 -12.61667 -12.27633 -12.17821 -12.09384 -11.18104 -10.76541 -10.64011 -10.56585 -10.38073 -10.15666 -9.20647 -8.98459 -8.14871 -6.31374 -0.13941 0.37138 0.84898 1.38207 1.39547 1.49984 2.24989 2.33727 2.58780 2.65609 2.96255 3.12188 3.51701 3.70178 3.80113 3.97867 4.11183 4.28752 4.32457 4.35682 4.52083 4.60378 4.64042 4.69658 4.75352 4.83085 4.86917 4.94843 5.01460 5.05179 5.09245 5.28454 5.38406 5.48434 5.61497 5.70193 5.74353 6.09225 6.17876 6.22604 6.77354 6.97555 7.16097 7.35274 7.64639 8.89113 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.005023 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.066771 B = 5572.578346 C = 6777.224308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.322 6.322 3 C 0.063 3.937 4 C -0.121 4.121 5 C -0.114 4.114 6 C 0.096 3.904 7 C -0.026 4.026 8 C -0.186 4.186 9 C 0.515 3.485 10 O -0.584 6.584 11 N -0.603 5.603 12 C 0.084 3.916 13 C 0.266 3.734 14 H 0.002 0.998 15 C -0.131 4.131 16 C -0.534 4.534 17 H 0.056 0.944 18 C 0.013 3.987 19 N -0.920 5.920 20 Si 0.964 3.036 21 H -0.283 1.283 22 H -0.278 1.278 23 H -0.262 1.262 24 N -0.435 5.435 25 C 0.006 3.994 26 H 0.131 0.869 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.167 0.833 30 H 0.179 0.821 31 H 0.196 0.804 32 H 0.174 0.826 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.017 0.983 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.264 0.736 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.360 -3.658 -13.062 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.235 6.235 3 C 0.015 3.985 4 C -0.147 4.147 5 C -0.133 4.133 6 C -0.040 4.040 7 C -0.046 4.046 8 C -0.207 4.207 9 C 0.306 3.694 10 O -0.466 6.466 11 N -0.333 5.333 12 C -0.058 4.058 13 C 0.164 3.836 14 H 0.020 0.980 15 C -0.189 4.189 16 C -0.572 4.572 17 H 0.074 0.926 18 C -0.186 4.186 19 N -0.559 5.559 20 Si 0.789 3.211 21 H -0.209 1.209 22 H -0.203 1.203 23 H -0.186 1.186 24 N -0.145 5.145 25 C -0.154 4.154 26 H 0.149 0.851 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.184 0.816 30 H 0.197 0.803 31 H 0.213 0.787 32 H 0.191 0.809 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.641 -3.750 -12.794 17.058 hybrid contribution -1.315 -0.403 0.558 1.484 sum 9.326 -4.153 -12.236 15.935 Atomic orbital electron populations 1.23328 0.76674 1.05882 1.01701 1.85959 1.23147 1.25798 1.88547 1.20374 0.94155 0.85439 0.98491 1.21121 0.91040 0.99896 1.02638 1.22295 1.02457 0.90571 0.98023 1.20346 0.88811 0.95497 0.99382 1.22619 0.96557 0.88666 0.96766 1.23405 0.99348 1.01913 0.96075 1.19272 0.81777 0.85146 0.83224 1.90738 1.62727 1.20570 1.72562 1.48142 1.44173 1.08190 1.32804 1.21811 1.00773 0.80915 1.02309 1.18398 0.86803 0.94557 0.83866 0.98001 1.21861 0.97759 0.99327 0.99987 1.21572 0.97545 1.28101 1.09996 0.92619 1.25742 1.02209 0.95923 0.94706 1.70028 1.33207 1.38030 1.14618 0.85473 0.79047 0.79030 0.77576 1.20945 1.20308 1.18570 1.67554 1.12737 1.26955 1.07258 1.22840 1.00467 0.87740 1.04349 0.85079 0.93623 0.91540 0.81595 0.80332 0.78681 0.80904 0.93291 0.91475 0.88149 0.96343 0.93307 0.91591 0.92725 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.82 113.37 1.11 1.52 16 2 O -0.32 -9.11 10.50 -90.81 -0.95 -10.07 16 3 C 0.06 2.01 6.72 22.75 0.15 2.16 16 4 C -0.12 -3.26 10.11 22.52 0.23 -3.03 16 5 C -0.11 -2.94 9.83 22.64 0.22 -2.72 16 6 C 0.10 3.11 4.93 41.70 0.21 3.32 16 7 C -0.03 -0.66 9.88 23.84 0.24 -0.43 16 8 C -0.19 -5.47 9.27 23.63 0.22 -5.25 16 9 C 0.51 22.53 7.33 86.39 0.63 23.17 16 10 O -0.58 -30.71 12.05 -4.31 -0.05 -30.77 16 11 N -0.60 -27.03 2.75 -831.74 -2.29 -29.32 16 12 C 0.08 2.77 9.43 127.77 1.21 3.98 16 13 C 0.27 14.62 2.64 44.25 0.12 14.74 16 14 H 0.00 0.13 6.90 -2.39 -0.02 0.12 16 15 C -0.13 -6.61 8.95 71.98 0.64 -5.97 16 16 C -0.53 -30.50 8.37 25.60 0.21 -30.28 16 17 H 0.06 3.13 7.65 -2.91 -0.02 3.11 16 18 C 0.01 0.76 5.30 84.66 0.45 1.20 16 19 N -0.92 -54.95 11.32 21.45 0.24 -54.70 16 20 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 24 N -0.44 -17.50 7.66 -184.83 -1.42 -18.92 16 25 C 0.01 0.23 10.20 84.98 0.87 1.10 16 26 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 1.14 7.67 -2.39 -0.02 1.12 16 28 H 0.07 1.31 7.67 -2.38 -0.02 1.29 16 29 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.20 2.53 8.06 -2.91 -0.02 2.50 16 32 H 0.17 3.47 6.15 -2.91 -0.02 3.45 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 2.24 6.42 -2.39 -0.02 2.22 16 35 H 0.10 2.32 6.02 -2.38 -0.01 2.30 16 36 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.05 2.22 6.66 -2.39 -0.02 2.21 16 38 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 39 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.15 5.19 6.31 -2.91 -0.02 5.17 16 Total: -1.00 -81.81 332.35 5.11 -76.70 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 1.05 Total: 16.88 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 6.51 Total: 3.52 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -3.46 Total: -102.94 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -1.01 Total: -40.83 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -81.81 5.11 -76.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492449178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.872 kcal (2) G-P(sol) polarization free energy of solvation -81.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds