Wall clock time and date at job start Tue Mar 31 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47365 * 2 1 4 4 N 1.46901 * 109.46624 * 119.99888 * 2 1 3 5 5 C 1.46902 * 110.99937 * 274.99899 * 4 2 1 6 6 C 1.52998 * 109.46893 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.47128 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47330 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00094 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00128 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00156 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99940 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47514 * 89.99615 * 12 10 8 14 14 H 1.48501 * 109.47011 * 210.00017 * 12 10 8 15 15 H 1.48502 * 109.47119 * 329.99728 * 12 10 8 16 16 C 1.50700 * 109.47439 * 239.99712 * 2 1 3 17 17 C 1.38658 * 119.76678 * 280.00805 * 16 2 1 18 18 C 1.37760 * 120.39272 * 179.97438 * 17 16 2 19 19 C 1.39543 * 119.73149 * 0.29989 * 18 17 16 20 20 N 1.36155 * 133.70754 * 179.68438 * 19 18 17 21 21 C 1.30614 * 108.71838 * 180.02562 * 20 19 18 22 22 O 1.35182 * 124.93305 * 179.97438 * 21 20 19 23 23 O 1.34398 * 110.13354 * 359.48400 * 21 20 19 24 24 C 1.35260 * 108.18642 * 0.59806 * 23 21 20 25 25 C 1.37999 * 119.77037 * 100.02020 * 16 2 1 26 26 H 1.08998 * 109.47129 * 300.00274 * 1 2 3 27 27 H 1.09005 * 109.46990 * 59.99937 * 1 2 3 28 28 H 1.08998 * 109.47365 * 180.02562 * 1 2 3 29 29 H 1.00898 * 111.00245 * 38.95623 * 4 2 1 30 30 H 1.09003 * 109.47322 * 299.99847 * 5 4 2 31 31 H 1.08993 * 109.47263 * 60.00138 * 5 4 2 32 32 H 1.09003 * 109.47583 * 299.99698 * 6 5 4 33 33 H 1.09001 * 109.47382 * 60.00217 * 6 5 4 34 34 H 1.09008 * 109.46603 * 299.99720 * 7 6 5 35 35 H 1.08993 * 109.47280 * 59.99823 * 7 6 5 36 36 H 0.97006 * 120.00074 * 180.02562 * 11 10 8 37 37 H 1.07996 * 119.80109 * 359.97438 * 17 16 2 38 38 H 1.08002 * 120.12951 * 180.02562 * 18 17 16 39 39 H 0.96701 * 113.99836 * 89.96967 * 22 21 20 40 40 H 1.08002 * 120.05209 * 0.02827 * 25 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2226 2.3469 6 6 2.5960 -0.5328 3.5742 7 6 2.6608 0.4201 4.7695 8 6 3.1673 -0.3238 5.9782 9 1 3.4175 -1.3716 5.9017 10 6 3.3112 0.3332 7.1818 11 7 3.7528 -0.3161 8.2368 12 14 2.8790 2.1457 7.3140 13 1 1.4497 2.2876 7.6910 14 1 3.7300 2.7831 8.3507 15 1 3.1139 2.8073 6.0054 16 6 2.0324 -0.7105 -1.2304 17 6 2.0647 -2.0963 -1.2601 18 6 2.5210 -2.7590 -2.3784 19 6 2.9588 -2.0297 -3.4845 20 7 3.4580 -2.3769 -4.7027 21 6 3.7155 -1.2878 -5.3761 22 8 4.2236 -1.2539 -6.6284 23 8 3.3920 -0.2059 -4.6473 24 6 2.9195 -0.6278 -3.4522 25 6 2.4574 0.0228 -2.3195 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.4495 -1.4979 1.4101 30 1 2.7588 1.0462 2.1183 31 1 1.0870 0.6164 2.5525 32 1 1.9199 -1.3567 3.8031 33 1 3.5915 -0.9263 3.3684 34 1 3.3367 1.2442 4.5409 35 1 1.6652 0.8132 4.9752 36 1 3.8537 0.1460 9.0837 37 1 1.7302 -2.6596 -0.4015 38 1 2.5439 -3.8386 -2.3971 39 1 3.5531 -1.2565 -7.3251 40 1 2.4299 1.1020 -2.2889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586789949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:49 Heat of formation + Delta-G solvation = -7.776181 kcal Electronic energy + Delta-G solvation = -21721.552473 eV Core-core repulsion = 18309.944879 eV Total energy + Delta-G solvation = -3411.607594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.52180 -39.34258 -38.23717 -36.71742 -34.97704 -33.81680 -32.09756 -31.02039 -29.95561 -28.52420 -26.30574 -24.12524 -23.93317 -22.42632 -22.06941 -21.34019 -20.14759 -19.54155 -18.07399 -17.58372 -17.03682 -16.72691 -15.88774 -15.33221 -15.10671 -14.76959 -14.47441 -14.29278 -14.01936 -13.74837 -13.32007 -13.22794 -12.75162 -12.63118 -12.48131 -12.11681 -11.96040 -11.84062 -11.59913 -11.41866 -11.22937 -10.97205 -10.79819 -10.77127 -9.96646 -9.76135 -9.60530 -9.17710 -9.05782 -8.61827 -8.53355 -8.33745 -6.03486 -4.01320 0.29442 0.97375 1.56004 1.98472 3.10474 3.30084 3.34268 3.37846 3.41171 4.14004 4.18367 4.45377 4.52299 4.62088 4.74216 4.86828 4.94685 5.07256 5.15210 5.30264 5.40156 5.43537 5.49873 5.65770 5.68584 5.75295 5.78127 5.88044 6.03901 6.13618 6.18829 6.36277 6.52602 6.55210 6.62478 6.89541 7.11040 7.19218 7.33517 7.39934 7.47948 7.80651 8.55410 9.02145 9.58995 11.10044 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.002428 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.882082 B =11531.264938 C =11597.362885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.120 3.880 3 H 0.091 0.909 4 N -0.682 5.682 5 C 0.057 3.943 6 C -0.100 4.100 7 C -0.013 4.013 8 C -0.519 4.519 9 H 0.072 0.928 10 C 0.064 3.936 11 N -0.904 5.904 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.266 1.266 16 C -0.028 4.028 17 C -0.091 4.091 18 C -0.059 4.059 19 C 0.021 3.979 20 N -0.462 5.462 21 C 0.409 3.591 22 O -0.409 6.409 23 O -0.228 6.228 24 C 0.022 3.978 25 C -0.092 4.092 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.342 0.658 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.015 0.985 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.418 0.582 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 -0.174 -28.210 29.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.010 3.990 3 H 0.109 0.891 4 N -0.313 5.313 5 C -0.071 4.071 6 C -0.138 4.138 7 C -0.051 4.051 8 C -0.557 4.557 9 H 0.090 0.910 10 C -0.137 4.137 11 N -0.543 5.543 12 Si 0.708 3.292 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.190 1.190 16 C -0.029 4.029 17 C -0.111 4.111 18 C -0.078 4.078 19 C -0.090 4.090 20 N -0.205 5.205 21 C 0.159 3.841 22 O -0.216 6.216 23 O -0.122 6.122 24 C -0.027 4.027 25 C -0.111 4.111 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.278 0.722 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.621 -0.604 -28.197 28.759 hybrid contribution -1.458 1.797 0.068 2.315 sum -7.079 1.193 -28.130 29.031 Atomic orbital electron populations 1.22498 0.95791 1.02751 1.02714 1.20454 0.92891 0.97609 0.88066 0.89119 1.60600 1.56844 1.10113 1.03699 1.22200 0.99228 0.95478 0.90193 1.21448 1.00948 0.98603 0.92779 1.19541 0.96143 0.95517 0.93869 1.21147 1.43513 0.98323 0.92710 0.91015 1.25053 0.94734 0.98098 0.95773 1.69919 1.46891 1.36614 1.00903 0.86764 0.78448 0.85944 0.78019 1.20398 1.21423 1.19037 1.19703 0.96017 0.93644 0.93510 1.20900 0.99076 0.93734 0.97340 1.20317 0.97420 1.00286 0.89757 1.19581 1.04264 0.91592 0.93603 1.71018 1.18146 1.26052 1.05293 1.22421 0.94367 0.79315 0.88014 1.84925 1.33593 1.94062 1.09063 1.84465 1.66427 1.36783 1.24511 1.19892 1.02465 0.94053 0.86325 1.19637 1.02068 1.00409 0.89007 0.91650 0.91934 0.91947 0.83973 0.91344 0.95435 0.92981 0.91849 0.96638 0.97295 0.92776 0.84112 0.84364 0.72186 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 9.14 37.16 0.34 -1.16 16 2 C 0.12 1.19 2.78 -68.86 -0.19 1.00 16 3 H 0.09 0.90 7.65 -51.93 -0.40 0.50 16 4 N -0.68 -8.26 5.70 -107.95 -0.62 -8.87 16 5 C 0.06 0.84 5.48 -3.82 -0.02 0.82 16 6 C -0.10 -1.89 5.41 -26.73 -0.14 -2.03 16 7 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 8 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 9 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 10 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 11 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 12 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 16 C -0.03 -0.28 4.96 -104.55 -0.52 -0.80 16 17 C -0.09 -0.88 9.29 -39.60 -0.37 -1.25 16 18 C -0.06 -0.61 10.10 -39.27 -0.40 -1.00 16 19 C 0.02 0.26 7.23 -84.69 -0.61 -0.35 16 20 N -0.46 -5.70 11.37 -12.79 -0.15 -5.84 16 21 C 0.41 4.31 9.54 52.24 0.50 4.81 16 22 O -0.41 -2.82 13.62 -40.53 -0.55 -3.38 16 23 O -0.23 -2.62 10.78 -20.55 -0.22 -2.84 16 24 C 0.02 0.26 7.42 -38.70 -0.29 -0.03 16 25 C -0.09 -0.94 9.67 -39.55 -0.38 -1.33 16 26 H 0.06 0.58 7.45 -51.93 -0.39 0.20 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 29 H 0.34 3.74 7.80 -39.29 -0.31 3.44 16 30 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 31 H 0.03 0.39 7.43 -51.93 -0.39 0.00 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.02 0.36 7.20 -51.92 -0.37 -0.01 16 35 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.14 1.16 7.21 -52.49 -0.38 0.78 16 38 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.42 0.24 9.06 45.56 0.41 0.66 16 40 H 0.14 1.14 8.03 -52.49 -0.42 0.72 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -34.23 338.22 -7.71 -41.93 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.75 Total: -0.83 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.63 Total: -15.06 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.01 Total: -41.93 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.77 Total: -6.21 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.23 -7.71 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586789949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.158 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds