Wall clock time and date at job start Tue Mar 31 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.48001 * 2 1 4 4 C 1.53089 * 109.48884 * 239.96950 * 2 1 3 5 5 C 1.53182 * 109.16164 * 182.39968 * 4 2 1 6 6 H 1.09001 * 109.61297 * 176.89023 * 5 4 2 7 7 C 1.50702 * 109.54490 * 297.11140 * 5 4 2 8 8 O 1.21275 * 119.99806 * 359.56019 * 7 5 4 9 9 N 1.34769 * 120.00138 * 179.55467 * 7 5 4 10 10 C 1.39463 * 120.00225 * 185.09805 * 9 7 5 11 11 C 1.38599 * 119.58357 * 185.35332 * 10 9 7 12 12 C 1.40810 * 118.80120 * 179.97438 * 11 10 9 13 13 C 1.41536 * 120.99660 * 180.29751 * 12 11 10 14 14 H 1.07997 * 120.00488 * 333.51932 * 13 12 11 15 15 C 1.40034 * 119.99952 * 153.52064 * 13 12 11 16 16 N 1.30744 * 120.00219 * 350.19667 * 15 13 12 17 17 Si 1.86799 * 119.99993 * 170.19173 * 15 13 12 18 18 H 1.48497 * 109.47313 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47000 * 120.00198 * 17 15 13 20 20 H 1.48500 * 109.47610 * 240.00020 * 17 15 13 21 21 C 1.41176 * 118.00335 * 0.02562 * 12 11 10 22 22 C 1.37589 * 119.01551 * 0.02562 * 21 12 11 23 23 N 1.32079 * 121.11040 * 359.97438 * 22 21 12 24 24 C 1.53178 * 109.03370 * 56.98237 * 5 4 2 25 25 C 1.53087 * 109.16525 * 303.01529 * 24 5 4 26 26 O 1.42901 * 109.48278 * 120.02110 * 2 1 3 27 27 H 1.09007 * 109.47029 * 299.97494 * 1 2 3 28 28 H 1.08996 * 109.47788 * 59.97915 * 1 2 3 29 29 H 1.09007 * 109.47205 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.52145 * 62.49782 * 4 2 1 31 31 H 1.09002 * 109.52434 * 302.30457 * 4 2 1 32 32 H 0.97008 * 119.99509 * 5.09315 * 9 7 5 33 33 H 1.08003 * 120.60108 * 0.02562 * 11 10 9 34 34 H 0.96997 * 119.99985 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.48920 * 180.02562 * 21 12 11 36 36 H 1.07997 * 119.44177 * 180.02562 * 22 21 12 37 37 H 1.09000 * 109.52342 * 62.92854 * 24 5 4 38 38 H 1.09000 * 109.51654 * 183.04779 * 24 5 4 39 39 H 1.08994 * 109.48158 * 177.59363 * 25 24 5 40 40 H 1.09002 * 109.48324 * 297.63533 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7223 -1.2494 5 6 3.5713 -0.7705 -1.2119 6 1 3.9408 -1.3315 -2.0704 7 6 4.1211 0.6321 -1.2517 8 8 3.3649 1.5782 -1.3128 9 7 5.4530 0.8349 -1.2191 10 6 5.9593 2.1325 -1.1485 11 6 7.3276 2.3384 -1.2278 12 6 7.8208 3.6553 -1.1552 13 6 9.2088 3.9194 -1.2374 14 1 9.9208 3.1662 -0.9340 15 6 9.6591 5.1574 -1.7123 16 7 8.8156 5.9946 -2.2573 17 14 11.4649 5.6128 -1.5671 18 1 12.2052 4.5011 -0.9182 19 1 12.0246 5.8556 -2.9211 20 1 11.6008 6.8436 -0.7474 21 6 6.8887 4.7048 -1.0038 22 6 5.5484 4.4020 -0.9333 23 7 5.1263 3.1525 -1.0054 24 6 4.0178 -1.4596 0.0812 25 6 3.4308 -0.7089 1.2793 26 8 2.0066 -0.6740 1.1665 27 1 -0.3633 0.5135 0.8903 28 1 -0.3634 0.5141 -0.8897 29 1 -0.3634 -1.0277 -0.0005 30 1 1.7150 -0.1844 -2.1398 31 1 1.6447 -1.7376 -1.2708 32 1 6.0596 0.0783 -1.2447 33 1 8.0033 1.5039 -1.3439 34 1 9.1275 6.8523 -2.5859 35 1 7.2228 5.7301 -0.9442 36 1 4.8294 5.1995 -0.8179 37 1 3.6617 -2.4898 0.0867 38 1 5.1061 -1.4501 0.1419 39 1 3.7100 -1.2197 2.2007 40 1 3.8190 0.3095 1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540655922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:10 Heat of formation + Delta-G solvation = -75.089431 kcal Electronic energy + Delta-G solvation = -23212.868844 eV Core-core repulsion = 19798.342329 eV Total energy + Delta-G solvation = -3414.526515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.85166 -40.32975 -38.94564 -36.28865 -35.43758 -34.60642 -33.61691 -32.60716 -30.37049 -28.82349 -27.94341 -25.92005 -24.14029 -23.68293 -23.16837 -22.17889 -20.46455 -19.68281 -17.87552 -17.72733 -17.28565 -17.09324 -16.84945 -16.30236 -16.04292 -15.89066 -15.61535 -15.21441 -14.82486 -14.71015 -14.36888 -14.21016 -13.57236 -13.38579 -13.33275 -13.14452 -12.90940 -12.88802 -12.87308 -12.78122 -12.10250 -12.04448 -11.83049 -11.72990 -11.57906 -11.33776 -11.18234 -10.84368 -10.29120 -9.98362 -9.60237 -8.88149 -8.60968 -6.60698 0.73644 0.94330 1.40269 1.52287 1.55908 1.88351 2.11727 2.20275 2.81119 2.84346 3.50415 3.65222 3.71913 3.80402 3.97154 4.00775 4.24028 4.30457 4.43284 4.54735 4.66977 4.70956 4.73273 4.80408 4.82116 4.89111 4.91576 4.96883 5.01816 5.05029 5.08869 5.23619 5.24578 5.30534 5.45253 5.64185 5.94883 6.11519 6.28729 6.43539 6.61548 6.78172 6.81363 7.31721 7.82209 8.27240 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036143 B = 0.003505 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.522561 B = 7986.552401 C = 8321.730413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.068 3.932 3 H 0.044 0.956 4 C -0.122 4.122 5 C -0.105 4.105 6 H 0.135 0.865 7 C 0.496 3.504 8 O -0.520 6.520 9 N -0.650 5.650 10 C 0.346 3.654 11 C -0.311 4.311 12 C 0.116 3.884 13 C -0.482 4.482 14 H 0.088 0.912 15 C 0.033 3.967 16 N -0.821 5.821 17 Si 0.993 3.007 18 H -0.253 1.253 19 H -0.266 1.266 20 H -0.265 1.265 21 C -0.241 4.241 22 C 0.095 3.905 23 N -0.576 5.576 24 C -0.137 4.137 25 C 0.053 3.947 26 O -0.393 6.393 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.425 0.575 33 H 0.124 0.876 34 H 0.291 0.709 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.781 -14.390 2.165 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 H 0.062 0.938 4 C -0.160 4.160 5 C -0.126 4.126 6 H 0.152 0.848 7 C 0.283 3.717 8 O -0.393 6.393 9 N -0.298 5.298 10 C 0.118 3.882 11 C -0.337 4.337 12 C 0.108 3.892 13 C -0.513 4.513 14 H 0.106 0.894 15 C -0.183 4.183 16 N -0.447 5.447 17 Si 0.813 3.187 18 H -0.177 1.177 19 H -0.191 1.191 20 H -0.190 1.190 21 C -0.265 4.265 22 C -0.056 4.056 23 N -0.296 5.296 24 C -0.175 4.175 25 C -0.024 4.024 26 O -0.313 6.313 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.263 0.737 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.131 0.869 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -7.459 -13.788 2.200 15.830 hybrid contribution 2.091 0.934 -0.344 2.316 sum -5.368 -12.854 1.856 14.053 Atomic orbital electron populations 1.21712 0.91811 1.03343 1.02481 1.22361 0.96163 0.95358 0.85056 0.93843 1.21982 0.92883 1.02704 0.98425 1.21568 0.97502 0.91032 1.02515 0.84774 1.21632 0.81671 0.92822 0.75569 1.90726 1.57409 1.45385 1.45786 1.43506 1.08225 1.05696 1.72397 1.18315 0.88902 0.85723 0.95286 1.21440 0.92935 0.98169 1.21167 1.18019 0.94482 0.90847 0.85836 1.19923 0.91873 1.00528 1.38938 0.89433 1.26917 1.05247 0.94819 0.91316 1.69822 1.38906 1.08623 1.27357 0.84989 0.75446 0.79187 0.79071 1.17651 1.19100 1.18984 1.22272 0.93299 1.00889 1.10042 1.22162 0.94143 0.92507 0.96834 1.67295 1.38370 0.99259 1.24675 1.22201 1.02462 1.01124 0.91684 1.22671 0.80937 0.98527 1.00258 1.87842 1.21408 1.77937 1.44119 0.92664 0.90510 0.90478 0.91023 0.87663 0.73693 0.85835 0.89834 0.86251 0.84615 0.86876 0.88688 0.86607 0.96759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.56 71.98 0.69 -2.36 16 2 C 0.07 1.89 2.97 30.62 0.09 1.98 16 3 H 0.04 1.61 5.82 -2.39 -0.01 1.60 16 4 C -0.12 -2.75 4.56 30.68 0.14 -2.61 16 5 C -0.11 -2.31 3.04 -11.42 -0.03 -2.35 16 6 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 7 C 0.50 16.96 5.77 87.66 0.51 17.47 16 8 O -0.52 -22.97 12.15 -3.01 -0.04 -23.01 16 9 N -0.65 -22.70 5.22 -308.67 -1.61 -24.32 16 10 C 0.35 16.12 7.40 132.76 0.98 17.11 16 11 C -0.31 -14.87 9.73 22.99 0.22 -14.65 16 12 C 0.12 6.22 5.60 -21.12 -0.12 6.10 16 13 C -0.48 -24.81 9.14 23.52 0.21 -24.60 16 14 H 0.09 4.23 7.87 -2.91 -0.02 4.21 16 15 C 0.03 1.60 5.31 85.29 0.45 2.05 16 16 N -0.82 -41.79 10.70 21.84 0.23 -41.56 16 17 Si 0.99 36.22 29.57 68.60 2.03 38.25 16 18 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 19 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 20 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 21 C -0.24 -13.02 8.77 22.84 0.20 -12.82 16 22 C 0.09 4.90 11.15 84.50 0.94 5.84 16 23 N -0.58 -29.88 7.89 -193.54 -1.53 -31.41 16 24 C -0.14 -2.45 5.57 30.68 0.17 -2.28 16 25 C 0.05 1.29 6.62 72.01 0.48 1.77 16 26 O -0.39 -10.98 10.41 -148.98 -1.55 -12.53 16 27 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.07 1.75 8.02 -2.38 -0.02 1.73 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.42 10.88 8.25 -92.70 -0.77 10.12 16 33 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 34 H 0.29 13.29 8.29 -92.71 -0.77 12.52 16 35 H 0.12 6.60 6.11 -2.91 -0.02 6.58 16 36 H 0.14 6.39 8.06 -2.91 -0.02 6.37 16 37 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.40 7.62 -2.39 -0.02 1.38 16 39 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.01 0.45 7.38 -2.39 -0.02 0.44 16 Total: -1.00 -70.44 324.91 2.77 -67.68 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: 0.29 Total: 36.22 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.94 Total: -9.33 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -2.91 Total: -97.29 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.59 Total: -35.53 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Total: -70.44 2.77 -67.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540655922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.413 kcal (2) G-P(sol) polarization free energy of solvation -70.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds