Wall clock time and date at job start Tue Mar 31 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.55552 * 2 1 4 4 C 1.54998 * 110.61920 * 237.11386 * 2 1 3 5 5 C 1.54811 * 102.09538 * 204.47866 * 4 2 1 6 6 H 1.09007 * 110.48772 * 262.21067 * 5 4 2 7 7 C 1.52995 * 110.48855 * 139.56039 * 5 4 2 8 8 C 1.54100 * 104.18600 * 20.88086 * 5 4 2 9 9 H 1.09004 * 109.87275 * 121.60075 * 8 5 4 10 10 C 1.50695 * 109.88341 * 242.60656 * 8 5 4 11 11 O 1.21271 * 120.00630 * 114.69386 * 10 8 5 12 12 N 1.34776 * 119.99682 * 294.69655 * 10 8 5 13 13 C 1.39473 * 120.00034 * 185.37827 * 12 10 8 14 14 C 1.38600 * 119.58059 * 174.11497 * 13 12 10 15 15 C 1.40811 * 118.79462 * 180.24958 * 14 13 12 16 16 C 1.41542 * 120.99873 * 179.73012 * 15 14 13 17 17 H 1.07997 * 119.99571 * 19.16920 * 16 15 14 18 18 C 1.40028 * 120.00182 * 199.16440 * 16 15 14 19 19 N 1.30738 * 119.99890 * 35.64217 * 18 16 15 20 20 Si 1.86799 * 120.00297 * 215.64027 * 18 16 15 21 21 H 1.48492 * 109.47242 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47058 * 59.99705 * 20 18 16 23 23 H 1.48509 * 109.47019 * 300.00396 * 20 18 16 24 24 C 1.41178 * 118.00827 * 359.46038 * 15 14 13 25 25 C 1.37594 * 119.01328 * 0.27757 * 24 15 14 26 26 N 1.32086 * 121.11047 * 359.97438 * 25 24 15 27 27 O 1.43746 * 107.42021 * 2.10902 * 8 5 4 28 28 H 1.09000 * 109.47502 * 182.87949 * 1 2 3 29 29 H 1.08997 * 109.47174 * 302.88583 * 1 2 3 30 30 H 1.09005 * 109.47270 * 62.88027 * 1 2 3 31 31 H 1.09005 * 110.90139 * 86.28338 * 4 2 1 32 32 H 1.08992 * 110.91079 * 322.68205 * 4 2 1 33 33 H 1.09007 * 109.46828 * 305.23634 * 7 5 4 34 34 H 1.08996 * 109.47010 * 65.23245 * 7 5 4 35 35 H 1.08999 * 109.47168 * 185.23724 * 7 5 4 36 36 H 0.97001 * 120.00322 * 5.37874 * 12 10 8 37 37 H 1.08000 * 120.60267 * 0.02562 * 14 13 12 38 38 H 0.96997 * 120.00632 * 2.77473 * 19 18 16 39 39 H 1.07998 * 120.49715 * 180.29069 * 24 15 14 40 40 H 1.08003 * 119.44474 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7877 -1.2182 5 6 3.4794 -1.2158 -0.7252 6 1 4.2407 -0.5317 -1.1004 7 6 3.7854 -2.6503 -1.1604 8 6 3.3838 -1.1267 0.8102 9 1 3.6069 -2.0977 1.2524 10 6 4.3536 -0.0945 1.3251 11 8 3.9404 0.9113 1.8620 12 7 5.6802 -0.2891 1.1887 13 6 6.5795 0.6091 1.7630 14 6 7.9379 0.3369 1.7234 15 6 8.8306 1.2524 2.3130 16 6 10.2265 1.0181 2.3044 17 1 10.6524 0.3200 1.5989 18 6 11.0551 1.6913 3.2104 19 7 10.6291 1.9481 4.4194 20 14 12.7692 2.2226 2.6916 21 1 13.4385 2.9102 3.8248 22 1 12.6713 3.1509 1.5367 23 1 13.5605 1.0282 2.3008 24 6 8.2921 2.4140 2.9080 25 6 6.9290 2.6007 2.8933 26 7 6.1248 1.7147 2.3339 27 8 2.0385 -0.7388 1.1359 28 1 -0.3634 -1.0263 0.0516 29 1 -0.3633 0.5580 0.8630 30 1 -0.3634 0.4685 -0.9147 31 1 2.1510 -0.1446 -2.0951 32 1 1.4549 -1.6585 -1.4283 33 1 2.9903 -3.3118 -0.8161 34 1 3.8493 -2.6943 -2.2476 35 1 4.7343 -2.9668 -0.7275 36 1 6.0097 -1.0538 0.6911 37 1 8.3048 -0.5629 1.2520 38 1 9.7549 1.6371 4.7020 39 1 8.9405 3.1452 3.3676 40 1 6.5096 3.4870 3.3461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548828528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:43 Heat of formation + Delta-G solvation = -80.308090 kcal Electronic energy + Delta-G solvation = -22905.123673 eV Core-core repulsion = 19490.370860 eV Total energy + Delta-G solvation = -3414.752813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.87939 -40.56032 -39.10180 -36.57455 -35.61447 -34.48820 -33.15247 -32.52213 -30.67727 -28.03580 -27.77898 -27.52545 -23.93420 -23.69900 -22.36696 -21.98676 -21.18806 -20.08885 -18.90965 -18.09171 -17.31154 -16.87048 -16.54364 -16.37459 -15.93370 -15.78904 -15.60914 -15.21724 -14.84965 -14.49988 -14.30282 -14.24824 -13.80377 -13.64598 -13.47828 -13.06255 -13.00752 -12.92197 -12.57748 -12.40769 -12.22235 -11.99485 -11.87584 -11.82306 -11.66190 -11.55044 -11.36902 -10.97462 -10.55567 -10.24801 -9.69087 -9.39861 -9.00181 -6.71652 0.56772 0.90462 1.50899 1.58423 1.76142 1.83660 1.91362 2.27694 2.63263 2.77249 3.37601 3.43210 3.54548 3.63475 3.89498 4.03439 4.08818 4.24652 4.34677 4.49044 4.50598 4.57820 4.68410 4.72586 4.73650 4.80044 4.84621 4.92125 5.01042 5.06670 5.17212 5.23068 5.29817 5.35524 5.39689 5.46958 5.66347 5.74206 6.01709 6.12033 6.44450 6.57130 6.74340 7.18413 7.72072 7.82164 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034251 B = 0.003386 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.300407 B = 8267.850250 C = 8792.479303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.054 3.946 3 H 0.043 0.957 4 C -0.134 4.134 5 C -0.114 4.114 6 H 0.077 0.923 7 C -0.139 4.139 8 C 0.072 3.928 9 H 0.143 0.857 10 C 0.473 3.527 11 O -0.518 6.518 12 N -0.646 5.646 13 C 0.357 3.643 14 C -0.324 4.324 15 C 0.104 3.896 16 C -0.537 4.537 17 H 0.087 0.913 18 C 0.014 3.986 19 N -0.782 5.782 20 Si 1.117 2.883 21 H -0.271 1.271 22 H -0.264 1.264 23 H -0.251 1.251 24 C -0.303 4.303 25 C 0.121 3.879 26 N -0.592 5.592 27 O -0.367 6.367 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.426 0.574 37 H 0.122 0.878 38 H 0.285 0.715 39 H 0.101 0.899 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 -9.445 -12.638 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.003 4.003 3 H 0.061 0.939 4 C -0.171 4.171 5 C -0.134 4.134 6 H 0.096 0.904 7 C -0.196 4.196 8 C 0.010 3.990 9 H 0.160 0.840 10 C 0.260 3.740 11 O -0.390 6.390 12 N -0.296 5.296 13 C 0.130 3.870 14 C -0.350 4.350 15 C 0.096 3.904 16 C -0.565 4.565 17 H 0.105 0.895 18 C -0.208 4.208 19 N -0.402 5.402 20 Si 0.933 3.067 21 H -0.195 1.195 22 H -0.188 1.188 23 H -0.174 1.174 24 C -0.327 4.327 25 C -0.030 4.030 26 N -0.313 5.313 27 O -0.285 6.285 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.264 0.736 37 H 0.140 0.860 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.687 -7.887 -11.456 17.540 hybrid contribution -0.188 -0.724 -0.220 0.779 sum -10.874 -8.611 -11.676 18.131 Atomic orbital electron populations 1.21742 0.90959 1.03631 1.03142 1.23471 0.96923 0.94718 0.85182 0.93897 1.23290 0.94710 1.01517 0.97579 1.22558 0.99268 1.01233 0.90301 0.90442 1.21856 1.02883 0.91946 1.02895 1.22966 0.82245 0.95905 0.97858 0.83989 1.22397 0.83271 0.88805 0.79544 1.90765 1.77851 1.29600 1.40788 1.43472 1.05171 1.27373 1.53579 1.18367 0.87148 0.88963 0.92500 1.21221 0.90818 1.03993 1.18923 1.17917 0.93860 0.89919 0.88668 1.20810 0.91834 1.24751 1.19104 0.89488 1.28638 1.10026 0.90813 0.91302 1.70580 1.20619 1.31997 1.17034 0.83016 0.68368 0.78429 0.76890 1.19527 1.18833 1.17435 1.21897 0.95715 1.00960 1.14107 1.22105 0.90028 0.96359 0.94537 1.67398 1.39194 1.04918 1.19813 1.89023 1.24700 1.73046 1.41697 0.90544 0.93131 0.88753 0.88644 0.87542 0.90877 0.90184 0.91193 0.73551 0.85962 0.90285 0.88071 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.65 71.98 0.69 -1.79 16 2 C 0.05 1.31 3.88 31.28 0.12 1.43 16 3 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.13 -2.19 6.14 31.90 0.20 -2.00 16 5 C -0.11 -2.11 3.25 -9.80 -0.03 -2.14 16 6 H 0.08 1.62 7.68 -2.38 -0.02 1.60 16 7 C -0.14 -1.58 8.93 71.98 0.64 -0.94 16 8 C 0.07 1.90 3.55 30.22 0.11 2.00 16 9 H 0.14 2.98 7.69 -2.38 -0.02 2.96 16 10 C 0.47 17.89 6.84 87.66 0.60 18.49 16 11 O -0.52 -25.48 14.74 15.71 0.23 -25.24 16 12 N -0.65 -23.77 5.36 -308.67 -1.65 -25.43 16 13 C 0.36 17.10 7.41 132.75 0.98 18.08 16 14 C -0.32 -15.69 9.73 22.99 0.22 -15.47 16 15 C 0.10 5.55 5.39 -21.11 -0.11 5.43 16 16 C -0.54 -27.59 8.96 23.52 0.21 -27.38 16 17 H 0.09 4.25 8.04 -2.91 -0.02 4.23 16 18 C 0.01 0.67 4.76 85.29 0.41 1.08 16 19 N -0.78 -40.64 12.40 21.84 0.27 -40.37 16 20 Si 1.12 40.31 30.05 68.60 2.06 42.38 16 21 H -0.27 -9.64 7.11 99.48 0.71 -8.94 16 22 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 23 H -0.25 -8.08 7.11 99.48 0.71 -7.38 16 24 C -0.30 -16.15 8.28 22.84 0.19 -15.96 16 25 C 0.12 6.30 11.15 84.50 0.94 7.24 16 26 N -0.59 -31.53 7.86 -193.52 -1.52 -33.05 16 27 O -0.37 -11.11 10.48 -130.27 -1.37 -12.47 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.11 1.26 7.76 -2.39 -0.02 1.24 16 33 H 0.07 0.72 8.11 -2.38 -0.02 0.70 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.43 11.52 8.70 -92.71 -0.81 10.72 16 37 H 0.12 5.22 8.06 -2.91 -0.02 5.20 16 38 H 0.29 15.66 7.17 -92.71 -0.66 14.99 16 39 H 0.10 5.46 6.59 -2.91 -0.02 5.44 16 40 H 0.14 6.52 8.06 -2.91 -0.02 6.50 16 Total: -1.00 -73.46 334.98 3.55 -69.91 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.35 Total: 36.18 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 5.17 Total: -11.91 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -2.90 Total: -98.84 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.13 Total: -37.71 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.06 Total: 42.38 kcal Total: -73.46 3.55 -69.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548828528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.397 kcal (2) G-P(sol) polarization free energy of solvation -73.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds