Wall clock time and date at job start Tue Mar 31 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.86616 * 2 1 4 4 C 1.54094 * 109.87780 * 238.99270 * 2 1 3 5 5 C 1.54815 * 104.18930 * 238.54437 * 4 2 1 6 6 H 1.09000 * 110.91019 * 97.31905 * 5 4 2 7 7 C 1.52998 * 110.90650 * 220.92744 * 5 4 2 8 8 C 1.55003 * 102.08729 * 339.11998 * 5 4 2 9 9 H 1.08999 * 110.61844 * 278.51917 * 8 5 4 10 10 C 1.50708 * 110.61202 * 155.52343 * 8 5 4 11 11 O 1.21276 * 119.99640 * 249.47678 * 10 8 5 12 12 N 1.34773 * 119.99775 * 69.47862 * 10 8 5 13 13 C 1.39470 * 119.99812 * 174.78944 * 12 10 8 14 14 C 1.38596 * 119.58109 * 184.95360 * 13 12 10 15 15 C 1.40815 * 118.79385 * 179.97438 * 14 13 12 16 16 C 1.41543 * 120.99375 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99946 * 152.32778 * 16 15 14 18 18 C 1.40031 * 119.99771 * 332.33271 * 16 15 14 19 19 N 1.30737 * 120.00482 * 349.38263 * 18 16 15 20 20 Si 1.86805 * 119.99604 * 169.38443 * 18 16 15 21 21 H 1.48502 * 109.46893 * 89.99929 * 20 18 16 22 22 H 1.48502 * 109.46909 * 209.99722 * 20 18 16 23 23 H 1.48498 * 109.47344 * 329.99693 * 20 18 16 24 24 C 1.41171 * 118.00756 * 0.02562 * 15 14 13 25 25 C 1.37589 * 119.01979 * 359.97438 * 24 15 14 26 26 N 1.32089 * 121.10473 * 359.75019 * 25 24 15 27 27 O 1.43738 * 109.87897 * 121.16035 * 2 1 3 28 28 H 1.09004 * 109.46696 * 181.00654 * 1 2 3 29 29 H 1.08994 * 109.47418 * 301.00731 * 1 2 3 30 30 H 1.08996 * 109.47132 * 61.00911 * 1 2 3 31 31 H 1.08994 * 110.49231 * 357.22198 * 4 2 1 32 32 H 1.09000 * 110.48878 * 119.86989 * 4 2 1 33 33 H 1.08996 * 109.47659 * 58.54520 * 7 5 4 34 34 H 1.09007 * 109.46871 * 178.54611 * 7 5 4 35 35 H 1.08996 * 109.47203 * 298.54255 * 7 5 4 36 36 H 0.97000 * 120.00061 * 354.79518 * 12 10 8 37 37 H 1.07994 * 120.60342 * 0.02562 * 14 13 12 38 38 H 0.97003 * 120.00352 * 180.02562 * 19 18 16 39 39 H 1.08007 * 120.49128 * 179.97438 * 24 15 14 40 40 H 1.07997 * 119.44634 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0540 -0.7465 -1.2420 5 6 2.9196 -1.8906 -0.6601 6 1 2.3541 -2.8212 -0.6136 7 6 4.2021 -2.0732 -1.4742 8 6 3.2380 -1.3650 0.7629 9 1 4.0686 -0.6598 0.7347 10 6 3.5429 -2.5093 1.6952 11 8 2.7654 -2.7928 2.5817 12 7 4.6796 -3.2174 1.5436 13 6 5.0150 -4.2044 2.4700 14 6 6.2338 -4.8559 2.3646 15 6 6.5557 -5.8494 3.3092 16 6 7.7871 -6.5443 3.2452 17 1 8.2280 -6.9459 4.1456 18 6 8.4338 -6.7110 2.0144 19 7 7.8118 -6.4137 0.9035 20 14 10.1852 -7.3584 1.9597 21 1 10.1624 -8.8404 1.8669 22 1 10.8829 -6.7990 0.7741 23 1 10.9025 -6.9507 3.1943 24 6 5.6131 -6.1322 4.3213 25 6 4.4287 -5.4323 4.3448 26 7 4.1669 -4.5036 3.4427 27 8 2.0188 -0.6994 1.1567 28 1 -0.3633 -1.0276 0.0181 29 1 -0.3634 0.5294 0.8807 30 1 -0.3633 0.4981 -0.8989 31 1 1.2247 -1.1524 -1.8213 32 1 2.6619 -0.0834 -1.8575 33 1 4.7685 -1.1420 -1.4738 34 1 4.8048 -2.8653 -1.0299 35 1 3.9466 -2.3425 -2.4990 36 1 5.2644 -3.0404 0.7902 37 1 6.9243 -4.6057 1.5729 38 1 8.2596 -6.5295 0.0509 39 1 5.8185 -6.8868 5.0662 40 1 3.7024 -5.6434 5.1157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548828529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:46 Heat of formation + Delta-G solvation = -50.505874 kcal Electronic energy + Delta-G solvation = -23044.521421 eV Core-core repulsion = 19631.060929 eV Total energy + Delta-G solvation = -3413.460492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38921 -38.96226 -37.46250 -34.44117 -34.00757 -33.32333 -32.18468 -30.54483 -28.85869 -27.00864 -26.50977 -25.97554 -22.25917 -21.96809 -21.21769 -20.77957 -19.68724 -17.70388 -17.35072 -16.33847 -15.96643 -15.38102 -15.27493 -14.80483 -14.51062 -14.21605 -13.85600 -13.79044 -13.46257 -13.15942 -12.90305 -12.71144 -12.59228 -12.45586 -12.22360 -12.07564 -11.56443 -11.48052 -11.35796 -11.20024 -10.92433 -10.79409 -10.71402 -10.29502 -10.16963 -9.81686 -9.71908 -9.39252 -9.22429 -7.97769 -7.72893 -7.05513 -6.77766 -4.63707 2.52484 2.77998 3.00462 3.05084 3.13092 3.20961 3.42681 3.84707 4.06026 4.31862 4.58434 4.66946 4.70673 4.84017 5.01200 5.09550 5.17951 5.26519 5.42450 5.50749 5.54750 5.64247 5.66300 5.71416 5.89219 5.94345 6.01985 6.05425 6.09116 6.56414 6.60843 6.77373 6.83979 6.94798 7.09964 7.36392 7.44825 7.76942 7.92599 8.19014 8.41287 8.68842 8.74152 8.87623 9.66887 10.08953 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024201 B = 0.003956 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.714437 B = 7075.527599 C = 8055.071195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.068 3.932 3 H 0.069 0.931 4 C -0.146 4.146 5 C -0.116 4.116 6 H 0.091 0.909 7 C -0.148 4.148 8 C 0.064 3.936 9 H 0.092 0.908 10 C 0.503 3.497 11 O -0.459 6.459 12 N -0.655 5.655 13 C 0.336 3.664 14 C -0.237 4.237 15 C 0.144 3.856 16 C -0.456 4.456 17 H 0.081 0.919 18 C 0.077 3.923 19 N -0.796 5.796 20 Si 0.913 3.087 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.281 4.281 25 C 0.118 3.882 26 N -0.552 5.552 27 O -0.343 6.343 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.406 0.594 37 H 0.130 0.870 38 H 0.281 0.719 39 H 0.103 0.897 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 10.042 -8.872 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.010 3.990 3 H 0.087 0.913 4 C -0.184 4.184 5 C -0.135 4.135 6 H 0.109 0.891 7 C -0.206 4.206 8 C 0.002 3.998 9 H 0.110 0.890 10 C 0.285 3.715 11 O -0.327 6.327 12 N -0.304 5.304 13 C 0.112 3.888 14 C -0.262 4.262 15 C 0.136 3.864 16 C -0.488 4.488 17 H 0.100 0.900 18 C -0.141 4.141 19 N -0.422 5.422 20 Si 0.738 3.262 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.305 4.305 25 C -0.036 4.036 26 N -0.271 5.271 27 O -0.261 6.261 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.242 0.758 37 H 0.147 0.853 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.146 10.371 -8.228 14.596 hybrid contribution 2.012 -0.719 -0.826 2.291 sum -4.133 9.653 -9.054 13.865 Atomic orbital electron populations 1.21923 0.93628 1.03070 1.02143 1.22779 0.95412 0.95656 0.85113 0.91331 1.23095 1.00095 0.97185 0.97983 1.22684 0.97797 0.99796 0.93218 0.89052 1.21837 0.96040 1.02436 1.00255 1.23105 0.89922 0.93709 0.93051 0.89030 1.20131 0.82144 0.83417 0.85760 1.90801 1.45076 1.65587 1.31262 1.43424 1.23480 1.35887 1.27625 1.18193 0.91344 0.89556 0.89756 1.21578 0.96533 1.01575 1.06536 1.17574 0.91734 0.88184 0.88935 1.19560 1.03805 1.31103 0.94328 0.90042 1.25929 0.99607 0.93518 0.95093 1.69746 1.37087 1.36597 0.98788 0.86226 0.81490 0.79556 0.78960 1.19412 1.20071 1.18434 1.21949 0.96783 1.06342 1.05379 1.21783 0.94922 0.91670 0.95263 1.67228 1.33552 1.20494 1.05866 1.89034 1.38328 1.66644 1.32069 0.91706 0.91845 0.91403 0.90063 0.90252 0.91894 0.91665 0.91479 0.75785 0.85280 0.90833 0.87891 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.36 37.16 0.35 -1.14 16 2 C 0.07 0.76 4.06 -26.16 -0.11 0.66 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.15 -1.37 6.23 -25.20 -0.16 -1.52 16 5 C -0.12 -1.37 3.15 -88.61 -0.28 -1.64 16 6 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 7 C -0.15 -1.43 9.00 37.16 0.33 -1.10 16 8 C 0.06 0.94 3.22 -26.82 -0.09 0.86 16 9 H 0.09 1.14 8.03 -51.93 -0.42 0.73 16 10 C 0.50 10.06 7.16 -10.98 -0.08 9.98 16 11 O -0.46 -11.43 14.83 -13.48 -0.20 -11.63 16 12 N -0.66 -13.06 5.39 -11.49 -0.06 -13.12 16 13 C 0.34 8.24 7.42 -154.70 -1.15 7.09 16 14 C -0.24 -5.98 8.59 -38.48 -0.33 -6.31 16 15 C 0.14 3.78 5.58 -106.55 -0.59 3.19 16 16 C -0.46 -11.67 9.13 -37.65 -0.34 -12.01 16 17 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 18 C 0.08 1.83 5.29 -17.35 -0.09 1.74 16 19 N -0.80 -19.35 10.83 55.55 0.60 -18.75 16 20 Si 0.91 17.79 29.57 -169.99 -5.03 12.76 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 22 H -0.28 -5.22 7.11 56.52 0.40 -4.81 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 24 C -0.28 -6.92 9.90 -38.71 -0.38 -7.31 16 25 C 0.12 2.88 11.15 -17.68 -0.20 2.68 16 26 N -0.55 -14.41 7.85 -12.52 -0.10 -14.50 16 27 O -0.34 -5.52 10.47 -54.27 -0.57 -6.09 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 32 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16 33 H 0.06 0.51 8.12 -51.93 -0.42 0.08 16 34 H 0.06 0.71 6.31 -51.93 -0.33 0.38 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.41 6.63 6.64 -40.82 -0.27 6.36 16 37 H 0.13 3.21 6.25 -52.49 -0.33 2.88 16 38 H 0.28 6.17 8.29 -40.82 -0.34 5.83 16 39 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 40 H 0.12 2.65 8.06 -52.49 -0.42 2.22 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -32.30 331.40 -8.97 -41.26 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.50 Total: 9.91 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -3.11 Total: -4.84 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.44 Total: -46.37 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.77 Total: -17.72 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.30 -8.97 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548828529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.241 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds