Wall clock time and date at job start Tue Mar 31 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.48001 * 2 1 4 4 C 1.53089 * 109.48884 * 239.96950 * 2 1 3 5 5 C 1.53182 * 109.16164 * 182.39968 * 4 2 1 6 6 H 1.09001 * 109.61297 * 176.89023 * 5 4 2 7 7 C 1.50702 * 109.54490 * 297.11140 * 5 4 2 8 8 O 1.21275 * 119.99806 * 359.56019 * 7 5 4 9 9 N 1.34769 * 120.00138 * 179.55467 * 7 5 4 10 10 C 1.39463 * 120.00225 * 185.09805 * 9 7 5 11 11 C 1.38599 * 119.58357 * 185.35332 * 10 9 7 12 12 C 1.40810 * 118.80120 * 179.97438 * 11 10 9 13 13 C 1.41536 * 120.99660 * 180.29751 * 12 11 10 14 14 H 1.07997 * 120.00488 * 333.51932 * 13 12 11 15 15 C 1.40034 * 119.99952 * 153.52064 * 13 12 11 16 16 N 1.30744 * 120.00219 * 350.19667 * 15 13 12 17 17 Si 1.86799 * 119.99993 * 170.19173 * 15 13 12 18 18 H 1.48497 * 109.47313 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47000 * 120.00198 * 17 15 13 20 20 H 1.48500 * 109.47610 * 240.00020 * 17 15 13 21 21 C 1.41176 * 118.00335 * 0.02562 * 12 11 10 22 22 C 1.37589 * 119.01551 * 0.02562 * 21 12 11 23 23 N 1.32079 * 121.11040 * 359.97438 * 22 21 12 24 24 C 1.53178 * 109.03370 * 56.98237 * 5 4 2 25 25 C 1.53087 * 109.16525 * 303.01529 * 24 5 4 26 26 O 1.42901 * 109.48278 * 120.02110 * 2 1 3 27 27 H 1.09007 * 109.47029 * 299.97494 * 1 2 3 28 28 H 1.08996 * 109.47788 * 59.97915 * 1 2 3 29 29 H 1.09007 * 109.47205 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.52145 * 62.49782 * 4 2 1 31 31 H 1.09002 * 109.52434 * 302.30457 * 4 2 1 32 32 H 0.97008 * 119.99509 * 5.09315 * 9 7 5 33 33 H 1.08003 * 120.60108 * 0.02562 * 11 10 9 34 34 H 0.96997 * 119.99985 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.48920 * 180.02562 * 21 12 11 36 36 H 1.07997 * 119.44177 * 180.02562 * 22 21 12 37 37 H 1.09000 * 109.52342 * 62.92854 * 24 5 4 38 38 H 1.09000 * 109.51654 * 183.04779 * 24 5 4 39 39 H 1.08994 * 109.48158 * 177.59363 * 25 24 5 40 40 H 1.09002 * 109.48324 * 297.63533 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7223 -1.2494 5 6 3.5713 -0.7705 -1.2119 6 1 3.9408 -1.3315 -2.0704 7 6 4.1211 0.6321 -1.2517 8 8 3.3649 1.5782 -1.3128 9 7 5.4530 0.8349 -1.2191 10 6 5.9593 2.1325 -1.1485 11 6 7.3276 2.3384 -1.2278 12 6 7.8208 3.6553 -1.1552 13 6 9.2088 3.9194 -1.2374 14 1 9.9208 3.1662 -0.9340 15 6 9.6591 5.1574 -1.7123 16 7 8.8156 5.9946 -2.2573 17 14 11.4649 5.6128 -1.5671 18 1 12.2052 4.5011 -0.9182 19 1 12.0246 5.8556 -2.9211 20 1 11.6008 6.8436 -0.7474 21 6 6.8887 4.7048 -1.0038 22 6 5.5484 4.4020 -0.9333 23 7 5.1263 3.1525 -1.0054 24 6 4.0178 -1.4596 0.0812 25 6 3.4308 -0.7089 1.2793 26 8 2.0066 -0.6740 1.1665 27 1 -0.3633 0.5135 0.8903 28 1 -0.3634 0.5141 -0.8897 29 1 -0.3634 -1.0277 -0.0005 30 1 1.7150 -0.1844 -2.1398 31 1 1.6447 -1.7376 -1.2708 32 1 6.0596 0.0783 -1.2447 33 1 8.0033 1.5039 -1.3439 34 1 9.1275 6.8523 -2.5859 35 1 7.2228 5.7301 -0.9442 36 1 4.8294 5.1995 -0.8179 37 1 3.6617 -2.4898 0.0867 38 1 5.1061 -1.4501 0.1419 39 1 3.7100 -1.2197 2.2007 40 1 3.8190 0.3095 1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540655922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:10 Heat of formation + Delta-G solvation = -55.864333 kcal Electronic energy + Delta-G solvation = -23212.035181 eV Core-core repulsion = 19798.342329 eV Total energy + Delta-G solvation = -3413.692852 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55494 -38.76358 -37.45534 -34.56944 -33.86912 -33.38113 -32.58085 -30.69893 -28.61274 -27.84326 -26.03883 -24.74405 -22.93835 -21.91902 -21.78998 -20.72876 -19.07703 -17.91618 -16.50624 -16.23002 -16.13431 -15.85705 -15.17433 -15.05032 -14.50785 -14.23117 -14.05958 -13.92435 -13.59501 -13.09294 -12.87245 -12.51430 -12.40045 -12.35389 -12.05446 -11.94697 -11.86211 -11.45409 -11.26034 -11.08203 -11.01046 -10.73897 -10.40084 -10.38423 -10.01491 -9.74004 -9.52676 -9.44216 -9.05602 -8.05014 -7.76861 -7.06725 -6.78369 -4.66113 2.51367 2.71731 3.00350 3.05248 3.12701 3.42515 3.52345 3.83459 3.85902 4.58101 4.65613 4.70102 4.77434 4.93403 5.12161 5.26941 5.43534 5.51197 5.57843 5.62524 5.66213 5.71292 5.79407 5.89611 5.91863 5.98936 6.03325 6.19771 6.31790 6.54759 6.56907 6.74757 6.88745 7.11402 7.34347 7.36541 7.47947 7.75500 7.87235 8.15381 8.43619 8.64716 8.71933 8.81446 9.65194 10.07305 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036143 B = 0.003505 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.522561 B = 7986.552401 C = 8321.730413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 H 0.089 0.911 4 C -0.125 4.125 5 C -0.114 4.114 6 H 0.098 0.902 7 C 0.501 3.499 8 O -0.475 6.475 9 N -0.660 5.660 10 C 0.346 3.654 11 C -0.302 4.302 12 C 0.144 3.856 13 C -0.455 4.455 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.791 5.791 17 Si 0.916 3.084 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.271 1.271 21 C -0.221 4.221 22 C 0.102 3.898 23 N -0.552 5.552 24 C -0.145 4.145 25 C 0.060 3.940 26 O -0.384 6.384 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.405 0.595 33 H 0.101 0.899 34 H 0.282 0.718 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 -11.716 2.421 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 H 0.107 0.893 4 C -0.163 4.163 5 C -0.136 4.136 6 H 0.116 0.884 7 C 0.286 3.714 8 O -0.345 6.345 9 N -0.306 5.306 10 C 0.119 3.881 11 C -0.328 4.328 12 C 0.136 3.864 13 C -0.487 4.487 14 H 0.099 0.901 15 C -0.144 4.144 16 N -0.417 5.417 17 Si 0.740 3.260 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.196 1.196 21 C -0.244 4.244 22 C -0.049 4.049 23 N -0.272 5.272 24 C -0.183 4.183 25 C -0.017 4.017 26 O -0.304 6.304 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.239 0.761 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.307 -11.059 2.457 14.048 hybrid contribution 2.436 0.103 -0.443 2.478 sum -5.870 -10.957 2.013 12.592 Atomic orbital electron populations 1.21720 0.93501 1.02098 1.02398 1.22400 0.94712 0.97367 0.84010 0.89342 1.21971 0.92890 1.01438 1.00002 1.21478 0.97667 0.94480 0.99963 0.88408 1.20587 0.82499 0.90923 0.77414 1.90732 1.56486 1.43211 1.44113 1.43500 1.07235 1.07035 1.72847 1.18011 0.88925 0.84217 0.96962 1.21233 0.92180 0.98226 1.21138 1.17606 0.93753 0.89732 0.85323 1.19600 0.91843 0.99215 1.38001 0.90126 1.25969 1.00457 0.95520 0.92436 1.69757 1.36575 1.08041 1.27278 0.86142 0.81623 0.79402 0.78864 1.18367 1.19852 1.19607 1.22329 0.92726 1.01258 1.08055 1.21915 0.94066 0.91781 0.97188 1.67180 1.37600 0.98792 1.23612 1.22171 1.01450 1.00360 0.94314 1.22524 0.81513 1.00006 0.97701 1.87853 1.20527 1.78259 1.43718 0.92084 0.91126 0.92439 0.90169 0.90865 0.76057 0.88113 0.90686 0.85057 0.85912 0.90094 0.90408 0.88852 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.56 37.16 0.36 -1.27 16 2 C 0.07 1.02 2.97 -26.69 -0.08 0.94 16 3 H 0.09 1.56 5.82 -51.93 -0.30 1.26 16 4 C -0.12 -1.56 4.56 -26.59 -0.12 -1.68 16 5 C -0.11 -1.42 3.04 -91.58 -0.28 -1.70 16 6 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 7 C 0.50 8.73 5.77 -10.99 -0.06 8.67 16 8 O -0.48 -10.22 12.15 5.56 0.07 -10.15 16 9 N -0.66 -11.81 5.22 -11.49 -0.06 -11.87 16 10 C 0.35 7.98 7.40 -154.71 -1.15 6.83 16 11 C -0.30 -7.15 9.73 -38.48 -0.37 -7.53 16 12 C 0.14 3.76 5.60 -106.55 -0.60 3.16 16 13 C -0.46 -11.60 9.14 -37.65 -0.34 -11.94 16 14 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 15 C 0.07 1.81 5.31 -17.34 -0.09 1.72 16 16 N -0.79 -19.79 10.70 55.55 0.59 -19.20 16 17 Si 0.92 17.92 29.57 -169.99 -5.03 12.89 16 18 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 21 C -0.22 -5.70 8.77 -38.70 -0.34 -6.04 16 22 C 0.10 2.52 11.15 -17.68 -0.20 2.32 16 23 N -0.55 -13.88 7.89 -12.53 -0.10 -13.98 16 24 C -0.14 -1.56 5.57 -26.59 -0.15 -1.71 16 25 C 0.06 0.77 6.62 37.20 0.25 1.02 16 26 O -0.38 -5.58 10.41 -35.23 -0.37 -5.95 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.04 8.02 -51.93 -0.42 0.62 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.40 5.63 8.25 -40.82 -0.34 5.30 16 33 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 34 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 35 H 0.13 3.45 6.11 -52.48 -0.32 3.13 16 36 H 0.12 2.75 8.06 -52.49 -0.42 2.32 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.73 7.62 -51.93 -0.40 0.34 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.84 7.38 -51.93 -0.38 0.46 16 LS Contribution 324.91 15.07 4.90 4.90 Total: -1.00 -30.89 324.91 -8.68 -39.57 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.51 Total: 11.00 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -3.18 Total: -7.20 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.44 Total: -45.05 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.30 Total: -16.10 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.89 -8.68 -39.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540655922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.295 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds