Wall clock time and date at job start Tue Mar 31 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.54851 * 2 1 4 4 C 1.54997 * 110.61974 * 237.11378 * 2 1 3 5 5 C 1.54812 * 102.09125 * 204.47292 * 4 2 1 6 6 H 1.09002 * 110.48703 * 139.55876 * 5 4 2 7 7 C 1.52997 * 110.48852 * 262.20782 * 5 4 2 8 8 C 1.54100 * 104.18705 * 20.88417 * 5 4 2 9 9 H 1.09001 * 109.87526 * 121.60344 * 8 5 4 10 10 C 1.50698 * 109.87778 * 242.60090 * 8 5 4 11 11 O 1.21276 * 119.99933 * 115.00235 * 10 8 5 12 12 N 1.34773 * 120.00324 * 295.00552 * 10 8 5 13 13 C 1.39476 * 120.00141 * 185.40850 * 12 10 8 14 14 C 1.38607 * 119.57826 * 174.30939 * 13 12 10 15 15 C 1.40807 * 118.78938 * 180.24345 * 14 13 12 16 16 C 1.41543 * 120.99221 * 179.72698 * 15 14 13 17 17 H 1.07999 * 119.99858 * 20.87852 * 16 15 14 18 18 C 1.40036 * 119.99962 * 200.87585 * 16 15 14 19 19 N 1.30741 * 120.00208 * 33.10906 * 18 16 15 20 20 Si 1.86806 * 119.99717 * 213.11255 * 18 16 15 21 21 H 1.48503 * 109.46885 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.46972 * 59.99716 * 20 18 16 23 23 H 1.48497 * 109.46864 * 299.99584 * 20 18 16 24 24 C 1.41167 * 118.00914 * 359.46323 * 15 14 13 25 25 C 1.37591 * 119.01754 * 0.26725 * 24 15 14 26 26 N 1.32079 * 121.10675 * 0.02562 * 25 24 15 27 27 O 1.43738 * 107.29540 * 2.02545 * 8 5 4 28 28 H 1.09009 * 109.46683 * 182.88535 * 1 2 3 29 29 H 1.09001 * 109.47121 * 302.88040 * 1 2 3 30 30 H 1.08994 * 109.47438 * 62.88800 * 1 2 3 31 31 H 1.09003 * 110.90315 * 86.27778 * 4 2 1 32 32 H 1.08991 * 110.90770 * 322.67375 * 4 2 1 33 33 H 1.08999 * 109.46991 * 174.76924 * 7 5 4 34 34 H 1.09007 * 109.46841 * 294.76478 * 7 5 4 35 35 H 1.08997 * 109.47315 * 54.76534 * 7 5 4 36 36 H 0.97002 * 119.99780 * 5.40052 * 12 10 8 37 37 H 1.08000 * 120.60181 * 359.97438 * 14 13 12 38 38 H 0.97006 * 119.99533 * 5.79969 * 19 18 16 39 39 H 1.08002 * 120.49153 * 180.24857 * 24 15 14 40 40 H 1.08000 * 119.44228 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0758 -0.7877 -1.2182 5 6 3.4795 -1.2156 -0.7251 6 1 3.6976 -2.2376 -1.0351 7 6 4.5479 -0.2554 -1.2518 8 6 3.3839 -1.1265 0.8103 9 1 3.6071 -2.0975 1.2525 10 6 4.3537 -0.0942 1.3250 11 8 3.9404 0.9090 1.8670 12 7 5.6801 -0.2857 1.1831 13 6 6.5798 0.6119 1.7577 14 6 7.9389 0.3444 1.7085 15 6 8.8320 1.2593 2.2984 16 6 10.2285 1.0296 2.2803 17 1 10.6558 0.3582 1.5502 18 6 11.0561 1.6728 3.2089 19 7 10.6128 1.9297 4.4118 20 14 12.7933 2.1639 2.7290 21 1 13.4571 2.8247 3.8814 22 1 12.7425 3.1049 1.5813 23 1 13.5611 0.9529 2.3426 24 6 8.2932 2.4154 2.9035 25 6 6.9294 2.5978 2.8978 26 7 6.1249 1.7121 2.3385 27 8 2.0385 -0.7368 1.1328 28 1 -0.3633 -1.0265 0.0517 29 1 -0.3633 0.5579 0.8630 30 1 -0.3634 0.4683 -0.9147 31 1 2.1509 -0.1447 -2.0952 32 1 1.4550 -1.6586 -1.4281 33 1 5.5147 -0.5159 -0.8210 34 1 4.6016 -0.3319 -2.3378 35 1 4.2886 0.7656 -0.9718 36 1 6.0092 -1.0479 0.6814 37 1 8.3059 -0.5517 1.2302 38 1 9.7431 1.6012 4.6886 39 1 8.9418 3.1457 3.3643 40 1 6.5099 3.4799 3.3583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548828527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:41 Heat of formation + Delta-G solvation = -66.689320 kcal Electronic energy + Delta-G solvation = -23206.093060 eV Core-core repulsion = 19791.930801 eV Total energy + Delta-G solvation = -3414.162259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.08347 -40.54236 -39.05920 -36.59360 -35.79967 -34.35376 -33.11534 -32.50203 -30.55310 -28.00441 -27.78390 -27.50356 -24.10496 -23.86557 -22.66185 -21.82269 -21.04503 -20.10811 -18.50160 -18.03039 -17.34329 -17.06917 -16.55327 -16.36196 -16.01132 -15.94380 -15.70441 -14.93926 -14.75597 -14.52987 -14.47805 -14.22802 -13.76340 -13.65432 -13.49401 -13.23722 -12.97281 -12.89592 -12.58862 -12.42156 -12.09275 -11.98310 -11.96623 -11.83696 -11.74441 -11.31929 -11.27769 -10.99191 -10.57598 -10.23853 -9.66841 -9.36362 -8.95865 -6.70751 0.58440 0.90249 1.51623 1.60425 1.78322 1.83857 1.94444 2.29290 2.65378 2.78813 3.37029 3.44339 3.55190 3.61704 3.95855 3.98964 4.09347 4.26402 4.33576 4.43383 4.51575 4.58998 4.66939 4.69736 4.74286 4.76165 4.84030 4.85053 4.96360 5.05527 5.11494 5.23567 5.27545 5.30229 5.40884 5.48677 5.67409 5.75954 6.03117 6.13304 6.45946 6.57455 6.76085 7.21817 7.73080 7.85509 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.039296 B = 0.003464 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.363199 B = 8082.034459 C = 8458.959074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.055 3.945 3 H 0.039 0.961 4 C -0.134 4.134 5 C -0.106 4.106 6 H 0.138 0.862 7 C -0.160 4.160 8 C 0.065 3.935 9 H 0.147 0.853 10 C 0.482 3.518 11 O -0.520 6.520 12 N -0.646 5.646 13 C 0.359 3.641 14 C -0.323 4.323 15 C 0.105 3.895 16 C -0.538 4.538 17 H 0.086 0.914 18 C 0.013 3.987 19 N -0.788 5.788 20 Si 1.117 2.883 21 H -0.272 1.272 22 H -0.264 1.264 23 H -0.251 1.251 24 C -0.300 4.300 25 C 0.120 3.880 26 N -0.589 5.589 27 O -0.367 6.367 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.022 0.978 36 H 0.427 0.573 37 H 0.123 0.877 38 H 0.284 0.716 39 H 0.100 0.900 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.420 -9.036 -12.820 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.002 4.002 3 H 0.057 0.943 4 C -0.171 4.171 5 C -0.125 4.125 6 H 0.156 0.844 7 C -0.218 4.218 8 C 0.004 3.996 9 H 0.164 0.836 10 C 0.268 3.732 11 O -0.392 6.392 12 N -0.298 5.298 13 C 0.131 3.869 14 C -0.348 4.348 15 C 0.097 3.903 16 C -0.566 4.566 17 H 0.104 0.896 18 C -0.208 4.208 19 N -0.409 5.409 20 Si 0.933 3.067 21 H -0.196 1.196 22 H -0.189 1.189 23 H -0.174 1.174 24 C -0.324 4.324 25 C -0.032 4.032 26 N -0.310 5.310 27 O -0.285 6.285 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.042 0.958 36 H 0.268 0.732 37 H 0.141 0.859 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.577 -7.489 -11.611 17.400 hybrid contribution -0.181 -0.647 -0.213 0.705 sum -10.758 -8.136 -11.824 17.937 Atomic orbital electron populations 1.21748 0.91077 1.03654 1.03048 1.23387 0.96765 0.94660 0.85373 0.94277 1.23280 0.94753 1.01534 0.97548 1.22569 0.96615 1.03345 0.89961 0.84394 1.22239 0.98697 0.97661 1.03163 1.23061 0.82264 0.96214 0.98094 0.83562 1.22214 0.83193 0.88717 0.79032 1.90768 1.77822 1.29795 1.40815 1.43858 1.05148 1.27563 1.53185 1.18375 0.87162 0.89010 0.92308 1.21249 0.90854 1.03969 1.18778 1.17925 0.93912 0.89807 0.88612 1.20806 0.91848 1.26753 1.17226 0.89558 1.28611 1.10181 0.90678 0.91334 1.70554 1.20674 1.31785 1.17840 0.83025 0.68193 0.78552 0.76964 1.19618 1.18866 1.17445 1.21906 0.95682 1.00977 1.13877 1.22098 0.90018 0.96368 0.94667 1.67401 1.39152 1.05012 1.19459 1.88944 1.24812 1.72988 1.41786 0.90446 0.93265 0.88828 0.88677 0.87365 0.91651 0.89180 0.95835 0.73231 0.85940 0.90373 0.88167 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.65 71.98 0.69 -1.79 16 2 C 0.06 1.32 3.88 31.28 0.12 1.44 16 3 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.13 -2.09 6.15 31.90 0.20 -1.89 16 5 C -0.11 -1.82 3.64 -9.80 -0.04 -1.85 16 6 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 7 C -0.16 -3.39 7.83 71.98 0.56 -2.83 16 8 C 0.07 1.66 3.89 30.22 0.12 1.78 16 9 H 0.15 2.83 8.14 -2.39 -0.02 2.81 16 10 C 0.48 17.81 5.49 87.66 0.48 18.29 16 11 O -0.52 -25.33 14.75 15.70 0.23 -25.10 16 12 N -0.65 -23.15 3.92 -308.66 -1.21 -24.37 16 13 C 0.36 16.93 7.41 132.76 0.98 17.91 16 14 C -0.32 -15.51 9.73 22.99 0.22 -15.28 16 15 C 0.11 5.60 5.36 -21.12 -0.11 5.48 16 16 C -0.54 -27.67 8.98 23.52 0.21 -27.46 16 17 H 0.09 4.22 8.02 -2.91 -0.02 4.19 16 18 C 0.01 0.62 4.81 85.29 0.41 1.03 16 19 N -0.79 -41.20 12.32 21.84 0.27 -40.93 16 20 Si 1.12 40.52 30.04 68.60 2.06 42.58 16 21 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 23 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 24 C -0.30 -16.03 8.26 22.84 0.19 -15.84 16 25 C 0.12 6.23 11.15 84.50 0.94 7.17 16 26 N -0.59 -31.13 7.86 -193.53 -1.52 -32.65 16 27 O -0.37 -10.96 10.45 -130.26 -1.36 -12.32 16 28 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.28 7.86 -2.39 -0.02 1.26 16 32 H 0.11 1.15 8.06 -2.39 -0.02 1.13 16 33 H 0.06 1.46 4.98 -2.39 -0.01 1.45 16 34 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.02 0.67 7.49 -2.39 -0.02 0.65 16 36 H 0.43 11.24 7.09 -92.71 -0.66 10.58 16 37 H 0.12 5.18 8.06 -2.91 -0.02 5.15 16 38 H 0.28 15.71 7.18 -92.70 -0.67 15.05 16 39 H 0.10 5.44 6.62 -2.91 -0.02 5.42 16 40 H 0.14 6.48 8.06 -2.91 -0.02 6.46 16 Total: -1.00 -74.17 327.30 3.96 -70.22 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.50 Total: 36.39 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.99 Total: -13.82 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -2.46 Total: -97.95 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -1.13 Total: -37.42 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.06 Total: 42.58 kcal Total: -74.17 3.96 -70.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548828527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.527 kcal (2) G-P(sol) polarization free energy of solvation -74.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds