Wall clock time and date at job start Tue Mar 31 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47589 * 2 1 4 4 C 1.53091 * 109.48097 * 120.03122 * 2 1 3 5 5 C 1.53178 * 109.16587 * 177.59224 * 4 2 1 6 6 H 1.08997 * 109.54530 * 183.15319 * 5 4 2 7 7 C 1.50706 * 109.53997 * 62.88731 * 5 4 2 8 8 O 1.21278 * 119.99928 * 0.44346 * 7 5 4 9 9 N 1.34773 * 119.99797 * 180.44368 * 7 5 4 10 10 C 1.39469 * 119.99882 * 175.11351 * 9 7 5 11 11 C 1.38596 * 119.57797 * 184.95017 * 10 9 7 12 12 C 1.40814 * 118.79548 * 179.72026 * 11 10 9 13 13 C 1.41544 * 120.99960 * 180.25381 * 12 11 10 14 14 H 1.08002 * 119.99965 * 204.05541 * 13 12 11 15 15 C 1.40032 * 119.99598 * 24.04904 * 13 12 11 16 16 N 1.30733 * 120.00123 * 16.45043 * 15 13 12 17 17 Si 1.86801 * 119.99613 * 196.44585 * 15 13 12 18 18 H 1.48500 * 109.47281 * 60.00376 * 17 15 13 19 19 H 1.48508 * 109.46928 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47354 * 299.99981 * 17 15 13 21 21 C 1.41175 * 118.00511 * 0.53930 * 12 11 10 22 22 C 1.37590 * 119.01235 * 359.73813 * 21 12 11 23 23 N 1.32072 * 121.11343 * 359.97438 * 22 21 12 24 24 C 1.53177 * 109.03532 * 303.02578 * 5 4 2 25 25 C 1.53083 * 109.16738 * 56.97564 * 24 5 4 26 26 O 1.42896 * 109.48223 * 239.97748 * 2 1 3 27 27 H 1.08997 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46957 * 60.02619 * 1 2 3 29 29 H 1.09000 * 109.47537 * 300.02845 * 1 2 3 30 30 H 1.09004 * 109.52111 * 297.50066 * 4 2 1 31 31 H 1.09002 * 109.52138 * 57.68427 * 4 2 1 32 32 H 0.97001 * 120.00303 * 355.12187 * 9 7 5 33 33 H 1.08006 * 120.60595 * 0.02562 * 11 10 9 34 34 H 0.97003 * 120.00103 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.49364 * 179.71635 * 21 12 11 36 36 H 1.08006 * 119.44186 * 179.97438 * 22 21 12 37 37 H 1.09004 * 109.51951 * 297.06981 * 24 5 4 38 38 H 1.08999 * 109.52180 * 176.88963 * 24 5 4 39 39 H 1.09005 * 109.48299 * 182.41250 * 25 24 5 40 40 H 1.09007 * 109.49376 * 62.38036 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7223 1.2495 5 6 3.5711 -0.7709 1.2122 6 1 3.9391 -1.3328 2.0706 7 6 4.1211 0.6316 1.2519 8 8 3.3650 1.5779 1.3130 9 7 5.4531 0.8342 1.2195 10 6 5.9596 2.1320 1.1533 11 6 7.3249 2.3274 1.0166 12 6 7.8179 3.6445 0.9454 13 6 9.2029 3.8977 0.8003 14 1 9.6166 4.8405 1.1264 15 6 10.0367 2.9256 0.2340 16 7 9.5192 1.9363 -0.4463 17 14 11.8884 3.0425 0.4504 18 1 12.2213 3.0019 1.8970 19 1 12.5406 1.9009 -0.2403 20 1 12.3757 4.3177 -0.1341 21 6 6.8899 4.7050 1.0293 22 6 5.5529 4.4123 1.1704 23 7 5.1303 3.1623 1.2274 24 6 4.0176 -1.4599 -0.0810 25 6 3.4308 -0.7092 -1.2790 26 8 2.0066 -0.6740 -1.1664 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5134 -0.8902 29 1 -0.3634 0.5143 0.8897 30 1 1.7148 -0.1844 2.1399 31 1 1.6442 -1.7375 1.2708 32 1 6.0595 0.0775 1.2421 33 1 7.9981 1.4846 0.9605 34 1 10.0968 1.2631 -0.8389 35 1 7.2244 5.7309 0.9838 36 1 4.8369 5.2183 1.2357 37 1 3.6613 -2.4901 -0.0865 38 1 5.1059 -1.4497 -0.1421 39 1 3.7100 -1.2201 -2.2005 40 1 3.8192 0.3092 -1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540655920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:06 Heat of formation + Delta-G solvation = -74.910246 kcal Electronic energy + Delta-G solvation = -23434.137279 eV Core-core repulsion = 20019.618534 eV Total energy + Delta-G solvation = -3414.518745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.84567 -40.32532 -38.93565 -36.16390 -35.58186 -34.65456 -33.63379 -32.46389 -30.42155 -28.83259 -27.93039 -25.90869 -24.11948 -23.81996 -23.09492 -22.11404 -20.58504 -19.48174 -18.16071 -17.46179 -17.27098 -17.11737 -16.92135 -16.26895 -16.08761 -15.84207 -15.66943 -15.18759 -14.82543 -14.68139 -14.39201 -14.25418 -13.58883 -13.36124 -13.34173 -13.17268 -12.96163 -12.88269 -12.81156 -12.65263 -12.09262 -12.05587 -11.95572 -11.74790 -11.59643 -11.33961 -11.12680 -10.87058 -10.31265 -9.96237 -9.56976 -8.87487 -8.65687 -6.58175 0.73098 0.99100 1.40628 1.51157 1.56130 1.86397 2.14473 2.19467 2.79341 2.82661 3.50426 3.64235 3.72249 3.79807 3.96110 4.00538 4.24710 4.28980 4.42376 4.53749 4.65536 4.70393 4.73662 4.79612 4.83961 4.86705 4.91270 4.96496 5.02797 5.05758 5.08408 5.20559 5.23427 5.30133 5.46696 5.64346 5.88881 6.13302 6.27009 6.45903 6.59802 6.77886 6.81443 7.31603 7.82821 8.24755 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025380 B = 0.004142 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.980530 B = 6758.672821 C = 7394.255177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.067 3.933 3 H 0.043 0.957 4 C -0.120 4.120 5 C -0.105 4.105 6 H 0.133 0.867 7 C 0.496 3.504 8 O -0.518 6.518 9 N -0.651 5.651 10 C 0.334 3.666 11 C -0.262 4.262 12 C 0.115 3.885 13 C -0.487 4.487 14 H 0.083 0.917 15 C 0.042 3.958 16 N -0.810 5.810 17 Si 0.987 3.013 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.261 1.261 21 C -0.301 4.301 22 C 0.112 3.888 23 N -0.578 5.578 24 C -0.138 4.138 25 C 0.055 3.945 26 O -0.392 6.392 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.421 0.579 33 H 0.125 0.875 34 H 0.293 0.707 35 H 0.114 0.886 36 H 0.147 0.853 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.554 -11.221 1.239 13.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.010 3.990 3 H 0.061 0.939 4 C -0.158 4.158 5 C -0.126 4.126 6 H 0.151 0.849 7 C 0.283 3.717 8 O -0.391 6.391 9 N -0.299 5.299 10 C 0.108 3.892 11 C -0.287 4.287 12 C 0.106 3.894 13 C -0.517 4.517 14 H 0.101 0.899 15 C -0.176 4.176 16 N -0.435 5.435 17 Si 0.807 3.193 18 H -0.184 1.184 19 H -0.188 1.188 20 H -0.185 1.185 21 C -0.325 4.325 22 C -0.041 4.041 23 N -0.298 5.298 24 C -0.175 4.175 25 C -0.022 4.022 26 O -0.312 6.312 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.259 0.741 33 H 0.143 0.857 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.165 0.835 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.132 0.868 40 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -8.159 -11.064 1.086 13.790 hybrid contribution 2.285 0.574 -0.019 2.357 sum -5.873 -10.490 1.067 12.069 Atomic orbital electron populations 1.21708 0.91609 1.03378 1.02552 1.22388 0.96284 0.95345 0.85031 0.93863 1.21976 0.92601 1.02750 0.98500 1.21562 0.97701 0.91123 1.02260 0.84888 1.21599 0.81590 0.92834 0.75663 1.90711 1.57275 1.45207 1.45903 1.43532 1.08216 1.05836 1.72267 1.18467 0.89246 0.85605 0.95848 1.21532 0.92424 0.98877 1.15894 1.17990 0.94035 0.91160 0.86170 1.19857 0.92300 1.02759 1.36801 0.89888 1.26797 1.06389 0.93166 0.91215 1.69793 1.40398 1.10959 1.22335 0.85180 0.75070 0.79278 0.79777 1.18390 1.18813 1.18542 1.22072 0.94207 0.99144 1.17053 1.22189 0.93900 0.92753 0.95301 1.67346 1.38244 0.98980 1.25270 1.22192 1.02200 1.01223 0.91932 1.22630 0.81020 0.98366 1.00195 1.87841 1.21174 1.77963 1.44204 0.90478 0.92659 0.90325 0.90757 0.87648 0.74140 0.85727 0.89566 0.86813 0.83550 0.86778 0.89256 0.86772 0.97028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.56 71.98 0.69 -2.39 16 2 C 0.07 1.93 2.97 30.62 0.09 2.02 16 3 H 0.04 1.64 5.82 -2.39 -0.01 1.63 16 4 C -0.12 -2.84 4.56 30.68 0.14 -2.70 16 5 C -0.11 -2.53 3.04 -11.42 -0.03 -2.56 16 6 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 7 C 0.50 17.92 5.78 87.66 0.51 18.42 16 8 O -0.52 -23.26 12.11 -3.02 -0.04 -23.30 16 9 N -0.65 -24.88 5.22 -308.66 -1.61 -26.49 16 10 C 0.33 16.30 7.42 132.75 0.98 17.29 16 11 C -0.26 -13.41 8.62 22.99 0.20 -13.22 16 12 C 0.11 6.14 5.60 -21.11 -0.12 6.02 16 13 C -0.49 -25.16 9.12 23.52 0.21 -24.95 16 14 H 0.08 4.11 7.90 -2.91 -0.02 4.09 16 15 C 0.04 1.98 5.21 85.29 0.44 2.42 16 16 N -0.81 -39.07 10.91 21.84 0.24 -38.83 16 17 Si 0.99 35.38 29.59 68.60 2.03 37.41 16 18 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 19 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 20 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 21 C -0.30 -15.13 9.90 22.84 0.23 -14.90 16 22 C 0.11 5.50 11.15 84.50 0.94 6.45 16 23 N -0.58 -29.94 7.85 -193.54 -1.52 -31.46 16 24 C -0.14 -2.86 5.57 30.68 0.17 -2.69 16 25 C 0.05 1.49 6.62 72.01 0.48 1.96 16 26 O -0.39 -11.55 10.41 -148.98 -1.55 -13.10 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.84 8.02 -2.38 -0.02 1.83 16 31 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.42 12.94 8.24 -92.71 -0.76 12.17 16 33 H 0.13 6.29 6.20 -2.91 -0.02 6.28 16 34 H 0.29 12.60 8.29 -92.71 -0.77 11.83 16 35 H 0.11 5.24 8.06 -2.91 -0.02 5.22 16 36 H 0.15 6.23 8.06 -2.91 -0.02 6.20 16 37 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.70 7.61 -2.39 -0.02 1.68 16 39 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 40 H 0.01 0.40 7.38 -2.38 -0.02 0.38 16 Total: -1.00 -68.41 325.10 2.77 -65.63 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: 0.29 Total: 38.95 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 4.93 Total: -8.82 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -2.89 Total: -96.78 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -1.59 Total: -36.39 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Total: -68.41 2.77 -65.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540655920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.277 kcal (2) G-P(sol) polarization free energy of solvation -68.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds