Wall clock time and date at job start Tue Mar 31 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.86616 * 2 1 4 4 C 1.54094 * 109.87780 * 238.99270 * 2 1 3 5 5 C 1.54815 * 104.18930 * 238.54437 * 4 2 1 6 6 H 1.09000 * 110.91019 * 97.31905 * 5 4 2 7 7 C 1.52998 * 110.90650 * 220.92744 * 5 4 2 8 8 C 1.55003 * 102.08729 * 339.11998 * 5 4 2 9 9 H 1.08999 * 110.61844 * 278.51917 * 8 5 4 10 10 C 1.50708 * 110.61202 * 155.52343 * 8 5 4 11 11 O 1.21276 * 119.99640 * 249.47678 * 10 8 5 12 12 N 1.34773 * 119.99775 * 69.47862 * 10 8 5 13 13 C 1.39470 * 119.99812 * 174.78944 * 12 10 8 14 14 C 1.38596 * 119.58109 * 184.95360 * 13 12 10 15 15 C 1.40815 * 118.79385 * 179.97438 * 14 13 12 16 16 C 1.41543 * 120.99375 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99946 * 152.32778 * 16 15 14 18 18 C 1.40031 * 119.99771 * 332.33271 * 16 15 14 19 19 N 1.30737 * 120.00482 * 349.38263 * 18 16 15 20 20 Si 1.86805 * 119.99604 * 169.38443 * 18 16 15 21 21 H 1.48502 * 109.46893 * 89.99929 * 20 18 16 22 22 H 1.48502 * 109.46909 * 209.99722 * 20 18 16 23 23 H 1.48498 * 109.47344 * 329.99693 * 20 18 16 24 24 C 1.41171 * 118.00756 * 0.02562 * 15 14 13 25 25 C 1.37589 * 119.01979 * 359.97438 * 24 15 14 26 26 N 1.32089 * 121.10473 * 359.75019 * 25 24 15 27 27 O 1.43738 * 109.87897 * 121.16035 * 2 1 3 28 28 H 1.09004 * 109.46696 * 181.00654 * 1 2 3 29 29 H 1.08994 * 109.47418 * 301.00731 * 1 2 3 30 30 H 1.08996 * 109.47132 * 61.00911 * 1 2 3 31 31 H 1.08994 * 110.49231 * 357.22198 * 4 2 1 32 32 H 1.09000 * 110.48878 * 119.86989 * 4 2 1 33 33 H 1.08996 * 109.47659 * 58.54520 * 7 5 4 34 34 H 1.09007 * 109.46871 * 178.54611 * 7 5 4 35 35 H 1.08996 * 109.47203 * 298.54255 * 7 5 4 36 36 H 0.97000 * 120.00061 * 354.79518 * 12 10 8 37 37 H 1.07994 * 120.60342 * 0.02562 * 14 13 12 38 38 H 0.97003 * 120.00352 * 180.02562 * 19 18 16 39 39 H 1.08007 * 120.49128 * 179.97438 * 24 15 14 40 40 H 1.07997 * 119.44634 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0540 -0.7465 -1.2420 5 6 2.9196 -1.8906 -0.6601 6 1 2.3541 -2.8212 -0.6136 7 6 4.2021 -2.0732 -1.4742 8 6 3.2380 -1.3650 0.7629 9 1 4.0686 -0.6598 0.7347 10 6 3.5429 -2.5093 1.6952 11 8 2.7654 -2.7928 2.5817 12 7 4.6796 -3.2174 1.5436 13 6 5.0150 -4.2044 2.4700 14 6 6.2338 -4.8559 2.3646 15 6 6.5557 -5.8494 3.3092 16 6 7.7871 -6.5443 3.2452 17 1 8.2280 -6.9459 4.1456 18 6 8.4338 -6.7110 2.0144 19 7 7.8118 -6.4137 0.9035 20 14 10.1852 -7.3584 1.9597 21 1 10.1624 -8.8404 1.8669 22 1 10.8829 -6.7990 0.7741 23 1 10.9025 -6.9507 3.1943 24 6 5.6131 -6.1322 4.3213 25 6 4.4287 -5.4323 4.3448 26 7 4.1669 -4.5036 3.4427 27 8 2.0188 -0.6994 1.1567 28 1 -0.3633 -1.0276 0.0181 29 1 -0.3634 0.5294 0.8807 30 1 -0.3633 0.4981 -0.8989 31 1 1.2247 -1.1524 -1.8213 32 1 2.6619 -0.0834 -1.8575 33 1 4.7685 -1.1420 -1.4738 34 1 4.8048 -2.8653 -1.0299 35 1 3.9466 -2.3425 -2.4990 36 1 5.2644 -3.0404 0.7902 37 1 6.9243 -4.6057 1.5729 38 1 8.2596 -6.5295 0.0509 39 1 5.8185 -6.8868 5.0662 40 1 3.7024 -5.6434 5.1157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548828529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:45 Heat of formation + Delta-G solvation = -69.928803 kcal Electronic energy + Delta-G solvation = -23045.363662 eV Core-core repulsion = 19631.060929 eV Total energy + Delta-G solvation = -3414.302734 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72397 -40.49601 -39.14538 -36.17526 -35.66729 -34.52000 -33.13474 -32.45324 -30.60214 -28.01670 -27.82558 -27.57920 -23.90188 -23.62803 -22.43548 -21.76199 -21.29090 -19.50486 -18.81988 -17.75801 -17.07727 -17.06776 -16.63050 -16.14639 -16.08612 -15.96652 -15.58953 -14.94321 -14.77706 -14.51911 -14.34623 -14.22792 -13.85444 -13.57697 -13.22219 -13.19492 -12.88493 -12.87157 -12.69023 -12.46945 -12.34631 -12.10471 -11.90847 -11.66809 -11.55000 -11.50282 -11.18804 -10.98304 -10.68525 -9.93225 -9.62007 -8.91606 -8.60802 -6.58270 0.68778 0.98606 1.42569 1.51424 1.56699 1.73613 1.83367 2.21589 2.80266 2.95057 3.36336 3.46762 3.70421 3.82333 3.90433 4.04330 4.09501 4.19910 4.36582 4.45125 4.57884 4.69856 4.77318 4.78233 4.83297 4.87699 4.90143 4.97216 5.05314 5.14949 5.15290 5.22827 5.28848 5.31693 5.44940 5.59495 5.83416 5.92313 6.13294 6.44661 6.54290 6.77496 6.83131 7.22781 7.79416 8.29792 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024201 B = 0.003956 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.714437 B = 7075.527599 C = 8055.071195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 H 0.090 0.910 4 C -0.134 4.134 5 C -0.112 4.112 6 H 0.064 0.936 7 C -0.146 4.146 8 C 0.070 3.930 9 H 0.122 0.878 10 C 0.498 3.502 11 O -0.516 6.516 12 N -0.645 5.645 13 C 0.330 3.670 14 C -0.251 4.251 15 C 0.115 3.885 16 C -0.485 4.485 17 H 0.084 0.916 18 C 0.039 3.961 19 N -0.817 5.817 20 Si 0.990 3.010 21 H -0.264 1.264 22 H -0.263 1.263 23 H -0.260 1.260 24 C -0.294 4.294 25 C 0.111 3.889 26 N -0.582 5.582 27 O -0.382 6.382 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.422 0.578 37 H 0.129 0.871 38 H 0.292 0.708 39 H 0.118 0.882 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 11.113 -11.148 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.000 4.000 3 H 0.108 0.892 4 C -0.171 4.171 5 C -0.131 4.131 6 H 0.083 0.917 7 C -0.203 4.203 8 C 0.009 3.991 9 H 0.140 0.860 10 C 0.284 3.716 11 O -0.388 6.388 12 N -0.295 5.295 13 C 0.104 3.896 14 C -0.276 4.276 15 C 0.107 3.893 16 C -0.516 4.516 17 H 0.102 0.898 18 C -0.178 4.178 19 N -0.442 5.442 20 Si 0.810 3.190 21 H -0.189 1.189 22 H -0.187 1.187 23 H -0.183 1.183 24 C -0.317 4.317 25 C -0.043 4.043 26 N -0.302 5.302 27 O -0.302 6.302 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.261 0.739 37 H 0.146 0.854 38 H 0.103 0.897 39 H 0.136 0.864 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.940 11.466 -10.546 16.343 hybrid contribution 1.576 -1.050 -0.133 1.898 sum -3.364 10.417 -10.678 15.292 Atomic orbital electron populations 1.21966 0.93094 1.02265 1.03376 1.23144 0.96010 0.96432 0.84417 0.89197 1.23100 1.00358 0.96297 0.97365 1.22665 0.99136 0.99590 0.91747 0.91700 1.21858 0.94779 1.03134 1.00499 1.23158 0.90845 0.92185 0.92871 0.86029 1.21193 0.80907 0.83951 0.85595 1.90760 1.46738 1.67402 1.33919 1.43430 1.23986 1.34803 1.27239 1.18471 0.91028 0.90080 0.90001 1.21566 0.97024 1.02151 1.06870 1.18011 0.92652 0.88853 0.89785 1.19854 1.04290 1.31977 0.95441 0.89823 1.26799 1.03607 0.93274 0.94116 1.69776 1.38817 1.36057 0.99589 0.85088 0.75759 0.78895 0.79274 1.18925 1.18663 1.18331 1.22136 0.96818 1.07022 1.05762 1.22215 0.95429 0.91166 0.95489 1.67346 1.34428 1.21511 1.06881 1.89008 1.38886 1.67327 1.34963 0.93428 0.92696 0.88172 0.88902 0.87057 0.89452 0.93436 0.89710 0.73880 0.85371 0.89674 0.86424 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.36 71.98 0.67 -2.06 16 2 C 0.06 1.15 4.06 30.97 0.13 1.27 16 3 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.13 -2.06 6.23 31.58 0.20 -1.87 16 5 C -0.11 -2.46 3.15 -9.49 -0.03 -2.49 16 6 H 0.06 1.76 8.05 -2.39 -0.02 1.74 16 7 C -0.15 -2.42 9.00 71.98 0.65 -1.77 16 8 C 0.07 2.03 3.22 30.54 0.10 2.13 16 9 H 0.12 2.76 8.03 -2.39 -0.02 2.74 16 10 C 0.50 20.38 7.16 87.66 0.63 21.00 16 11 O -0.52 -26.80 14.83 15.19 0.23 -26.58 16 12 N -0.64 -26.22 5.39 -308.66 -1.66 -27.89 16 13 C 0.33 16.67 7.42 132.75 0.98 17.66 16 14 C -0.25 -13.01 8.59 22.99 0.20 -12.81 16 15 C 0.12 6.20 5.58 -21.11 -0.12 6.08 16 16 C -0.48 -25.04 9.13 23.52 0.21 -24.83 16 17 H 0.08 4.13 7.87 -2.91 -0.02 4.11 16 18 C 0.04 1.82 5.29 85.29 0.45 2.27 16 19 N -0.82 -39.40 10.83 21.84 0.24 -39.17 16 20 Si 0.99 35.50 29.57 68.60 2.03 37.52 16 21 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 22 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 23 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 24 C -0.29 -14.85 9.90 22.84 0.23 -14.63 16 25 C 0.11 5.55 11.15 84.50 0.94 6.49 16 26 N -0.58 -31.38 7.85 -193.53 -1.52 -32.90 16 27 O -0.38 -12.19 10.47 -130.77 -1.37 -13.56 16 28 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.25 7.70 -2.39 -0.02 1.23 16 32 H 0.11 1.06 7.86 -2.39 -0.02 1.04 16 33 H 0.09 1.05 8.12 -2.39 -0.02 1.03 16 34 H 0.05 0.96 6.31 -2.38 -0.02 0.94 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.42 13.83 6.64 -92.71 -0.62 13.21 16 37 H 0.13 6.52 6.25 -2.91 -0.02 6.50 16 38 H 0.29 12.53 8.29 -92.71 -0.77 11.76 16 39 H 0.12 5.41 8.06 -2.91 -0.02 5.38 16 40 H 0.15 6.43 8.06 -2.91 -0.02 6.40 16 Total: -1.00 -73.08 331.40 3.62 -69.46 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.44 Total: 36.65 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 5.24 Total: -3.55 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -2.95 Total: -99.95 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.14 Total: -40.13 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 2.03 Total: 37.52 kcal Total: -73.08 3.62 -69.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548828529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.472 kcal (2) G-P(sol) polarization free energy of solvation -73.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds