Wall clock time and date at job start Tue Mar 31 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.54851 * 2 1 4 4 C 1.54997 * 110.61974 * 237.11378 * 2 1 3 5 5 C 1.54812 * 102.09125 * 204.47292 * 4 2 1 6 6 H 1.09002 * 110.48703 * 139.55876 * 5 4 2 7 7 C 1.52997 * 110.48852 * 262.20782 * 5 4 2 8 8 C 1.54100 * 104.18705 * 20.88417 * 5 4 2 9 9 H 1.09001 * 109.87526 * 121.60344 * 8 5 4 10 10 C 1.50698 * 109.87778 * 242.60090 * 8 5 4 11 11 O 1.21276 * 119.99933 * 115.00235 * 10 8 5 12 12 N 1.34773 * 120.00324 * 295.00552 * 10 8 5 13 13 C 1.39476 * 120.00141 * 185.40850 * 12 10 8 14 14 C 1.38607 * 119.57826 * 174.30939 * 13 12 10 15 15 C 1.40807 * 118.78938 * 180.24345 * 14 13 12 16 16 C 1.41543 * 120.99221 * 179.72698 * 15 14 13 17 17 H 1.07999 * 119.99858 * 20.87852 * 16 15 14 18 18 C 1.40036 * 119.99962 * 200.87585 * 16 15 14 19 19 N 1.30741 * 120.00208 * 33.10906 * 18 16 15 20 20 Si 1.86806 * 119.99717 * 213.11255 * 18 16 15 21 21 H 1.48503 * 109.46885 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.46972 * 59.99716 * 20 18 16 23 23 H 1.48497 * 109.46864 * 299.99584 * 20 18 16 24 24 C 1.41167 * 118.00914 * 359.46323 * 15 14 13 25 25 C 1.37591 * 119.01754 * 0.26725 * 24 15 14 26 26 N 1.32079 * 121.10675 * 0.02562 * 25 24 15 27 27 O 1.43738 * 107.29540 * 2.02545 * 8 5 4 28 28 H 1.09009 * 109.46683 * 182.88535 * 1 2 3 29 29 H 1.09001 * 109.47121 * 302.88040 * 1 2 3 30 30 H 1.08994 * 109.47438 * 62.88800 * 1 2 3 31 31 H 1.09003 * 110.90315 * 86.27778 * 4 2 1 32 32 H 1.08991 * 110.90770 * 322.67375 * 4 2 1 33 33 H 1.08999 * 109.46991 * 174.76924 * 7 5 4 34 34 H 1.09007 * 109.46841 * 294.76478 * 7 5 4 35 35 H 1.08997 * 109.47315 * 54.76534 * 7 5 4 36 36 H 0.97002 * 119.99780 * 5.40052 * 12 10 8 37 37 H 1.08000 * 120.60181 * 359.97438 * 14 13 12 38 38 H 0.97006 * 119.99533 * 5.79969 * 19 18 16 39 39 H 1.08002 * 120.49153 * 180.24857 * 24 15 14 40 40 H 1.08000 * 119.44228 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0758 -0.7877 -1.2182 5 6 3.4795 -1.2156 -0.7251 6 1 3.6976 -2.2376 -1.0351 7 6 4.5479 -0.2554 -1.2518 8 6 3.3839 -1.1265 0.8103 9 1 3.6071 -2.0975 1.2525 10 6 4.3537 -0.0942 1.3250 11 8 3.9404 0.9090 1.8670 12 7 5.6801 -0.2857 1.1831 13 6 6.5798 0.6119 1.7577 14 6 7.9389 0.3444 1.7085 15 6 8.8320 1.2593 2.2984 16 6 10.2285 1.0296 2.2803 17 1 10.6558 0.3582 1.5502 18 6 11.0561 1.6728 3.2089 19 7 10.6128 1.9297 4.4118 20 14 12.7933 2.1639 2.7290 21 1 13.4571 2.8247 3.8814 22 1 12.7425 3.1049 1.5813 23 1 13.5611 0.9529 2.3426 24 6 8.2932 2.4154 2.9035 25 6 6.9294 2.5978 2.8978 26 7 6.1249 1.7121 2.3385 27 8 2.0385 -0.7368 1.1328 28 1 -0.3633 -1.0265 0.0517 29 1 -0.3633 0.5579 0.8630 30 1 -0.3634 0.4683 -0.9147 31 1 2.1509 -0.1447 -2.0952 32 1 1.4550 -1.6586 -1.4281 33 1 5.5147 -0.5159 -0.8210 34 1 4.6016 -0.3319 -2.3378 35 1 4.2886 0.7656 -0.9718 36 1 6.0092 -1.0479 0.6814 37 1 8.3059 -0.5517 1.2302 38 1 9.7431 1.6012 4.6886 39 1 8.9418 3.1457 3.3643 40 1 6.5099 3.4799 3.3583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548828527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:41 Heat of formation + Delta-G solvation = -47.454802 kcal Electronic energy + Delta-G solvation = -23205.258988 eV Core-core repulsion = 19791.930801 eV Total energy + Delta-G solvation = -3413.328188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80551 -38.94514 -37.47264 -34.86060 -34.20377 -33.12068 -32.15529 -30.55867 -28.83020 -26.94038 -26.63486 -25.72583 -22.70707 -21.98776 -21.25791 -20.80041 -19.61346 -18.30551 -17.05288 -16.69265 -16.28166 -15.70151 -14.85756 -14.70187 -14.44589 -14.41759 -14.13676 -13.81153 -13.45673 -13.03327 -12.87496 -12.70515 -12.58249 -12.40326 -12.22047 -12.08606 -11.79002 -11.58617 -11.25769 -11.10846 -11.04374 -10.79396 -10.53685 -10.44188 -10.24808 -10.06138 -9.68974 -9.14635 -9.10022 -8.26111 -7.78109 -7.43210 -7.11162 -4.71191 2.42496 2.77342 3.08442 3.15135 3.28151 3.34967 3.40858 3.80319 3.91325 4.25664 4.46661 4.52600 4.68332 4.80623 4.99054 5.17024 5.19625 5.32827 5.38632 5.49038 5.51793 5.54046 5.61428 5.75169 5.86284 5.90009 5.94028 6.01918 6.18508 6.45908 6.48250 6.62986 6.74329 6.78683 7.25166 7.28965 7.45887 7.60652 7.83118 7.98301 8.18078 8.53292 8.66358 8.77744 9.59875 9.83901 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.039296 B = 0.003464 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.363199 B = 8082.034459 C = 8458.959074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 H 0.075 0.925 4 C -0.145 4.145 5 C -0.116 4.116 6 H 0.094 0.906 7 C -0.162 4.162 8 C 0.063 3.937 9 H 0.116 0.884 10 C 0.485 3.515 11 O -0.462 6.462 12 N -0.661 5.661 13 C 0.361 3.639 14 C -0.315 4.315 15 C 0.131 3.869 16 C -0.517 4.517 17 H 0.080 0.920 18 C 0.046 3.954 19 N -0.772 5.772 20 Si 1.063 2.937 21 H -0.273 1.273 22 H -0.272 1.272 23 H -0.274 1.274 24 C -0.286 4.286 25 C 0.127 3.873 26 N -0.565 5.565 27 O -0.342 6.342 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.406 0.594 37 H 0.100 0.900 38 H 0.301 0.699 39 H 0.110 0.890 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.412 -6.765 -10.494 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 H 0.093 0.907 4 C -0.183 4.183 5 C -0.135 4.135 6 H 0.112 0.888 7 C -0.220 4.220 8 C 0.001 3.999 9 H 0.134 0.866 10 C 0.268 3.732 11 O -0.330 6.330 12 N -0.311 5.311 13 C 0.135 3.865 14 C -0.341 4.341 15 C 0.123 3.877 16 C -0.546 4.546 17 H 0.098 0.902 18 C -0.180 4.180 19 N -0.393 5.393 20 Si 0.886 3.114 21 H -0.197 1.197 22 H -0.197 1.197 23 H -0.200 1.200 24 C -0.309 4.309 25 C -0.024 4.024 26 N -0.285 5.285 27 O -0.260 6.260 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.243 0.757 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.543 -5.157 -9.251 14.944 hybrid contribution -0.085 -1.359 -0.933 1.651 sum -10.628 -6.516 -10.184 16.097 Atomic orbital electron populations 1.21743 0.93038 1.02760 1.02511 1.23207 0.95145 0.96083 0.84482 0.90663 1.23269 0.95296 1.00848 0.98855 1.22475 0.96588 1.01415 0.93029 0.88789 1.22272 0.98736 0.99584 1.01369 1.22829 0.84224 0.97402 0.95487 0.86623 1.21102 0.82947 0.88514 0.80590 1.90797 1.76978 1.27049 1.38186 1.43864 1.05493 1.27948 1.53804 1.18075 0.86200 0.89062 0.93186 1.21042 0.90769 1.03535 1.18794 1.17542 0.92952 0.89213 0.88003 1.20531 0.91637 1.25784 1.16647 0.90199 1.27124 1.06750 0.91865 0.92229 1.70434 1.21353 1.30766 1.16772 0.83669 0.72774 0.77823 0.77117 1.19722 1.19747 1.19950 1.21953 0.95501 1.00669 1.12796 1.21815 0.90093 0.95748 0.94790 1.67288 1.38671 1.03952 1.18567 1.88956 1.24314 1.72905 1.39799 0.91865 0.91689 0.91155 0.89908 0.90202 0.90859 0.91869 0.91895 0.75712 0.88173 0.88580 0.87157 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.65 37.16 0.36 -1.04 16 2 C 0.07 0.85 3.88 -25.68 -0.10 0.75 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.15 -1.38 6.15 -24.72 -0.15 -1.54 16 5 C -0.12 -1.20 3.64 -89.09 -0.32 -1.53 16 6 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 7 C -0.16 -1.89 7.83 37.16 0.29 -1.60 16 8 C 0.06 0.86 3.89 -27.31 -0.11 0.75 16 9 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 10 C 0.48 8.96 5.49 -10.99 -0.06 8.90 16 11 O -0.46 -10.84 14.75 -14.02 -0.21 -11.04 16 12 N -0.66 -12.02 3.92 -11.49 -0.05 -12.07 16 13 C 0.36 8.42 7.41 -154.70 -1.15 7.27 16 14 C -0.32 -7.55 9.73 -38.47 -0.37 -7.92 16 15 C 0.13 3.41 5.36 -106.55 -0.57 2.84 16 16 C -0.52 -13.24 8.98 -37.65 -0.34 -13.57 16 17 H 0.08 1.97 8.02 -52.49 -0.42 1.55 16 18 C 0.05 1.12 4.81 -17.34 -0.08 1.04 16 19 N -0.77 -19.80 12.32 55.55 0.68 -19.12 16 20 Si 1.06 20.58 30.04 -169.99 -5.11 15.47 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 22 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 24 C -0.29 -7.34 8.26 -38.71 -0.32 -7.66 16 25 C 0.13 3.17 11.15 -17.68 -0.20 2.97 16 26 N -0.56 -14.45 7.86 -12.52 -0.10 -14.55 16 27 O -0.34 -5.26 10.45 -54.81 -0.57 -5.83 16 28 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 32 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 33 H 0.07 0.89 4.98 -51.93 -0.26 0.63 16 34 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.06 0.92 7.49 -51.93 -0.39 0.53 16 36 H 0.41 5.72 7.09 -40.82 -0.29 5.43 16 37 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 38 H 0.30 8.00 7.18 -40.82 -0.29 7.71 16 39 H 0.11 2.86 6.62 -52.49 -0.35 2.51 16 40 H 0.12 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 327.30 15.07 4.93 4.93 Total: -1.00 -32.21 327.30 -8.96 -41.17 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.43 Total: 11.36 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -3.12 Total: -10.32 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.54 Total: -45.74 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.78 Total: -16.88 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.11 Total: 15.47 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.21 -8.96 -41.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548828527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.287 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds