Wall clock time and date at job start Tue Mar 31 2020 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47245 * 2 1 4 4 C 1.52997 * 109.47182 * 239.99111 * 2 1 3 5 5 N 1.46900 * 109.47161 * 185.00498 * 4 2 1 6 6 N 1.46502 * 109.46469 * 119.99524 * 2 1 3 7 7 C 1.34779 * 120.00004 * 274.99653 * 6 2 1 8 8 O 1.21718 * 119.99908 * 0.02562 * 7 6 2 9 9 C 1.46255 * 119.99865 * 180.02562 * 7 6 2 10 10 C 1.35018 * 120.00033 * 180.02562 * 9 7 6 11 11 C 1.46960 * 120.00382 * 179.97438 * 10 9 7 12 12 C 1.40026 * 120.10267 * 179.97438 * 11 10 9 13 13 C 1.37594 * 119.89660 * 179.97438 * 12 11 10 14 14 C 1.39178 * 120.10071 * 0.27233 * 13 12 11 15 15 O 1.35579 * 119.89553 * 179.70771 * 14 13 12 16 16 C 1.34781 * 117.00320 * 354.44312 * 15 14 13 17 17 H 1.08005 * 119.99725 * 5.05569 * 16 15 14 18 18 C 1.38715 * 120.00342 * 185.05925 * 16 15 14 19 19 N 1.31503 * 120.00014 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99770 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46728 * 89.99874 * 20 18 16 22 22 H 1.48502 * 109.47119 * 210.00016 * 20 18 16 23 23 H 1.48502 * 109.47082 * 330.00327 * 20 18 16 24 24 C 1.39173 * 120.20477 * 359.44770 * 14 13 12 25 25 C 1.37597 * 120.09926 * 0.55723 * 24 14 13 26 26 H 1.08995 * 109.47245 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47467 * 300.00742 * 1 2 3 28 28 H 1.09005 * 109.46742 * 60.00213 * 1 2 3 29 29 H 1.08998 * 109.47707 * 305.00654 * 4 2 1 30 30 H 1.08999 * 109.46848 * 65.00570 * 4 2 1 31 31 H 1.00894 * 111.00146 * 56.04624 * 5 4 2 32 32 H 1.00895 * 111.00154 * 180.02562 * 5 4 2 33 33 H 0.97004 * 120.00347 * 95.00473 * 6 2 1 34 34 H 1.08003 * 120.00048 * 359.97438 * 9 7 6 35 35 H 1.08003 * 119.99918 * 359.97438 * 10 9 7 36 36 H 1.08002 * 120.05214 * 359.95709 * 12 11 10 37 37 H 1.08001 * 119.95149 * 180.02562 * 13 12 11 38 38 H 0.97001 * 119.99590 * 179.97438 * 19 18 16 39 39 H 1.08004 * 119.95204 * 180.27325 * 24 14 13 40 40 H 1.08000 * 120.05069 * 179.74232 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5041 -0.8269 -1.1902 6 7 2.0182 -0.6905 1.1963 7 6 2.1469 -0.0181 2.3572 8 8 1.8571 1.1628 2.4118 9 6 2.6348 -0.7074 3.5513 10 6 2.7633 -0.0338 4.7145 11 6 3.2530 -0.7265 5.9145 12 6 3.3875 -0.0299 7.1217 13 6 3.8459 -0.6827 8.2428 14 6 4.1810 -2.0320 8.1768 15 8 4.6379 -2.6697 9.2826 16 6 4.8528 -1.9157 10.3789 17 1 4.5846 -0.8695 10.3759 18 6 5.4185 -2.4833 11.5112 19 7 5.6286 -1.7475 12.5807 20 14 5.8818 -4.2930 11.5167 21 1 7.2810 -4.4471 11.0435 22 1 5.7637 -4.8300 12.8961 23 1 4.9691 -5.0404 10.6146 24 6 4.0435 -2.7298 6.9806 25 6 3.5859 -2.0853 5.8543 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6054 -1.7199 -1.2950 30 1 1.7517 -0.1585 -2.1369 31 1 3.7995 -1.2885 -0.3431 32 1 3.8656 -1.2997 -2.0049 33 1 2.2489 -1.6317 1.1529 34 1 2.8916 -1.7553 3.5029 35 1 2.5061 1.0140 4.7630 36 1 3.1321 1.0182 7.1727 37 1 3.9496 -0.1464 9.1745 38 1 6.0238 -2.1446 13.3725 39 1 4.3005 -3.7779 6.9351 40 1 3.4834 -2.6266 4.9254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493677694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:33 Heat of formation + Delta-G solvation = -28.179566 kcal Electronic energy + Delta-G solvation = -21427.224955 eV Core-core repulsion = 18014.732605 eV Total energy + Delta-G solvation = -3412.492351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.84609 -39.31339 -37.21496 -36.67375 -33.29989 -33.21035 -32.47262 -30.90316 -30.52382 -28.33224 -25.71900 -25.32578 -23.55404 -22.31367 -21.36726 -20.61962 -19.37913 -18.11799 -17.45514 -17.24094 -16.33733 -16.01301 -15.41368 -15.03074 -14.85511 -14.58963 -14.19990 -14.05263 -13.98495 -13.69298 -13.38664 -12.86448 -12.70696 -12.63083 -12.62426 -12.40425 -12.04071 -11.86390 -11.79712 -11.32265 -11.18459 -11.02616 -10.76764 -10.28136 -9.80346 -9.65508 -9.55158 -9.22328 -9.09815 -8.91751 -8.47402 -7.24485 -6.60619 -4.24427 0.99522 2.03014 2.48241 3.11422 3.15186 3.15296 3.28419 3.53497 4.07197 4.08413 4.42593 4.50886 4.62722 4.78339 4.93706 4.95054 5.04012 5.16967 5.19744 5.28669 5.41392 5.42652 5.52618 5.59690 5.80294 5.93119 5.93978 6.02208 6.29003 6.34957 6.46197 6.52855 6.67218 6.67453 6.92493 6.98351 7.08623 7.16109 7.41458 7.49799 7.62566 7.83891 8.32240 8.72692 9.32892 10.45662 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037784 B = 0.002427 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.884892 B =11536.194110 C =11984.522146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.094 0.906 4 C 0.055 3.945 5 N -0.850 5.850 6 N -0.729 5.729 7 C 0.558 3.442 8 O -0.555 6.555 9 C -0.278 4.278 10 C 0.035 3.965 11 C -0.189 4.189 12 C -0.037 4.037 13 C -0.230 4.230 14 C 0.173 3.827 15 O -0.203 6.203 16 C -0.392 4.392 17 H 0.111 0.889 18 C 0.066 3.934 19 N -0.867 5.867 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.258 1.258 24 C -0.200 4.200 25 C -0.045 4.045 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.085 0.915 31 H 0.343 0.657 32 H 0.343 0.657 33 H 0.394 0.606 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.283 0.717 39 H 0.121 0.879 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 -1.899 -22.343 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.113 0.887 4 C -0.077 4.077 5 N -0.380 5.380 6 N -0.380 5.380 7 C 0.350 3.650 8 O -0.435 6.435 9 C -0.299 4.299 10 C 0.016 3.984 11 C -0.190 4.190 12 C -0.055 4.055 13 C -0.249 4.249 14 C 0.119 3.881 15 O -0.105 6.105 16 C -0.467 4.467 17 H 0.128 0.872 18 C -0.140 4.140 19 N -0.503 5.503 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.182 1.182 24 C -0.219 4.219 25 C -0.064 4.064 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.103 0.897 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.228 0.772 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.093 0.907 39 H 0.139 0.861 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.391 -0.489 -21.999 22.914 hybrid contribution 0.175 -2.164 0.199 2.180 sum -6.217 -2.653 -21.800 22.823 Atomic orbital electron populations 1.22166 0.95185 1.02057 1.02834 1.20963 0.93610 0.98332 0.83368 0.88750 1.22100 0.88425 0.98909 0.98237 1.58597 1.09715 1.61894 1.07834 1.45874 1.68760 1.13550 1.09839 1.18372 0.76812 0.86456 0.83390 1.90779 1.51308 1.16046 1.85334 1.22465 1.13382 1.00879 0.93213 1.22303 0.86819 0.98647 0.90670 1.18533 1.12521 0.94376 0.93598 1.21048 0.94455 0.98569 0.91441 1.21224 1.08412 0.95136 1.00103 1.19363 0.91267 0.90859 0.86624 1.83504 1.71530 1.37370 1.18131 1.20878 1.41913 0.95573 0.88310 0.87188 1.24540 0.95261 1.00326 0.93825 1.69616 1.40514 1.36952 1.03176 0.86156 0.79836 0.82962 0.77860 1.19635 1.20519 1.18212 1.20138 1.10343 1.00358 0.91050 1.20873 0.95379 0.93261 0.96853 0.92613 0.91583 0.91688 0.95094 0.89681 0.84364 0.84483 0.77201 0.85978 0.85769 0.86507 0.84497 0.90654 0.86146 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.48 37.16 0.35 -0.98 16 2 C 0.14 1.27 2.88 -67.93 -0.20 1.08 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 4 C 0.05 0.35 6.40 -3.83 -0.02 0.33 16 5 N -0.85 -5.83 9.61 -10.37 -0.10 -5.93 16 6 N -0.73 -6.94 4.35 -55.25 -0.24 -7.18 16 7 C 0.56 7.47 7.70 -13.04 -0.10 7.37 16 8 O -0.55 -9.50 15.89 5.17 0.08 -9.42 16 9 C -0.28 -3.58 9.41 -37.51 -0.35 -3.93 16 10 C 0.04 0.52 9.45 -37.19 -0.35 0.17 16 11 C -0.19 -3.08 5.87 -105.03 -0.62 -3.70 16 12 C -0.04 -0.64 9.78 -39.15 -0.38 -1.02 16 13 C -0.23 -4.69 9.14 -39.47 -0.36 -5.05 16 14 C 0.17 3.77 6.66 -38.89 -0.26 3.51 16 15 O -0.20 -5.05 8.57 0.71 0.01 -5.04 16 16 C -0.39 -10.49 9.94 30.91 0.31 -10.18 16 17 H 0.11 3.00 5.41 -52.48 -0.28 2.72 16 18 C 0.07 1.76 5.49 -17.52 -0.10 1.66 16 19 N -0.87 -23.93 13.96 55.48 0.77 -23.15 16 20 Si 0.91 20.56 28.62 -169.99 -4.86 15.69 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 24 C -0.20 -3.67 9.97 -39.47 -0.39 -4.07 16 25 C -0.05 -0.72 9.40 -39.15 -0.37 -1.09 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.34 2.27 7.84 -39.30 -0.31 1.96 16 32 H 0.34 1.69 9.08 -39.29 -0.36 1.34 16 33 H 0.39 2.71 8.13 -40.82 -0.33 2.38 16 34 H 0.12 1.30 6.07 -52.48 -0.32 0.98 16 35 H 0.12 1.84 7.52 -52.48 -0.39 1.44 16 36 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.14 2.92 5.62 -52.49 -0.29 2.63 16 38 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 40 H 0.12 1.49 6.16 -52.49 -0.32 1.17 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -30.31 342.46 -7.12 -37.43 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.10 Total: 8.35 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.84 Total: -15.92 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.43 Total: -36.26 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.46 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.86 Total: 15.69 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.31 -7.12 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493677694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.251 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds