Wall clock time and date at job start Tue Mar 31 2020 06:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46901 * 2 1 4 4 C 1.50699 * 109.47317 * 119.99433 * 2 1 3 5 5 C 1.38305 * 119.96020 * 49.66010 * 4 2 1 6 6 C 1.38254 * 120.13938 * 179.72066 * 5 4 2 7 7 C 1.38142 * 120.07287 * 359.97438 * 6 5 4 8 8 C 1.38847 * 119.92303 * 0.02562 * 7 6 5 9 9 N 1.39955 * 120.06811 * 179.97438 * 8 7 6 10 10 C 1.47095 * 125.55684 * 0.02562 * 9 8 7 11 11 C 1.54091 * 103.77512 * 179.97438 * 10 9 8 12 12 O 1.45694 * 104.01070 * 359.97438 * 11 10 9 13 13 C 1.33781 * 109.47582 * 359.77238 * 12 11 10 14 14 O 1.21511 * 123.07339 * 180.23413 * 13 12 11 15 15 C 1.38085 * 119.96768 * 229.38377 * 4 2 1 16 16 N 1.46500 * 109.47342 * 239.99964 * 2 1 3 17 17 C 1.46503 * 120.00068 * 305.40112 * 16 2 1 18 18 C 1.36934 * 120.00083 * 125.40169 * 16 2 1 19 19 H 1.08004 * 120.00030 * 327.09170 * 18 16 2 20 20 C 1.38806 * 120.00112 * 147.09871 * 18 16 2 21 21 N 1.31620 * 120.00555 * 142.86393 * 20 18 16 22 22 Si 1.86809 * 119.99853 * 322.85675 * 20 18 16 23 23 H 1.48497 * 109.46733 * 91.07245 * 22 20 18 24 24 H 1.48502 * 109.47218 * 211.07133 * 22 20 18 25 25 H 1.48495 * 109.46941 * 331.07247 * 22 20 18 26 26 H 1.09001 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47000 * 300.00104 * 1 2 3 28 28 H 1.08996 * 109.46963 * 60.00896 * 1 2 3 29 29 H 1.08004 * 119.93388 * 359.74083 * 5 4 2 30 30 H 1.08002 * 119.96745 * 180.02562 * 6 5 4 31 31 H 1.07998 * 120.04281 * 179.97438 * 7 6 5 32 32 H 1.08998 * 110.56321 * 298.53171 * 10 9 8 33 33 H 1.08998 * 110.56854 * 61.23842 * 10 9 8 34 34 H 1.09002 * 110.51786 * 118.63585 * 11 10 9 35 35 H 1.09005 * 110.52087 * 241.36385 * 11 10 9 36 36 H 1.07995 * 120.03629 * 0.29523 * 15 4 2 37 37 H 1.09003 * 109.46770 * 84.14557 * 17 16 2 38 38 H 1.08995 * 109.47250 * 204.15064 * 17 16 2 39 39 H 1.09000 * 109.46549 * 324.15102 * 17 16 2 40 40 H 0.97000 * 120.00666 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.5314 -1.9561 1.5618 6 6 1.9938 -2.6135 2.6867 7 6 2.9587 -2.0278 3.4832 8 6 3.4636 -0.7772 3.1532 9 7 4.4408 -0.1808 3.9582 10 6 5.0193 -0.7667 5.1772 11 6 6.0278 0.2969 5.6526 12 8 5.9135 1.3590 4.6619 13 6 5.0067 1.0142 3.7408 14 8 4.7196 1.7217 2.7955 15 6 2.9965 -0.1191 2.0228 16 7 2.0184 -0.6906 -1.1961 17 6 1.5697 -2.0540 -1.4893 18 6 2.8944 -0.0617 -2.0402 19 1 2.8370 1.0078 -2.1789 20 6 3.8559 -0.7989 -2.7175 21 7 4.1814 -0.4792 -3.9521 22 14 4.6881 -2.2447 -1.8768 23 1 3.9260 -3.4874 -2.1598 24 1 6.0739 -2.3858 -2.3914 25 1 4.7258 -2.0101 -0.4110 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 0.7775 -2.4165 0.9404 30 1 1.6009 -3.5865 2.9426 31 1 3.3193 -2.5417 4.3620 32 1 4.2468 -0.9250 5.9297 33 1 5.5267 -1.7038 4.9480 34 1 5.7563 0.6655 6.6418 35 1 7.0385 -0.1112 5.6600 36 1 3.3872 0.8538 1.7637 37 1 0.6139 -2.0174 -2.0120 38 1 2.3083 -2.5526 -2.1170 39 1 1.4530 -2.6064 -0.5570 40 1 4.8531 -0.9945 -4.4256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496251648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:22 Heat of formation + Delta-G solvation = 3.144350 kcal Electronic energy + Delta-G solvation = -23740.317444 eV Core-core repulsion = 20329.183400 eV Total energy + Delta-G solvation = -3411.134044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.95196 -39.23901 -37.36507 -36.58695 -35.07103 -32.47622 -30.93663 -30.59952 -29.16582 -28.55988 -26.19994 -24.53707 -23.65485 -23.48267 -21.73283 -21.03496 -19.40741 -17.62543 -17.53890 -17.10324 -16.79694 -16.22601 -15.23837 -15.15796 -14.78066 -14.38192 -14.23257 -14.10098 -13.97638 -13.61034 -13.18156 -12.89583 -12.70791 -12.35465 -12.20435 -12.12243 -11.93387 -11.65138 -11.58351 -10.98980 -10.93622 -10.57965 -10.40144 -10.24776 -10.22420 -9.97828 -9.89721 -9.59910 -8.50563 -8.27135 -7.78033 -6.86666 -6.06856 -3.24232 1.56352 1.75873 2.19544 2.72707 3.19089 3.37470 3.52300 3.64895 3.77898 4.11132 4.34089 4.38821 4.59138 4.84053 4.94923 5.05486 5.08898 5.16276 5.28841 5.38287 5.55247 5.57941 5.75130 5.94027 6.01932 6.11201 6.28235 6.37556 6.41988 6.52742 6.61664 6.65884 6.67165 6.78688 6.89481 6.96101 7.21875 7.24696 7.43596 7.92404 8.01804 8.37396 9.01331 9.74252 10.15503 11.08385 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016421 B = 0.005782 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.720404 B = 4841.064224 C = 5374.298008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.196 3.804 3 H 0.080 0.920 4 C -0.046 4.046 5 C -0.138 4.138 6 C -0.098 4.098 7 C -0.173 4.173 8 C 0.170 3.830 9 N -0.568 5.568 10 C 0.060 3.940 11 C 0.042 3.958 12 O -0.324 6.324 13 C 0.639 3.361 14 O -0.490 6.490 15 C -0.141 4.141 16 N -0.588 5.588 17 C 0.104 3.896 18 C -0.272 4.272 19 H 0.082 0.918 20 C 0.048 3.952 21 N -0.874 5.874 22 Si 0.845 3.155 23 H -0.285 1.285 24 H -0.299 1.299 25 H -0.269 1.269 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.154 0.846 37 H 0.016 0.984 38 H 0.051 0.949 39 H 0.034 0.966 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 -4.359 21.666 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.090 3.910 3 H 0.098 0.902 4 C -0.050 4.050 5 C -0.158 4.158 6 C -0.117 4.117 7 C -0.194 4.194 8 C 0.079 3.921 9 N -0.305 5.305 10 C -0.063 4.063 11 C -0.033 4.033 12 O -0.234 6.234 13 C 0.393 3.607 14 O -0.373 6.373 15 C -0.161 4.161 16 N -0.309 5.309 17 C -0.040 4.040 18 C -0.400 4.400 19 H 0.099 0.901 20 C -0.155 4.155 21 N -0.512 5.512 22 Si 0.673 3.327 23 H -0.212 1.212 24 H -0.227 1.227 25 H -0.194 1.194 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.172 0.828 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.213 -3.717 21.000 21.361 hybrid contribution 0.946 -1.319 0.688 1.763 sum -0.267 -5.036 21.688 22.267 Atomic orbital electron populations 1.22179 0.96918 1.01226 1.00889 1.19660 0.92505 0.95987 0.82882 0.90192 1.20900 0.94286 0.95055 0.94750 1.21180 1.01924 0.95566 0.97089 1.20812 0.96650 0.99220 0.94969 1.20445 1.01965 0.94539 1.02416 1.17401 0.89923 0.93101 0.91708 1.45340 1.39948 1.18748 1.26498 1.22909 0.97446 0.98421 0.87481 1.24310 1.01239 0.85379 0.92365 1.87329 1.56546 1.42560 1.36995 1.18487 0.78316 0.81389 0.82465 1.91026 1.63350 1.55168 1.27734 1.21500 0.98466 1.02761 0.93403 1.44333 1.51351 1.13932 1.21293 1.21472 0.98076 0.86418 0.98084 1.18771 1.09601 0.94386 1.17217 0.90086 1.25369 0.97392 0.97160 0.95532 1.70093 1.31757 1.41300 1.08087 0.87438 0.79419 0.83587 0.82288 1.21223 1.22668 1.19404 0.93141 0.93351 0.92208 0.85648 0.86150 0.86591 0.88353 0.88421 0.87286 0.87344 0.82830 0.96555 0.93010 0.94779 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.80 37.16 0.33 -2.30 16 2 C 0.20 4.09 3.02 -69.08 -0.21 3.88 16 3 H 0.08 1.76 7.67 -51.93 -0.40 1.36 16 4 C -0.05 -0.90 4.99 -104.65 -0.52 -1.42 16 5 C -0.14 -2.34 7.70 -39.55 -0.30 -2.65 16 6 C -0.10 -1.42 10.04 -39.61 -0.40 -1.81 16 7 C -0.17 -2.43 9.49 -39.39 -0.37 -2.80 16 8 C 0.17 2.84 6.63 -83.68 -0.56 2.28 16 9 N -0.57 -8.09 3.16 -118.27 -0.37 -8.47 16 10 C 0.06 0.47 6.49 -3.15 -0.02 0.45 16 11 C 0.04 0.28 8.23 37.73 0.31 0.59 16 12 O -0.32 -4.24 11.09 -37.86 -0.42 -4.66 16 13 C 0.64 10.60 8.77 53.71 0.47 11.07 16 14 O -0.49 -10.29 14.75 -19.12 -0.28 -10.57 16 15 C -0.14 -2.79 8.93 -39.40 -0.35 -3.14 16 16 N -0.59 -14.38 2.41 -174.81 -0.42 -14.80 16 17 C 0.10 2.33 8.43 59.85 0.50 2.84 16 18 C -0.27 -7.82 9.70 -15.06 -0.15 -7.97 16 19 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 20 C 0.05 1.42 4.95 -17.43 -0.09 1.33 16 21 N -0.87 -26.97 13.97 55.49 0.78 -26.20 16 22 Si 0.85 22.66 26.11 -169.99 -4.44 18.23 16 23 H -0.28 -7.34 6.48 56.52 0.37 -6.97 16 24 H -0.30 -8.11 7.11 56.52 0.40 -7.71 16 25 H -0.27 -7.43 7.11 56.52 0.40 -7.03 16 26 H 0.05 0.81 6.29 -51.93 -0.33 0.48 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.13 1.98 5.20 -52.48 -0.27 1.71 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.12 1.21 7.31 -52.49 -0.38 0.83 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.15 3.39 5.16 -52.49 -0.27 3.12 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 1.28 4.05 -51.93 -0.21 1.07 16 39 H 0.03 0.67 4.44 -51.93 -0.23 0.44 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -35.74 319.87 -6.76 -42.50 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.07 Total: -1.19 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.35 Total: 0.35 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.02 Total: -49.46 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.70 Total: -15.23 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.44 Total: 18.23 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.74 -6.76 -42.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496251648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.644 kcal (2) G-P(sol) polarization free energy of solvation -35.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds