Wall clock time and date at job start Tue Mar 31 2020 06:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35766 * 116.99644 * 2 1 4 4 C 1.39309 * 120.34848 * 180.02562 * 3 2 1 5 5 C 1.38203 * 118.47736 * 180.02562 * 4 3 2 6 6 C 1.39803 * 119.11153 * 0.02562 * 5 4 3 7 7 C 1.47193 * 119.68754 * 179.97438 * 6 5 4 8 8 C 1.34813 * 119.99632 * 180.02562 * 7 6 5 9 9 C 1.46489 * 119.99559 * 180.27653 * 8 7 6 10 10 O 1.21683 * 120.00296 * 359.71966 * 9 8 7 11 11 N 1.34783 * 119.99713 * 179.72028 * 9 8 7 12 12 C 1.46506 * 119.99859 * 0.02562 * 11 9 8 13 13 C 1.46498 * 119.99903 * 179.97438 * 11 9 8 14 14 H 1.08996 * 109.47314 * 0.02562 * 13 11 9 15 15 C 1.52999 * 109.46799 * 120.00295 * 13 11 9 16 16 C 1.50701 * 109.47180 * 240.00039 * 13 11 9 17 17 H 1.08000 * 119.99870 * 0.02562 * 16 13 11 18 18 C 1.37878 * 120.00079 * 180.02562 * 16 13 11 19 19 N 1.31509 * 119.99852 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99960 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47291 * 90.00151 * 20 18 16 22 22 H 1.48503 * 109.46661 * 210.00084 * 20 18 16 23 23 H 1.48497 * 109.46961 * 329.99437 * 20 18 16 24 24 N 1.32985 * 120.61892 * 0.26863 * 6 5 4 25 25 C 1.31441 * 121.65573 * 359.43653 * 24 6 5 26 26 H 1.09004 * 109.47291 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47341 * 299.99946 * 1 2 3 28 28 H 1.09003 * 109.47289 * 59.99802 * 1 2 3 29 29 H 1.07996 * 120.76122 * 0.02562 * 4 3 2 30 30 H 1.07999 * 120.44403 * 179.97438 * 5 4 3 31 31 H 1.07992 * 120.00581 * 359.97438 * 7 6 5 32 32 H 1.08002 * 119.99790 * 359.97438 * 8 7 6 33 33 H 1.08994 * 109.47014 * 89.99702 * 12 11 9 34 34 H 1.09002 * 109.46900 * 209.99892 * 12 11 9 35 35 H 1.09003 * 109.47017 * 329.99484 * 12 11 9 36 36 H 1.09001 * 109.47339 * 299.99927 * 15 13 11 37 37 H 1.09006 * 109.47230 * 59.99788 * 15 13 11 38 38 H 1.09003 * 109.47126 * 179.97438 * 15 13 11 39 39 H 0.96998 * 120.00342 * 180.02562 * 19 18 16 40 40 H 1.08003 * 119.58709 * 180.26235 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.4360 1.2912 -0.0005 5 6 4.0228 2.5424 0.0000 6 6 3.2057 3.6769 0.0017 7 6 3.8173 5.0157 0.0028 8 6 3.0353 6.1139 0.0049 9 6 3.6439 7.4463 0.0000 10 8 4.8552 7.5620 -0.0008 11 7 2.8621 8.5443 -0.0036 12 6 1.4037 8.4050 -0.0020 13 6 3.4707 9.8768 -0.0080 14 1 4.5564 9.7804 -0.0081 15 6 3.0265 10.6362 -1.2597 16 6 3.0332 10.6329 1.2200 17 1 2.3687 10.1673 1.9327 18 6 3.4814 11.9192 1.4337 19 7 4.2910 12.4861 0.5662 20 14 2.9397 12.8562 2.9562 21 1 3.8997 12.6035 4.0606 22 1 2.9024 14.3099 2.6555 23 1 1.5862 12.4000 3.3626 24 7 1.8812 3.5576 0.0080 25 6 1.2945 2.3815 0.0020 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 4.0416 0.3970 -0.0014 30 1 5.0981 2.6425 0.0001 31 1 4.8923 5.1184 0.0029 32 1 1.9602 6.0112 0.0053 33 1 1.0428 8.3743 1.0260 34 1 0.9571 9.2545 -0.5188 35 1 1.1262 7.4826 -0.5122 36 1 3.3428 10.0894 -2.1479 37 1 1.9407 10.7326 -1.2600 38 1 3.4789 11.6279 -1.2628 39 1 4.6067 13.3908 0.7166 40 1 0.2160 2.3235 0.0032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492449179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:10 Heat of formation + Delta-G solvation = -34.254042 kcal Electronic energy + Delta-G solvation = -22005.681678 eV Core-core repulsion = 18592.925919 eV Total energy + Delta-G solvation = -3412.755760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.64175 -40.71038 -39.22921 -37.20433 -34.95169 -34.51051 -33.51325 -31.65928 -30.30936 -28.34164 -27.64837 -27.28931 -25.81847 -24.26260 -23.28263 -21.52078 -19.62280 -19.17070 -18.68975 -18.30108 -17.86393 -17.03544 -16.83013 -16.70162 -16.15480 -16.03215 -15.33400 -15.11494 -14.81044 -14.74638 -14.42690 -14.09861 -13.96251 -13.60172 -13.48335 -13.19008 -12.95329 -12.76646 -12.74723 -12.69658 -12.54127 -12.52527 -12.17546 -12.09964 -11.19281 -11.12203 -10.75301 -10.69229 -10.52602 -10.50072 -9.39285 -9.02852 -8.14269 -6.31152 -0.53757 0.19608 0.88266 1.41475 1.42876 1.53162 2.20124 2.28862 2.40049 2.50411 2.88053 3.13160 3.20665 3.56570 3.60592 3.92873 4.02308 4.22079 4.33356 4.40576 4.40937 4.48906 4.59621 4.68976 4.77611 4.78682 4.85488 4.88907 4.95971 5.02411 5.05892 5.27034 5.36066 5.43614 5.47393 5.66703 5.67559 6.04029 6.16013 6.18109 6.76117 6.81158 6.86963 7.30113 7.46403 8.90187 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030564 B = 0.002815 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.876466 B = 9944.463942 C =10206.841630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.082 3.918 4 C -0.114 4.114 5 C -0.101 4.101 6 C 0.084 3.916 7 C -0.028 4.028 8 C -0.174 4.174 9 C 0.521 3.479 10 O -0.607 6.607 11 N -0.595 5.595 12 C 0.084 3.916 13 C 0.259 3.741 14 H 0.010 0.990 15 C -0.133 4.133 16 C -0.539 4.539 17 H 0.059 0.941 18 C 0.014 3.986 19 N -0.917 5.917 20 Si 0.967 3.033 21 H -0.282 1.282 22 H -0.278 1.278 23 H -0.262 1.262 24 N -0.458 5.458 25 C 0.017 3.983 26 H 0.124 0.876 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.170 0.830 30 H 0.170 0.830 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.020 0.980 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.265 0.735 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.960 -25.310 -2.014 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.034 3.966 4 C -0.140 4.140 5 C -0.120 4.120 6 C -0.051 4.051 7 C -0.049 4.049 8 C -0.196 4.196 9 C 0.313 3.687 10 O -0.492 6.492 11 N -0.324 5.324 12 C -0.058 4.058 13 C 0.157 3.843 14 H 0.028 0.972 15 C -0.191 4.191 16 C -0.578 4.578 17 H 0.077 0.923 18 C -0.185 4.185 19 N -0.556 5.556 20 Si 0.791 3.209 21 H -0.208 1.208 22 H -0.203 1.203 23 H -0.186 1.186 24 N -0.168 5.168 25 C -0.144 4.144 26 H 0.142 0.858 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.187 0.813 30 H 0.187 0.813 31 H 0.157 0.843 32 H 0.172 0.828 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.734 -24.501 -2.050 26.443 hybrid contribution 0.331 0.380 0.685 0.850 sum -9.403 -24.121 -1.365 25.925 Atomic orbital electron populations 1.23479 0.75835 1.06232 1.02713 1.86047 1.23891 1.25407 1.87781 1.20425 0.93693 0.86098 0.96417 1.21190 0.91878 0.99337 1.01615 1.22322 1.02596 0.90718 0.96390 1.19852 0.89247 0.93346 1.02615 1.22194 0.99855 0.89494 0.93349 1.23101 1.02019 0.90179 1.04340 1.19060 0.86393 0.86442 0.76828 1.90700 1.16246 1.88068 1.54174 1.48164 1.08040 1.06627 1.69521 1.21835 0.78704 1.03187 1.02123 1.18590 0.92976 0.78024 0.94716 0.97162 1.21884 1.00139 1.01732 0.95363 1.21565 1.29953 0.99248 1.07001 0.92290 1.25753 0.94800 0.98268 0.99696 1.70019 1.33700 1.14990 1.36916 0.85430 0.78879 0.77624 0.78935 1.20792 1.20340 1.18631 1.67489 1.11603 1.27886 1.09826 1.23309 1.01740 0.86398 1.02967 0.85752 0.91342 0.91264 0.81294 0.81302 0.84281 0.82830 0.92704 0.90779 0.89041 0.96090 0.93248 0.91163 0.92570 0.79938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.19 16 2 O -0.32 -4.49 10.50 -90.93 -0.95 -5.45 16 3 C 0.08 1.38 6.72 22.75 0.15 1.54 16 4 C -0.11 -1.82 10.11 22.52 0.23 -1.59 16 5 C -0.10 -1.86 9.83 22.64 0.22 -1.64 16 6 C 0.08 2.08 6.70 41.70 0.28 2.36 16 7 C -0.03 -0.85 9.44 23.84 0.22 -0.62 16 8 C -0.17 -5.98 8.74 23.63 0.21 -5.77 16 9 C 0.52 23.65 7.61 86.39 0.66 24.31 16 10 O -0.61 -32.63 15.56 -4.29 -0.07 -32.70 16 11 N -0.59 -27.26 2.75 -831.74 -2.29 -29.55 16 12 C 0.08 2.91 9.39 127.77 1.20 4.11 16 13 C 0.26 14.16 2.64 44.25 0.12 14.28 16 14 H 0.01 0.67 6.90 -2.39 -0.02 0.66 16 15 C -0.13 -6.66 8.95 71.98 0.64 -6.01 16 16 C -0.54 -30.47 8.37 25.60 0.21 -30.26 16 17 H 0.06 3.25 7.64 -2.91 -0.02 3.23 16 18 C 0.01 0.81 5.30 84.66 0.45 1.25 16 19 N -0.92 -54.04 11.32 21.45 0.24 -53.80 16 20 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 24 N -0.46 -11.27 9.31 -184.84 -1.72 -12.99 16 25 C 0.02 0.31 10.21 84.97 0.87 1.18 16 26 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 27 H 0.07 0.35 7.67 -2.38 -0.02 0.33 16 28 H 0.07 0.34 7.68 -2.39 -0.02 0.32 16 29 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.14 4.19 7.52 -2.91 -0.02 4.17 16 32 H 0.15 4.64 5.56 -2.91 -0.02 4.63 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 2.54 6.43 -2.39 -0.02 2.52 16 35 H 0.09 2.53 6.09 -2.39 -0.01 2.51 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 2.23 6.66 -2.38 -0.02 2.22 16 38 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 39 H 0.27 14.73 8.31 -92.71 -0.77 13.95 16 40 H 0.18 2.26 6.31 -2.91 -0.02 2.24 16 Total: -1.00 -75.62 337.50 4.87 -70.75 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.05 Total: 13.32 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 6.58 Total: 4.33 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -3.77 Total: -96.35 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -1.02 Total: -38.15 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -75.62 4.87 -70.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492449179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.499 kcal (2) G-P(sol) polarization free energy of solvation -75.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds