Wall clock time and date at job start Tue Mar 31 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.55552 * 2 1 4 4 C 1.54998 * 110.61920 * 237.11386 * 2 1 3 5 5 C 1.54811 * 102.09538 * 204.47866 * 4 2 1 6 6 H 1.09007 * 110.48772 * 262.21067 * 5 4 2 7 7 C 1.52995 * 110.48855 * 139.56039 * 5 4 2 8 8 C 1.54100 * 104.18600 * 20.88086 * 5 4 2 9 9 H 1.09004 * 109.87275 * 121.60075 * 8 5 4 10 10 C 1.50695 * 109.88341 * 242.60656 * 8 5 4 11 11 O 1.21271 * 120.00630 * 114.69386 * 10 8 5 12 12 N 1.34776 * 119.99682 * 294.69655 * 10 8 5 13 13 C 1.39473 * 120.00034 * 185.37827 * 12 10 8 14 14 C 1.38600 * 119.58059 * 174.11497 * 13 12 10 15 15 C 1.40811 * 118.79462 * 180.24958 * 14 13 12 16 16 C 1.41542 * 120.99873 * 179.73012 * 15 14 13 17 17 H 1.07997 * 119.99571 * 19.16920 * 16 15 14 18 18 C 1.40028 * 120.00182 * 199.16440 * 16 15 14 19 19 N 1.30738 * 119.99890 * 35.64217 * 18 16 15 20 20 Si 1.86799 * 120.00297 * 215.64027 * 18 16 15 21 21 H 1.48492 * 109.47242 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47058 * 59.99705 * 20 18 16 23 23 H 1.48509 * 109.47019 * 300.00396 * 20 18 16 24 24 C 1.41178 * 118.00827 * 359.46038 * 15 14 13 25 25 C 1.37594 * 119.01328 * 0.27757 * 24 15 14 26 26 N 1.32086 * 121.11047 * 359.97438 * 25 24 15 27 27 O 1.43746 * 107.42021 * 2.10902 * 8 5 4 28 28 H 1.09000 * 109.47502 * 182.87949 * 1 2 3 29 29 H 1.08997 * 109.47174 * 302.88583 * 1 2 3 30 30 H 1.09005 * 109.47270 * 62.88027 * 1 2 3 31 31 H 1.09005 * 110.90139 * 86.28338 * 4 2 1 32 32 H 1.08992 * 110.91079 * 322.68205 * 4 2 1 33 33 H 1.09007 * 109.46828 * 305.23634 * 7 5 4 34 34 H 1.08996 * 109.47010 * 65.23245 * 7 5 4 35 35 H 1.08999 * 109.47168 * 185.23724 * 7 5 4 36 36 H 0.97001 * 120.00322 * 5.37874 * 12 10 8 37 37 H 1.08000 * 120.60267 * 0.02562 * 14 13 12 38 38 H 0.96997 * 120.00632 * 2.77473 * 19 18 16 39 39 H 1.07998 * 120.49715 * 180.29069 * 24 15 14 40 40 H 1.08003 * 119.44474 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7877 -1.2182 5 6 3.4794 -1.2158 -0.7252 6 1 4.2407 -0.5317 -1.1004 7 6 3.7854 -2.6503 -1.1604 8 6 3.3838 -1.1267 0.8102 9 1 3.6069 -2.0977 1.2524 10 6 4.3536 -0.0945 1.3251 11 8 3.9404 0.9113 1.8620 12 7 5.6802 -0.2891 1.1887 13 6 6.5795 0.6091 1.7630 14 6 7.9379 0.3369 1.7234 15 6 8.8306 1.2524 2.3130 16 6 10.2265 1.0181 2.3044 17 1 10.6524 0.3200 1.5989 18 6 11.0551 1.6913 3.2104 19 7 10.6291 1.9481 4.4194 20 14 12.7692 2.2226 2.6916 21 1 13.4385 2.9102 3.8248 22 1 12.6713 3.1509 1.5367 23 1 13.5605 1.0282 2.3008 24 6 8.2921 2.4140 2.9080 25 6 6.9290 2.6007 2.8933 26 7 6.1248 1.7147 2.3339 27 8 2.0385 -0.7388 1.1359 28 1 -0.3634 -1.0263 0.0516 29 1 -0.3633 0.5580 0.8630 30 1 -0.3634 0.4685 -0.9147 31 1 2.1510 -0.1446 -2.0951 32 1 1.4549 -1.6585 -1.4283 33 1 2.9903 -3.3118 -0.8161 34 1 3.8493 -2.6943 -2.2476 35 1 4.7343 -2.9668 -0.7275 36 1 6.0097 -1.0538 0.6911 37 1 8.3048 -0.5629 1.2520 38 1 9.7549 1.6371 4.7020 39 1 8.9405 3.1452 3.3676 40 1 6.5096 3.4870 3.3461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548828528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:44 Heat of formation + Delta-G solvation = -60.632568 kcal Electronic energy + Delta-G solvation = -22904.270478 eV Core-core repulsion = 19490.370860 eV Total energy + Delta-G solvation = -3413.899619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57452 -38.96326 -37.47836 -34.76723 -34.07034 -33.33270 -32.20103 -30.56950 -28.94033 -27.13367 -26.61407 -25.72162 -22.23168 -21.92649 -21.26107 -20.93986 -19.73727 -18.26252 -17.57126 -16.63650 -16.05080 -15.55112 -14.78152 -14.63725 -14.41761 -14.25278 -14.18007 -14.07409 -13.43123 -13.15057 -13.00091 -12.74713 -12.55261 -12.39693 -12.28967 -12.11508 -11.77766 -11.58885 -11.34306 -11.27435 -10.96514 -10.86398 -10.54601 -10.44464 -10.29739 -10.09384 -9.78223 -9.11396 -9.07871 -8.26374 -7.78671 -7.46559 -7.12890 -4.71544 2.41949 2.78014 3.07562 3.14523 3.27481 3.35113 3.40266 3.80329 3.89566 4.25587 4.46574 4.50833 4.63304 4.85227 4.99745 5.10633 5.16996 5.25285 5.38987 5.40769 5.51091 5.52062 5.61712 5.69436 5.76246 5.88559 5.91693 5.98239 6.02887 6.46425 6.49514 6.63434 6.73982 6.78502 7.25433 7.29310 7.44652 7.60727 7.83419 7.97510 8.18753 8.53777 8.65541 8.77644 9.60638 9.80690 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034251 B = 0.003386 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.300407 B = 8267.850250 C = 8792.479303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.067 3.933 3 H 0.076 0.924 4 C -0.144 4.144 5 C -0.120 4.120 6 H 0.089 0.911 7 C -0.143 4.143 8 C 0.066 3.934 9 H 0.117 0.883 10 C 0.478 3.522 11 O -0.462 6.462 12 N -0.660 5.660 13 C 0.361 3.639 14 C -0.316 4.316 15 C 0.130 3.870 16 C -0.517 4.517 17 H 0.081 0.919 18 C 0.047 3.953 19 N -0.767 5.767 20 Si 1.064 2.936 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.274 1.274 24 C -0.288 4.288 25 C 0.128 3.872 26 N -0.567 5.567 27 O -0.342 6.342 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.405 0.595 37 H 0.100 0.900 38 H 0.302 0.698 39 H 0.110 0.890 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.626 -7.494 -10.492 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.010 3.990 3 H 0.094 0.906 4 C -0.182 4.182 5 C -0.139 4.139 6 H 0.107 0.893 7 C -0.200 4.200 8 C 0.003 3.997 9 H 0.134 0.866 10 C 0.261 3.739 11 O -0.330 6.330 12 N -0.308 5.308 13 C 0.135 3.865 14 C -0.342 4.342 15 C 0.122 3.878 16 C -0.546 4.546 17 H 0.099 0.901 18 C -0.180 4.180 19 N -0.388 5.388 20 Si 0.887 3.113 21 H -0.197 1.197 22 H -0.197 1.197 23 H -0.199 1.199 24 C -0.312 4.312 25 C -0.023 4.023 26 N -0.287 5.287 27 O -0.259 6.259 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.239 0.761 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.757 -5.873 -9.279 15.372 hybrid contribution -0.068 -1.332 -0.899 1.609 sum -10.825 -7.205 -10.178 16.513 Atomic orbital electron populations 1.21737 0.93007 1.02757 1.02521 1.23278 0.95230 0.96086 0.84442 0.90559 1.23276 0.95309 1.00888 0.98718 1.22535 0.98898 0.99234 0.93265 0.89305 1.21848 1.02108 0.94280 1.01798 1.22798 0.84154 0.97325 0.95379 0.86567 1.21272 0.83007 0.88560 0.81055 1.90794 1.77021 1.26903 1.38250 1.43501 1.05477 1.27701 1.54152 1.18061 0.86181 0.88971 0.93244 1.21015 0.90756 1.03529 1.18912 1.17533 0.92904 0.89308 0.88037 1.20531 0.91647 1.23842 1.18574 0.90111 1.27149 1.06679 0.91974 0.92178 1.70459 1.21305 1.31074 1.15981 0.83654 0.72767 0.77804 0.77092 1.19712 1.19678 1.19933 1.21933 0.95524 1.00673 1.13078 1.21810 0.90090 0.95739 0.94696 1.67289 1.38677 1.03858 1.18883 1.89037 1.24275 1.72928 1.39704 0.91870 0.91675 0.91150 0.90044 0.90021 0.91938 0.91807 0.91919 0.76058 0.88164 0.88526 0.87200 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.65 37.15 0.36 -1.03 16 2 C 0.07 0.83 3.88 -25.68 -0.10 0.74 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.14 -1.38 6.14 -24.72 -0.15 -1.54 16 5 C -0.12 -1.26 3.25 -89.09 -0.29 -1.55 16 6 H 0.09 1.01 7.68 -51.93 -0.40 0.61 16 7 C -0.14 -1.10 8.93 37.16 0.33 -0.77 16 8 C 0.07 0.91 3.55 -27.31 -0.10 0.81 16 9 H 0.12 1.37 7.69 -51.93 -0.40 0.97 16 10 C 0.48 9.01 6.84 -10.99 -0.08 8.93 16 11 O -0.46 -10.98 14.74 -14.00 -0.21 -11.19 16 12 N -0.66 -12.31 5.36 -11.49 -0.06 -12.37 16 13 C 0.36 8.58 7.41 -154.70 -1.15 7.43 16 14 C -0.32 -7.65 9.73 -38.48 -0.37 -8.02 16 15 C 0.13 3.41 5.39 -106.55 -0.57 2.83 16 16 C -0.52 -13.27 8.96 -37.65 -0.34 -13.61 16 17 H 0.08 2.00 8.04 -52.49 -0.42 1.58 16 18 C 0.05 1.14 4.76 -17.35 -0.08 1.06 16 19 N -0.77 -19.64 12.40 55.55 0.69 -18.95 16 20 Si 1.06 20.56 30.05 -169.99 -5.11 15.45 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 24 C -0.29 -7.45 8.28 -38.70 -0.32 -7.77 16 25 C 0.13 3.22 11.15 -17.68 -0.20 3.02 16 26 N -0.57 -14.70 7.86 -12.52 -0.10 -14.80 16 27 O -0.34 -5.28 10.48 -54.80 -0.57 -5.85 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.66 7.76 -51.93 -0.40 0.26 16 33 H 0.06 0.45 8.11 -51.92 -0.42 0.03 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.40 5.81 8.70 -40.82 -0.36 5.46 16 37 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.30 8.00 7.17 -40.82 -0.29 7.71 16 39 H 0.11 2.85 6.59 -52.49 -0.35 2.50 16 40 H 0.12 2.79 8.06 -52.48 -0.42 2.36 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -32.52 334.98 -9.01 -41.53 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -5.64 Total: 10.60 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -3.05 Total: -9.46 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.53 Total: -46.13 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.78 Total: -17.04 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.11 Total: 15.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.52 -9.01 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548828528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.102 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds