Wall clock time and date at job start Tue Mar 31 2020 06:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47245 * 2 1 4 4 C 1.52997 * 109.47182 * 239.99111 * 2 1 3 5 5 N 1.46900 * 109.47161 * 185.00498 * 4 2 1 6 6 N 1.46502 * 109.46469 * 119.99524 * 2 1 3 7 7 C 1.34779 * 120.00004 * 274.99653 * 6 2 1 8 8 O 1.21718 * 119.99908 * 0.02562 * 7 6 2 9 9 C 1.46255 * 119.99865 * 180.02562 * 7 6 2 10 10 C 1.35018 * 120.00033 * 180.02562 * 9 7 6 11 11 C 1.46960 * 120.00382 * 179.97438 * 10 9 7 12 12 C 1.40026 * 120.10267 * 179.97438 * 11 10 9 13 13 C 1.37594 * 119.89660 * 179.97438 * 12 11 10 14 14 C 1.39178 * 120.10071 * 0.27233 * 13 12 11 15 15 O 1.35579 * 119.89553 * 179.70771 * 14 13 12 16 16 C 1.34781 * 117.00320 * 354.44312 * 15 14 13 17 17 H 1.08005 * 119.99725 * 5.05569 * 16 15 14 18 18 C 1.38715 * 120.00342 * 185.05925 * 16 15 14 19 19 N 1.31503 * 120.00014 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99770 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46728 * 89.99874 * 20 18 16 22 22 H 1.48502 * 109.47119 * 210.00016 * 20 18 16 23 23 H 1.48502 * 109.47082 * 330.00327 * 20 18 16 24 24 C 1.39173 * 120.20477 * 359.44770 * 14 13 12 25 25 C 1.37597 * 120.09926 * 0.55723 * 24 14 13 26 26 H 1.08995 * 109.47245 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47467 * 300.00742 * 1 2 3 28 28 H 1.09005 * 109.46742 * 60.00213 * 1 2 3 29 29 H 1.08998 * 109.47707 * 305.00654 * 4 2 1 30 30 H 1.08999 * 109.46848 * 65.00570 * 4 2 1 31 31 H 1.00894 * 111.00146 * 56.04624 * 5 4 2 32 32 H 1.00895 * 111.00154 * 180.02562 * 5 4 2 33 33 H 0.97004 * 120.00347 * 95.00473 * 6 2 1 34 34 H 1.08003 * 120.00048 * 359.97438 * 9 7 6 35 35 H 1.08003 * 119.99918 * 359.97438 * 10 9 7 36 36 H 1.08002 * 120.05214 * 359.95709 * 12 11 10 37 37 H 1.08001 * 119.95149 * 180.02562 * 13 12 11 38 38 H 0.97001 * 119.99590 * 179.97438 * 19 18 16 39 39 H 1.08004 * 119.95204 * 180.27325 * 24 14 13 40 40 H 1.08000 * 120.05069 * 179.74232 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5041 -0.8269 -1.1902 6 7 2.0182 -0.6905 1.1963 7 6 2.1469 -0.0181 2.3572 8 8 1.8571 1.1628 2.4118 9 6 2.6348 -0.7074 3.5513 10 6 2.7633 -0.0338 4.7145 11 6 3.2530 -0.7265 5.9145 12 6 3.3875 -0.0299 7.1217 13 6 3.8459 -0.6827 8.2428 14 6 4.1810 -2.0320 8.1768 15 8 4.6379 -2.6697 9.2826 16 6 4.8528 -1.9157 10.3789 17 1 4.5846 -0.8695 10.3759 18 6 5.4185 -2.4833 11.5112 19 7 5.6286 -1.7475 12.5807 20 14 5.8818 -4.2930 11.5167 21 1 7.2810 -4.4471 11.0435 22 1 5.7637 -4.8300 12.8961 23 1 4.9691 -5.0404 10.6146 24 6 4.0435 -2.7298 6.9806 25 6 3.5859 -2.0853 5.8543 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6054 -1.7199 -1.2950 30 1 1.7517 -0.1585 -2.1369 31 1 3.7995 -1.2885 -0.3431 32 1 3.8656 -1.2997 -2.0049 33 1 2.2489 -1.6317 1.1529 34 1 2.8916 -1.7553 3.5029 35 1 2.5061 1.0140 4.7630 36 1 3.1321 1.0182 7.1727 37 1 3.9496 -0.1464 9.1745 38 1 6.0238 -2.1446 13.3725 39 1 4.3005 -3.7779 6.9351 40 1 3.4834 -2.6266 4.9254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493677694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:32 Heat of formation + Delta-G solvation = -50.023172 kcal Electronic energy + Delta-G solvation = -21428.172165 eV Core-core repulsion = 18014.732605 eV Total energy + Delta-G solvation = -3413.439561 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03405 -40.73920 -38.65460 -37.59118 -34.76077 -34.22714 -33.95518 -32.01568 -31.69292 -29.70389 -27.45085 -26.00300 -24.76067 -23.79719 -22.50041 -21.55454 -20.69226 -19.69641 -19.14505 -18.37669 -17.23075 -16.73890 -16.65516 -16.31352 -15.94261 -15.79206 -15.60086 -15.55680 -15.40804 -15.00718 -14.39799 -14.25014 -14.06305 -14.01657 -13.47466 -13.35135 -13.21567 -13.17336 -12.73335 -12.70547 -12.60877 -12.34950 -11.99585 -11.93596 -11.30754 -11.15362 -10.93857 -10.66982 -10.08933 -9.91669 -9.58809 -8.73688 -8.53636 -6.25535 -0.27053 0.55195 1.11801 1.32634 1.37706 1.52553 2.26302 2.27552 2.38326 2.80585 3.00471 3.15601 3.53392 3.81014 3.92186 3.95568 4.04882 4.20158 4.29798 4.34115 4.39869 4.46663 4.63308 4.63971 4.76735 4.80233 4.84095 5.04652 5.13058 5.22093 5.26532 5.28800 5.39894 5.55593 5.60602 5.70579 5.80268 5.83678 6.14648 6.22312 6.57056 6.63060 6.79468 7.32704 7.50651 8.57243 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037784 B = 0.002427 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.884892 B =11536.194110 C =11984.522146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.063 0.937 4 C 0.062 3.938 5 N -0.865 5.865 6 N -0.707 5.707 7 C 0.550 3.450 8 O -0.596 6.596 9 C -0.237 4.237 10 C 0.008 3.992 11 C -0.159 4.159 12 C -0.047 4.047 13 C -0.244 4.244 14 C 0.136 3.864 15 O -0.233 6.233 16 C -0.404 4.404 17 H 0.083 0.917 18 C 0.011 3.989 19 N -0.918 5.918 20 Si 0.972 3.028 21 H -0.265 1.265 22 H -0.268 1.268 23 H -0.259 1.259 24 C -0.193 4.193 25 C -0.039 4.039 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.344 0.656 32 H 0.354 0.646 33 H 0.412 0.588 34 H 0.158 0.842 35 H 0.119 0.881 36 H 0.137 0.863 37 H 0.113 0.887 38 H 0.286 0.714 39 H 0.140 0.860 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 -4.077 -26.945 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.081 0.919 4 C -0.069 4.069 5 N -0.397 5.397 6 N -0.359 5.359 7 C 0.341 3.659 8 O -0.479 6.479 9 C -0.257 4.257 10 C -0.012 4.012 11 C -0.160 4.160 12 C -0.065 4.065 13 C -0.263 4.263 14 C 0.085 3.915 15 O -0.139 6.139 16 C -0.480 4.480 17 H 0.101 0.899 18 C -0.188 4.188 19 N -0.557 5.557 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.193 1.193 23 H -0.183 1.183 24 C -0.212 4.212 25 C -0.057 4.057 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.249 0.751 34 H 0.176 0.824 35 H 0.137 0.863 36 H 0.155 0.845 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.158 0.842 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.217 -2.687 -26.694 27.783 hybrid contribution 0.200 -1.276 0.985 1.625 sum -7.017 -3.963 -25.709 26.942 Atomic orbital electron populations 1.22113 0.94388 1.02939 1.02306 1.21036 0.94217 0.97130 0.84127 0.91886 1.22035 0.88296 0.99738 0.96808 1.58588 1.10063 1.62514 1.08544 1.45743 1.66932 1.14293 1.08925 1.18566 0.76777 0.86044 0.84544 1.90784 1.53017 1.18004 1.86045 1.22817 1.08899 1.02049 0.91936 1.22156 0.89517 0.98816 0.90735 1.18820 1.09154 0.94669 0.93378 1.21285 0.94377 0.99751 0.91122 1.21219 1.09455 0.95255 1.00353 1.19944 0.92393 0.91810 0.87312 1.83460 1.74850 1.37173 1.18439 1.20754 1.42583 0.94941 0.89706 0.89919 1.25347 0.95447 1.04621 0.93397 1.69706 1.43195 1.38767 1.04064 0.85194 0.79489 0.77745 0.78172 1.18949 1.19307 1.18283 1.20501 1.09207 1.01303 0.90198 1.21355 0.93597 0.92956 0.97767 0.90930 0.94384 0.90053 0.92899 0.88894 0.84247 0.83162 0.75081 0.82434 0.86326 0.84545 0.86961 0.90385 0.84223 0.81460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 71.98 0.68 -1.46 16 2 C 0.14 2.10 2.88 44.99 0.13 2.23 16 3 H 0.06 1.39 7.58 -2.39 -0.02 1.37 16 4 C 0.06 0.56 6.40 86.30 0.55 1.11 16 5 N -0.86 -8.82 9.61 -186.72 -1.80 -10.61 16 6 N -0.71 -10.70 4.35 -446.92 -1.94 -12.64 16 7 C 0.55 12.87 7.70 86.33 0.66 13.54 16 8 O -0.60 -19.47 15.89 -4.41 -0.07 -19.54 16 9 C -0.24 -4.93 9.41 23.61 0.22 -4.71 16 10 C 0.01 0.20 9.45 23.82 0.23 0.42 16 11 C -0.16 -4.72 5.87 -20.13 -0.12 -4.84 16 12 C -0.05 -1.63 9.78 22.55 0.22 -1.41 16 13 C -0.24 -10.39 9.14 22.34 0.20 -10.18 16 14 C 0.14 6.03 6.66 22.72 0.15 6.18 16 15 O -0.23 -12.10 8.57 -20.36 -0.17 -12.28 16 16 C -0.40 -23.11 9.94 67.93 0.68 -22.44 16 17 H 0.08 4.98 5.41 -2.91 -0.02 4.96 16 18 C 0.01 0.64 5.49 84.86 0.47 1.10 16 19 N -0.92 -53.68 13.96 21.62 0.30 -53.38 16 20 Si 0.97 43.75 28.62 68.60 1.96 45.71 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 24 C -0.19 -6.67 9.97 22.34 0.22 -6.45 16 25 C -0.04 -1.07 9.40 22.55 0.21 -0.86 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.34 3.19 7.84 -89.70 -0.70 2.49 16 32 H 0.35 2.26 9.08 -89.70 -0.81 1.44 16 33 H 0.41 3.45 8.13 -92.71 -0.75 2.70 16 34 H 0.16 2.16 6.07 -2.91 -0.02 2.14 16 35 H 0.12 3.29 7.52 -2.91 -0.02 3.26 16 36 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.11 5.29 5.62 -2.91 -0.02 5.27 16 38 H 0.29 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 40 H 0.17 2.97 6.16 -2.91 -0.02 2.95 16 Total: -1.00 -71.61 342.46 1.62 -69.99 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -1.17 Total: 20.52 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 4.51 Total: -27.77 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -3.44 Total: -76.64 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.24 Total: -31.81 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.96 Total: 45.71 kcal Total: -71.61 1.62 -69.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493677694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.966 kcal (2) G-P(sol) polarization free energy of solvation -71.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds