Wall clock time and date at job start Tue Mar 31 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47589 * 2 1 4 4 C 1.53091 * 109.48097 * 120.03122 * 2 1 3 5 5 C 1.53178 * 109.16587 * 177.59224 * 4 2 1 6 6 H 1.08997 * 109.54530 * 183.15319 * 5 4 2 7 7 C 1.50706 * 109.53997 * 62.88731 * 5 4 2 8 8 O 1.21278 * 119.99928 * 0.44346 * 7 5 4 9 9 N 1.34773 * 119.99797 * 180.44368 * 7 5 4 10 10 C 1.39469 * 119.99882 * 175.11351 * 9 7 5 11 11 C 1.38596 * 119.57797 * 184.95017 * 10 9 7 12 12 C 1.40814 * 118.79548 * 179.72026 * 11 10 9 13 13 C 1.41544 * 120.99960 * 180.25381 * 12 11 10 14 14 H 1.08002 * 119.99965 * 204.05541 * 13 12 11 15 15 C 1.40032 * 119.99598 * 24.04904 * 13 12 11 16 16 N 1.30733 * 120.00123 * 16.45043 * 15 13 12 17 17 Si 1.86801 * 119.99613 * 196.44585 * 15 13 12 18 18 H 1.48500 * 109.47281 * 60.00376 * 17 15 13 19 19 H 1.48508 * 109.46928 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47354 * 299.99981 * 17 15 13 21 21 C 1.41175 * 118.00511 * 0.53930 * 12 11 10 22 22 C 1.37590 * 119.01235 * 359.73813 * 21 12 11 23 23 N 1.32072 * 121.11343 * 359.97438 * 22 21 12 24 24 C 1.53177 * 109.03532 * 303.02578 * 5 4 2 25 25 C 1.53083 * 109.16738 * 56.97564 * 24 5 4 26 26 O 1.42896 * 109.48223 * 239.97748 * 2 1 3 27 27 H 1.08997 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46957 * 60.02619 * 1 2 3 29 29 H 1.09000 * 109.47537 * 300.02845 * 1 2 3 30 30 H 1.09004 * 109.52111 * 297.50066 * 4 2 1 31 31 H 1.09002 * 109.52138 * 57.68427 * 4 2 1 32 32 H 0.97001 * 120.00303 * 355.12187 * 9 7 5 33 33 H 1.08006 * 120.60595 * 0.02562 * 11 10 9 34 34 H 0.97003 * 120.00103 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.49364 * 179.71635 * 21 12 11 36 36 H 1.08006 * 119.44186 * 179.97438 * 22 21 12 37 37 H 1.09004 * 109.51951 * 297.06981 * 24 5 4 38 38 H 1.08999 * 109.52180 * 176.88963 * 24 5 4 39 39 H 1.09005 * 109.48299 * 182.41250 * 25 24 5 40 40 H 1.09007 * 109.49376 * 62.38036 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7223 1.2495 5 6 3.5711 -0.7709 1.2122 6 1 3.9391 -1.3328 2.0706 7 6 4.1211 0.6316 1.2519 8 8 3.3650 1.5779 1.3130 9 7 5.4531 0.8342 1.2195 10 6 5.9596 2.1320 1.1533 11 6 7.3249 2.3274 1.0166 12 6 7.8179 3.6445 0.9454 13 6 9.2029 3.8977 0.8003 14 1 9.6166 4.8405 1.1264 15 6 10.0367 2.9256 0.2340 16 7 9.5192 1.9363 -0.4463 17 14 11.8884 3.0425 0.4504 18 1 12.2213 3.0019 1.8970 19 1 12.5406 1.9009 -0.2403 20 1 12.3757 4.3177 -0.1341 21 6 6.8899 4.7050 1.0293 22 6 5.5529 4.4123 1.1704 23 7 5.1303 3.1623 1.2274 24 6 4.0176 -1.4599 -0.0810 25 6 3.4308 -0.7092 -1.2790 26 8 2.0066 -0.6740 -1.1664 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5134 -0.8902 29 1 -0.3634 0.5143 0.8897 30 1 1.7148 -0.1844 2.1399 31 1 1.6442 -1.7375 1.2708 32 1 6.0595 0.0775 1.2421 33 1 7.9981 1.4846 0.9605 34 1 10.0968 1.2631 -0.8389 35 1 7.2244 5.7309 0.9838 36 1 4.8369 5.2183 1.2357 37 1 3.6613 -2.4901 -0.0865 38 1 5.1059 -1.4497 -0.1421 39 1 3.7100 -1.2201 -2.2005 40 1 3.8192 0.3092 -1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540655920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:06 Heat of formation + Delta-G solvation = -56.381637 kcal Electronic energy + Delta-G solvation = -23433.333818 eV Core-core repulsion = 20019.618534 eV Total energy + Delta-G solvation = -3413.715284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49595 -38.73430 -37.41993 -34.42212 -33.93077 -33.43907 -32.55152 -30.57643 -28.66320 -27.79955 -26.04104 -24.69463 -22.86175 -21.99765 -21.77711 -20.59185 -19.14016 -17.71526 -16.65257 -16.18174 -16.03898 -15.71094 -15.26682 -14.98234 -14.43137 -14.25052 -14.12168 -13.83535 -13.55342 -13.00824 -12.80255 -12.61288 -12.45757 -12.31098 -12.01991 -11.89374 -11.80699 -11.47765 -11.25423 -11.02880 -10.93482 -10.68515 -10.35555 -10.32437 -10.18733 -9.73830 -9.51096 -9.37565 -9.02925 -8.04159 -7.74694 -7.07005 -6.85190 -4.65529 2.50900 2.76451 2.97706 3.00564 3.16646 3.40892 3.59851 3.81132 3.90998 4.61170 4.65332 4.76325 4.82951 4.98859 5.17798 5.32731 5.47465 5.57945 5.63382 5.64901 5.68018 5.75463 5.84355 5.94031 5.96035 6.01952 6.07383 6.23037 6.35228 6.55956 6.61701 6.77334 6.90694 7.06177 7.35275 7.39385 7.42313 7.73157 7.89194 8.17578 8.38346 8.66226 8.70308 8.85172 9.65326 10.02090 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025380 B = 0.004142 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.980530 B = 6758.672821 C = 7394.255177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 H 0.088 0.912 4 C -0.124 4.124 5 C -0.114 4.114 6 H 0.097 0.903 7 C 0.501 3.499 8 O -0.478 6.478 9 N -0.657 5.657 10 C 0.336 3.664 11 C -0.244 4.244 12 C 0.144 3.856 13 C -0.456 4.456 14 H 0.082 0.918 15 C 0.079 3.921 16 N -0.788 5.788 17 Si 0.912 3.088 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.285 4.285 22 C 0.119 3.881 23 N -0.554 5.554 24 C -0.145 4.145 25 C 0.060 3.940 26 O -0.384 6.384 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.406 0.594 33 H 0.127 0.873 34 H 0.283 0.717 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.083 -8.844 0.947 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 H 0.106 0.894 4 C -0.162 4.162 5 C -0.136 4.136 6 H 0.115 0.885 7 C 0.286 3.714 8 O -0.348 6.348 9 N -0.303 5.303 10 C 0.111 3.889 11 C -0.270 4.270 12 C 0.136 3.864 13 C -0.487 4.487 14 H 0.100 0.900 15 C -0.140 4.140 16 N -0.413 5.413 17 Si 0.736 3.264 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.188 1.188 21 C -0.309 4.309 22 C -0.035 4.035 23 N -0.274 5.274 24 C -0.183 4.183 25 C -0.017 4.017 26 O -0.304 6.304 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.241 0.759 33 H 0.145 0.855 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.141 0.859 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.674 -8.655 0.796 12.279 hybrid contribution 2.508 -0.185 0.135 2.518 sum -6.166 -8.840 0.931 10.819 Atomic orbital electron populations 1.21718 0.93547 1.02084 1.02342 1.22391 0.94667 0.97346 0.84094 0.89436 1.21966 0.92949 1.01387 0.99945 1.21472 0.97589 0.94528 0.99979 0.88453 1.20585 0.82524 0.90908 0.77418 1.90724 1.56526 1.43161 1.44410 1.43481 1.07185 1.07082 1.72533 1.18200 0.89405 0.84043 0.97209 1.21543 0.91883 0.99189 1.14353 1.17555 0.93098 0.90183 0.85605 1.19558 0.91876 1.01704 1.35587 0.89998 1.25949 1.01757 0.94036 0.92282 1.69764 1.38299 1.10582 1.22659 0.86310 0.81411 0.78928 0.79786 1.18700 1.20222 1.18845 1.21897 0.94006 0.98712 1.16259 1.21759 0.93430 0.92218 0.96139 1.67215 1.37671 0.98284 1.24183 1.22174 1.01634 1.00283 0.94249 1.22526 0.81351 1.00049 0.97781 1.87850 1.20626 1.78245 1.43659 0.92443 0.92115 0.91163 0.90212 0.90905 0.75896 0.85499 0.90650 0.88011 0.85926 0.90129 0.90249 0.88789 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.56 37.16 0.36 -1.31 16 2 C 0.07 1.06 2.97 -26.68 -0.08 0.98 16 3 H 0.09 1.58 5.82 -51.93 -0.30 1.28 16 4 C -0.12 -1.61 4.56 -26.59 -0.12 -1.73 16 5 C -0.11 -1.51 3.04 -91.59 -0.28 -1.78 16 6 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 7 C 0.50 9.08 5.78 -10.98 -0.06 9.02 16 8 O -0.48 -10.43 12.11 5.56 0.07 -10.36 16 9 N -0.66 -12.50 5.22 -11.49 -0.06 -12.56 16 10 C 0.34 7.99 7.42 -154.70 -1.15 6.84 16 11 C -0.24 -6.09 8.62 -38.48 -0.33 -6.42 16 12 C 0.14 3.74 5.60 -106.55 -0.60 3.14 16 13 C -0.46 -11.59 9.12 -37.65 -0.34 -11.94 16 14 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 15 C 0.08 1.88 5.21 -17.35 -0.09 1.78 16 16 N -0.79 -19.04 10.91 55.55 0.61 -18.43 16 17 Si 0.91 17.62 29.59 -169.99 -5.03 12.59 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 21 C -0.28 -6.95 9.90 -38.70 -0.38 -7.33 16 22 C 0.12 2.83 11.15 -17.68 -0.20 2.64 16 23 N -0.55 -13.93 7.85 -12.52 -0.10 -14.02 16 24 C -0.15 -1.72 5.57 -26.60 -0.15 -1.87 16 25 C 0.06 0.84 6.62 37.20 0.25 1.09 16 26 O -0.38 -5.85 10.41 -35.23 -0.37 -6.22 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.06 8.02 -51.93 -0.42 0.64 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.41 6.37 8.24 -40.82 -0.34 6.04 16 33 H 0.13 3.13 6.20 -52.48 -0.33 2.81 16 34 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 35 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 36 H 0.12 2.56 8.06 -52.48 -0.42 2.14 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.87 7.61 -51.93 -0.40 0.48 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.90 7.38 -51.93 -0.38 0.52 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -30.34 325.10 -8.67 -39.02 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.51 Total: 11.98 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -3.18 Total: -6.89 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.45 Total: -45.02 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.30 Total: -16.58 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.34 -8.67 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540655920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.364 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds