Wall clock time and date at job start Tue Mar 31 2020 06:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35766 * 116.99644 * 2 1 4 4 C 1.39309 * 120.34848 * 180.02562 * 3 2 1 5 5 C 1.38203 * 118.47736 * 180.02562 * 4 3 2 6 6 C 1.39803 * 119.11153 * 0.02562 * 5 4 3 7 7 C 1.47193 * 119.68754 * 179.97438 * 6 5 4 8 8 C 1.34813 * 119.99632 * 180.02562 * 7 6 5 9 9 C 1.46489 * 119.99559 * 180.27653 * 8 7 6 10 10 O 1.21683 * 120.00296 * 359.71966 * 9 8 7 11 11 N 1.34783 * 119.99713 * 179.72028 * 9 8 7 12 12 C 1.46506 * 119.99859 * 0.02562 * 11 9 8 13 13 C 1.46498 * 119.99903 * 179.97438 * 11 9 8 14 14 H 1.08996 * 109.47314 * 0.02562 * 13 11 9 15 15 C 1.52999 * 109.46799 * 120.00295 * 13 11 9 16 16 C 1.50701 * 109.47180 * 240.00039 * 13 11 9 17 17 H 1.08000 * 119.99870 * 0.02562 * 16 13 11 18 18 C 1.37878 * 120.00079 * 180.02562 * 16 13 11 19 19 N 1.31509 * 119.99852 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99960 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47291 * 90.00151 * 20 18 16 22 22 H 1.48503 * 109.46661 * 210.00084 * 20 18 16 23 23 H 1.48497 * 109.46961 * 329.99437 * 20 18 16 24 24 N 1.32985 * 120.61892 * 0.26863 * 6 5 4 25 25 C 1.31441 * 121.65573 * 359.43653 * 24 6 5 26 26 H 1.09004 * 109.47291 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47341 * 299.99946 * 1 2 3 28 28 H 1.09003 * 109.47289 * 59.99802 * 1 2 3 29 29 H 1.07996 * 120.76122 * 0.02562 * 4 3 2 30 30 H 1.07999 * 120.44403 * 179.97438 * 5 4 3 31 31 H 1.07992 * 120.00581 * 359.97438 * 7 6 5 32 32 H 1.08002 * 119.99790 * 359.97438 * 8 7 6 33 33 H 1.08994 * 109.47014 * 89.99702 * 12 11 9 34 34 H 1.09002 * 109.46900 * 209.99892 * 12 11 9 35 35 H 1.09003 * 109.47017 * 329.99484 * 12 11 9 36 36 H 1.09001 * 109.47339 * 299.99927 * 15 13 11 37 37 H 1.09006 * 109.47230 * 59.99788 * 15 13 11 38 38 H 1.09003 * 109.47126 * 179.97438 * 15 13 11 39 39 H 0.96998 * 120.00342 * 180.02562 * 19 18 16 40 40 H 1.08003 * 119.58709 * 180.26235 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.4360 1.2912 -0.0005 5 6 4.0228 2.5424 0.0000 6 6 3.2057 3.6769 0.0017 7 6 3.8173 5.0157 0.0028 8 6 3.0353 6.1139 0.0049 9 6 3.6439 7.4463 0.0000 10 8 4.8552 7.5620 -0.0008 11 7 2.8621 8.5443 -0.0036 12 6 1.4037 8.4050 -0.0020 13 6 3.4707 9.8768 -0.0080 14 1 4.5564 9.7804 -0.0081 15 6 3.0265 10.6362 -1.2597 16 6 3.0332 10.6329 1.2200 17 1 2.3687 10.1673 1.9327 18 6 3.4814 11.9192 1.4337 19 7 4.2910 12.4861 0.5662 20 14 2.9397 12.8562 2.9562 21 1 3.8997 12.6035 4.0606 22 1 2.9024 14.3099 2.6555 23 1 1.5862 12.4000 3.3626 24 7 1.8812 3.5576 0.0080 25 6 1.2945 2.3815 0.0020 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 4.0416 0.3970 -0.0014 30 1 5.0981 2.6425 0.0001 31 1 4.8923 5.1184 0.0029 32 1 1.9602 6.0112 0.0053 33 1 1.0428 8.3743 1.0260 34 1 0.9571 9.2545 -0.5188 35 1 1.1262 7.4826 -0.5122 36 1 3.3428 10.0894 -2.1479 37 1 1.9407 10.7326 -1.2600 38 1 3.4789 11.6279 -1.2628 39 1 4.6067 13.3908 0.7166 40 1 0.2160 2.3235 0.0032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492449179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:11 Heat of formation + Delta-G solvation = -12.301751 kcal Electronic energy + Delta-G solvation = -22004.729756 eV Core-core repulsion = 18592.925919 eV Total energy + Delta-G solvation = -3411.803837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85746 -39.06783 -38.44028 -35.36422 -33.55700 -32.75110 -32.69613 -30.08729 -29.01007 -27.78769 -26.08864 -25.19550 -24.67454 -23.37999 -21.96832 -19.96229 -18.51456 -18.13655 -17.32369 -16.75780 -16.38673 -16.24533 -15.58332 -15.26624 -14.60211 -14.47578 -14.33178 -14.19025 -13.94408 -13.35869 -12.96980 -12.65875 -12.53940 -12.34952 -12.29685 -11.97289 -11.93577 -11.49953 -11.18464 -11.01530 -10.79990 -10.66772 -10.21677 -10.12987 -10.10707 -9.83312 -9.69368 -9.14735 -8.96644 -8.39104 -8.16682 -7.50584 -6.03601 -4.11337 0.47124 0.96910 2.01680 2.79129 3.29907 3.36135 3.38346 3.61113 3.95130 4.09020 4.12683 4.30111 4.42494 4.54214 4.63941 4.72354 4.80201 5.02994 5.12266 5.26253 5.28145 5.41638 5.47409 5.59898 5.82195 5.87228 6.14766 6.23691 6.36987 6.46429 6.58326 6.81227 6.83378 6.88130 7.10352 7.49157 7.57395 7.72644 7.75679 8.05862 8.23629 8.57692 8.87306 9.09469 9.55005 11.01734 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030564 B = 0.002815 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.876466 B = 9944.463942 C =10206.841630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.312 6.312 3 C 0.070 3.930 4 C -0.109 4.109 5 C -0.112 4.112 6 C 0.120 3.880 7 C -0.064 4.064 8 C -0.146 4.146 9 C 0.527 3.473 10 O -0.556 6.556 11 N -0.585 5.585 12 C 0.085 3.915 13 C 0.256 3.744 14 H 0.064 0.936 15 C -0.147 4.147 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 N -0.440 5.440 25 C 0.026 3.974 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.012 0.988 37 H 0.030 0.970 38 H 0.094 0.906 39 H 0.263 0.737 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 -22.799 -2.529 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.224 6.224 3 C 0.023 3.977 4 C -0.135 4.135 5 C -0.132 4.132 6 C -0.015 4.015 7 C -0.084 4.084 8 C -0.169 4.169 9 C 0.316 3.684 10 O -0.437 6.437 11 N -0.315 5.315 12 C -0.059 4.059 13 C 0.156 3.844 14 H 0.082 0.918 15 C -0.206 4.206 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 N -0.149 5.149 25 C -0.135 4.135 26 H 0.121 0.879 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.162 0.838 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.031 0.969 37 H 0.049 0.951 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.671 -21.969 -2.559 23.410 hybrid contribution -0.275 -0.106 0.870 0.918 sum -7.946 -22.075 -1.689 23.522 Atomic orbital electron populations 1.23142 0.77886 1.04383 1.01780 1.86034 1.21760 1.26173 1.88439 1.20252 0.93301 0.85718 0.98442 1.20859 0.91560 0.98853 1.02198 1.22102 1.01653 0.91228 0.98247 1.20020 0.88565 0.93877 0.99057 1.22013 1.00024 0.88592 0.97794 1.23496 1.01372 0.92644 0.99374 1.18311 0.86932 0.84913 0.78252 1.90745 1.14049 1.87200 1.51691 1.48167 1.06065 1.07875 1.69343 1.21626 0.81650 1.01382 1.01252 1.18968 0.95626 0.75738 0.94101 0.91790 1.22096 0.99327 1.03323 0.95806 1.21329 1.29770 0.98749 1.06410 0.92255 1.24895 0.94882 0.97354 0.96709 1.69879 1.32922 1.14661 1.35227 0.86487 0.78989 0.78855 0.83009 1.20627 1.21147 1.19924 1.67587 1.11442 1.26343 1.09561 1.22917 1.00491 0.86922 1.03123 0.87899 0.92249 0.92265 0.83822 0.83427 0.83923 0.84500 0.93201 0.90866 0.92506 0.96912 0.95069 0.88761 0.92718 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.71 10.50 -19.01 -0.20 -2.91 16 3 C 0.07 0.70 6.72 -38.84 -0.26 0.44 16 4 C -0.11 -1.03 10.11 -39.20 -0.40 -1.42 16 5 C -0.11 -1.16 9.83 -39.01 -0.38 -1.55 16 6 C 0.12 1.58 6.70 -83.15 -0.56 1.02 16 7 C -0.06 -0.96 9.44 -37.16 -0.35 -1.31 16 8 C -0.15 -2.50 8.74 -37.47 -0.33 -2.83 16 9 C 0.53 11.54 7.61 -12.93 -0.10 11.44 16 10 O -0.56 -14.10 15.56 5.20 0.08 -14.02 16 11 N -0.58 -13.08 2.75 -176.88 -0.49 -13.57 16 12 C 0.08 1.51 9.39 59.85 0.56 2.07 16 13 C 0.26 6.72 2.64 -69.08 -0.18 6.54 16 14 H 0.06 1.94 6.90 -51.93 -0.36 1.58 16 15 C -0.15 -3.59 8.95 37.16 0.33 -3.26 16 16 C -0.52 -14.49 8.37 -34.44 -0.29 -14.78 16 17 H 0.06 1.62 7.64 -52.49 -0.40 1.22 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -25.48 11.32 55.43 0.63 -24.86 16 20 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 N -0.44 -5.81 9.31 -9.77 -0.09 -5.90 16 25 C 0.03 0.27 10.21 -17.38 -0.18 0.10 16 26 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 28 H 0.06 0.24 7.68 -51.93 -0.40 -0.15 16 29 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.14 2.11 7.52 -52.49 -0.39 1.72 16 32 H 0.14 2.13 5.56 -52.49 -0.29 1.84 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.29 6.43 -51.93 -0.33 0.96 16 35 H 0.06 0.83 6.09 -51.93 -0.32 0.51 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 38 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 40 H 0.16 1.23 6.31 -52.48 -0.33 0.90 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -33.49 337.50 -6.37 -39.86 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.13 Total: 0.73 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.23 Total: -0.77 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.05 Total: -44.33 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.12 Total: -16.93 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.49 -6.37 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492449179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.558 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds