Wall clock time and date at job start Tue Mar 31 2020 06:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46901 * 2 1 4 4 C 1.50699 * 109.47317 * 119.99433 * 2 1 3 5 5 C 1.38305 * 119.96020 * 49.66010 * 4 2 1 6 6 C 1.38254 * 120.13938 * 179.72066 * 5 4 2 7 7 C 1.38142 * 120.07287 * 359.97438 * 6 5 4 8 8 C 1.38847 * 119.92303 * 0.02562 * 7 6 5 9 9 N 1.39955 * 120.06811 * 179.97438 * 8 7 6 10 10 C 1.47095 * 125.55684 * 0.02562 * 9 8 7 11 11 C 1.54091 * 103.77512 * 179.97438 * 10 9 8 12 12 O 1.45694 * 104.01070 * 359.97438 * 11 10 9 13 13 C 1.33781 * 109.47582 * 359.77238 * 12 11 10 14 14 O 1.21511 * 123.07339 * 180.23413 * 13 12 11 15 15 C 1.38085 * 119.96768 * 229.38377 * 4 2 1 16 16 N 1.46500 * 109.47342 * 239.99964 * 2 1 3 17 17 C 1.46503 * 120.00068 * 305.40112 * 16 2 1 18 18 C 1.36934 * 120.00083 * 125.40169 * 16 2 1 19 19 H 1.08004 * 120.00030 * 327.09170 * 18 16 2 20 20 C 1.38806 * 120.00112 * 147.09871 * 18 16 2 21 21 N 1.31620 * 120.00555 * 142.86393 * 20 18 16 22 22 Si 1.86809 * 119.99853 * 322.85675 * 20 18 16 23 23 H 1.48497 * 109.46733 * 91.07245 * 22 20 18 24 24 H 1.48502 * 109.47218 * 211.07133 * 22 20 18 25 25 H 1.48495 * 109.46941 * 331.07247 * 22 20 18 26 26 H 1.09001 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47000 * 300.00104 * 1 2 3 28 28 H 1.08996 * 109.46963 * 60.00896 * 1 2 3 29 29 H 1.08004 * 119.93388 * 359.74083 * 5 4 2 30 30 H 1.08002 * 119.96745 * 180.02562 * 6 5 4 31 31 H 1.07998 * 120.04281 * 179.97438 * 7 6 5 32 32 H 1.08998 * 110.56321 * 298.53171 * 10 9 8 33 33 H 1.08998 * 110.56854 * 61.23842 * 10 9 8 34 34 H 1.09002 * 110.51786 * 118.63585 * 11 10 9 35 35 H 1.09005 * 110.52087 * 241.36385 * 11 10 9 36 36 H 1.07995 * 120.03629 * 0.29523 * 15 4 2 37 37 H 1.09003 * 109.46770 * 84.14557 * 17 16 2 38 38 H 1.08995 * 109.47250 * 204.15064 * 17 16 2 39 39 H 1.09000 * 109.46549 * 324.15102 * 17 16 2 40 40 H 0.97000 * 120.00666 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.5314 -1.9561 1.5618 6 6 1.9938 -2.6135 2.6867 7 6 2.9587 -2.0278 3.4832 8 6 3.4636 -0.7772 3.1532 9 7 4.4408 -0.1808 3.9582 10 6 5.0193 -0.7667 5.1772 11 6 6.0278 0.2969 5.6526 12 8 5.9135 1.3590 4.6619 13 6 5.0067 1.0142 3.7408 14 8 4.7196 1.7217 2.7955 15 6 2.9965 -0.1191 2.0228 16 7 2.0184 -0.6906 -1.1961 17 6 1.5697 -2.0540 -1.4893 18 6 2.8944 -0.0617 -2.0402 19 1 2.8370 1.0078 -2.1789 20 6 3.8559 -0.7989 -2.7175 21 7 4.1814 -0.4792 -3.9521 22 14 4.6881 -2.2447 -1.8768 23 1 3.9260 -3.4874 -2.1598 24 1 6.0739 -2.3858 -2.3914 25 1 4.7258 -2.0101 -0.4110 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 0.7775 -2.4165 0.9404 30 1 1.6009 -3.5865 2.9426 31 1 3.3193 -2.5417 4.3620 32 1 4.2468 -0.9250 5.9297 33 1 5.5267 -1.7038 4.9480 34 1 5.7563 0.6655 6.6418 35 1 7.0385 -0.1112 5.6600 36 1 3.3872 0.8538 1.7637 37 1 0.6139 -2.0174 -2.0120 38 1 2.3083 -2.5526 -2.1170 39 1 1.4530 -2.6064 -0.5570 40 1 4.8531 -0.9945 -4.4256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496251648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:22 Heat of formation + Delta-G solvation = -21.698577 kcal Electronic energy + Delta-G solvation = -23741.394714 eV Core-core repulsion = 20329.183400 eV Total energy + Delta-G solvation = -3412.211314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.97629 -40.53454 -38.62562 -38.10679 -36.35723 -34.39528 -32.44280 -31.84251 -30.27973 -29.85901 -28.06603 -25.79795 -25.01349 -24.74425 -23.15284 -22.25019 -20.80601 -18.99266 -18.73298 -18.51910 -18.11300 -17.47958 -17.15439 -16.44233 -16.08945 -15.77698 -15.30988 -15.22075 -15.11565 -14.85253 -14.69917 -14.44778 -14.31356 -14.04307 -13.65921 -13.41459 -13.29512 -12.97679 -12.88005 -12.72648 -12.46721 -12.16265 -12.03565 -11.87865 -11.80664 -11.57601 -11.28219 -11.17625 -10.57601 -9.71043 -8.98281 -8.85564 -8.33339 -5.47416 0.29973 0.48591 1.17702 1.22805 1.34001 1.48198 1.53106 2.37009 2.42376 2.84461 2.90992 3.21291 3.45092 3.55105 3.90786 3.96748 4.07403 4.22489 4.28921 4.40445 4.45464 4.51040 4.58352 4.64512 4.66256 4.70655 4.77279 4.90144 4.97550 5.07236 5.12423 5.22043 5.32259 5.39109 5.41598 5.60594 5.79775 5.89865 6.09071 6.10559 6.23378 6.74095 6.94181 7.61779 8.03136 8.87141 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016421 B = 0.005782 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.720404 B = 4841.064224 C = 5374.298008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.193 3.807 3 H 0.042 0.958 4 C -0.066 4.066 5 C -0.147 4.147 6 C -0.087 4.087 7 C -0.152 4.152 8 C 0.162 3.838 9 N -0.568 5.568 10 C 0.054 3.946 11 C 0.036 3.964 12 O -0.339 6.339 13 C 0.631 3.369 14 O -0.556 6.556 15 C -0.179 4.179 16 N -0.602 5.602 17 C 0.104 3.896 18 C -0.270 4.270 19 H 0.038 0.962 20 C -0.003 4.003 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.260 1.260 24 H -0.304 1.304 25 H -0.280 1.280 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.139 0.861 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.145 0.855 35 H 0.136 0.864 36 H 0.114 0.886 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.067 0.933 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.888 -8.557 26.116 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.087 3.913 3 H 0.061 0.939 4 C -0.069 4.069 5 C -0.166 4.166 6 C -0.105 4.105 7 C -0.173 4.173 8 C 0.069 3.931 9 N -0.305 5.305 10 C -0.067 4.067 11 C -0.037 4.037 12 O -0.249 6.249 13 C 0.387 3.613 14 O -0.443 6.443 15 C -0.200 4.200 16 N -0.324 5.324 17 C -0.039 4.039 18 C -0.399 4.399 19 H 0.056 0.944 20 C -0.202 4.202 21 N -0.564 5.564 22 Si 0.741 3.259 23 H -0.186 1.186 24 H -0.232 1.232 25 H -0.206 1.206 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.157 0.843 30 H 0.185 0.815 31 H 0.184 0.816 32 H 0.152 0.848 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.132 0.868 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.738 -7.962 25.551 26.819 hybrid contribution 1.084 0.071 -0.461 1.180 sum -0.654 -7.891 25.090 26.310 Atomic orbital electron populations 1.22036 0.93744 1.02647 1.01411 1.19654 0.94641 0.94064 0.82936 0.93910 1.20617 0.95236 0.96375 0.94688 1.21365 1.02293 0.94341 0.98561 1.21361 0.95477 1.00469 0.93168 1.20995 1.00280 0.92709 1.03270 1.17572 0.90383 0.94059 0.91040 1.45485 1.39030 1.18152 1.27858 1.23468 0.98592 0.99117 0.85478 1.24931 1.02883 0.83756 0.92143 1.87293 1.55181 1.44940 1.37506 1.18793 0.78563 0.81718 0.82266 1.90986 1.65503 1.57215 1.30643 1.21375 1.00144 1.02343 0.96175 1.44294 1.50751 1.14755 1.22634 1.21541 0.97745 0.85220 0.99436 1.18628 1.10320 0.92915 1.18059 0.94420 1.25839 0.98157 1.00442 0.95767 1.70177 1.33166 1.43669 1.09371 0.86317 0.78056 0.81571 0.79925 1.18597 1.23230 1.20600 0.91094 0.91212 0.93326 0.84309 0.81496 0.81559 0.84842 0.86011 0.83710 0.84597 0.86810 0.95240 0.95266 0.91486 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 8.80 71.98 0.63 -4.12 16 2 C 0.19 8.39 3.02 44.25 0.13 8.52 16 3 H 0.04 2.10 7.67 -2.39 -0.02 2.08 16 4 C -0.07 -2.58 4.99 -19.89 -0.10 -2.68 16 5 C -0.15 -4.46 7.70 22.29 0.17 -4.29 16 6 C -0.09 -2.00 10.04 22.25 0.22 -1.77 16 7 C -0.15 -3.44 9.49 22.39 0.21 -3.23 16 8 C 0.16 5.09 6.63 38.15 0.25 5.34 16 9 N -0.57 -15.13 3.16 -759.80 -2.40 -17.54 16 10 C 0.05 0.57 6.49 86.63 0.56 1.13 16 11 C 0.04 0.33 8.23 72.35 0.60 0.93 16 12 O -0.34 -8.63 11.09 -47.41 -0.53 -9.15 16 13 C 0.63 21.45 8.77 129.91 1.14 22.59 16 14 O -0.56 -25.52 14.75 19.65 0.29 -25.23 16 15 C -0.18 -7.37 8.93 22.39 0.20 -7.17 16 16 N -0.60 -30.31 2.41 -706.98 -1.71 -32.02 16 17 C 0.10 4.56 8.43 127.77 1.08 5.64 16 18 C -0.27 -16.50 9.70 84.03 0.82 -15.69 16 19 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 20 C 0.00 -0.20 4.95 84.86 0.42 0.22 16 21 N -0.92 -59.62 13.97 21.65 0.30 -59.31 16 22 Si 0.91 48.35 26.11 68.60 1.79 50.14 16 23 H -0.26 -12.59 6.48 99.48 0.64 -11.95 16 24 H -0.30 -16.18 7.11 99.48 0.71 -15.47 16 25 H -0.28 -15.23 7.11 99.48 0.71 -14.52 16 26 H 0.07 2.11 6.29 -2.39 -0.02 2.09 16 27 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.14 3.77 5.20 -2.91 -0.02 3.76 16 30 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 31 H 0.17 2.09 7.31 -2.91 -0.02 2.07 16 32 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.14 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.11 5.59 5.16 -2.91 -0.02 5.57 16 37 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.03 1.40 4.05 -2.39 -0.01 1.39 16 39 H 0.07 2.45 4.44 -2.39 -0.01 2.44 16 40 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -88.09 319.87 5.09 -83.01 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.00 Total: 4.68 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 6.34 Total: 5.42 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -3.81 Total: -108.87 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.24 Total: -34.38 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 1.79 Total: 50.14 kcal Total: -88.09 5.09 -83.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496251648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.308 kcal (2) G-P(sol) polarization free energy of solvation -88.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds