Wall clock time and date at job start Tue Mar 31 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47365 * 2 1 4 4 N 1.46901 * 109.46624 * 119.99888 * 2 1 3 5 5 C 1.46902 * 110.99937 * 274.99899 * 4 2 1 6 6 C 1.52998 * 109.46893 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.47128 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47330 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00094 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00128 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00156 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99940 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47514 * 89.99615 * 12 10 8 14 14 H 1.48501 * 109.47011 * 210.00017 * 12 10 8 15 15 H 1.48502 * 109.47119 * 329.99728 * 12 10 8 16 16 C 1.50700 * 109.47439 * 239.99712 * 2 1 3 17 17 C 1.38658 * 119.76678 * 280.00805 * 16 2 1 18 18 C 1.37760 * 120.39272 * 179.97438 * 17 16 2 19 19 C 1.39543 * 119.73149 * 0.29989 * 18 17 16 20 20 N 1.36155 * 133.70754 * 179.68438 * 19 18 17 21 21 C 1.30614 * 108.71838 * 180.02562 * 20 19 18 22 22 O 1.35182 * 124.93305 * 179.97438 * 21 20 19 23 23 O 1.34398 * 110.13354 * 359.48400 * 21 20 19 24 24 C 1.35260 * 108.18642 * 0.59806 * 23 21 20 25 25 C 1.37999 * 119.77037 * 100.02020 * 16 2 1 26 26 H 1.08998 * 109.47129 * 300.00274 * 1 2 3 27 27 H 1.09005 * 109.46990 * 59.99937 * 1 2 3 28 28 H 1.08998 * 109.47365 * 180.02562 * 1 2 3 29 29 H 1.00898 * 111.00245 * 38.95623 * 4 2 1 30 30 H 1.09003 * 109.47322 * 299.99847 * 5 4 2 31 31 H 1.08993 * 109.47263 * 60.00138 * 5 4 2 32 32 H 1.09003 * 109.47583 * 299.99698 * 6 5 4 33 33 H 1.09001 * 109.47382 * 60.00217 * 6 5 4 34 34 H 1.09008 * 109.46603 * 299.99720 * 7 6 5 35 35 H 1.08993 * 109.47280 * 59.99823 * 7 6 5 36 36 H 0.97006 * 120.00074 * 180.02562 * 11 10 8 37 37 H 1.07996 * 119.80109 * 359.97438 * 17 16 2 38 38 H 1.08002 * 120.12951 * 180.02562 * 18 17 16 39 39 H 0.96701 * 113.99836 * 89.96967 * 22 21 20 40 40 H 1.08002 * 120.05209 * 0.02827 * 25 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2226 2.3469 6 6 2.5960 -0.5328 3.5742 7 6 2.6608 0.4201 4.7695 8 6 3.1673 -0.3238 5.9782 9 1 3.4175 -1.3716 5.9017 10 6 3.3112 0.3332 7.1818 11 7 3.7528 -0.3161 8.2368 12 14 2.8790 2.1457 7.3140 13 1 1.4497 2.2876 7.6910 14 1 3.7300 2.7831 8.3507 15 1 3.1139 2.8073 6.0054 16 6 2.0324 -0.7105 -1.2304 17 6 2.0647 -2.0963 -1.2601 18 6 2.5210 -2.7590 -2.3784 19 6 2.9588 -2.0297 -3.4845 20 7 3.4580 -2.3769 -4.7027 21 6 3.7155 -1.2878 -5.3761 22 8 4.2236 -1.2539 -6.6284 23 8 3.3920 -0.2059 -4.6473 24 6 2.9195 -0.6278 -3.4522 25 6 2.4574 0.0228 -2.3195 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.4495 -1.4979 1.4101 30 1 2.7588 1.0462 2.1183 31 1 1.0870 0.6164 2.5525 32 1 1.9199 -1.3567 3.8031 33 1 3.5915 -0.9263 3.3684 34 1 3.3367 1.2442 4.5409 35 1 1.6652 0.8132 4.9752 36 1 3.8537 0.1460 9.0837 37 1 1.7302 -2.6596 -0.4015 38 1 2.5439 -3.8386 -2.3971 39 1 3.5531 -1.2565 -7.3251 40 1 2.4299 1.1020 -2.2889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586789949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:49 Heat of formation + Delta-G solvation = -35.525754 kcal Electronic energy + Delta-G solvation = -21722.755785 eV Core-core repulsion = 18309.944879 eV Total energy + Delta-G solvation = -3412.810905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.31562 -40.11346 -38.87967 -37.69649 -36.04804 -35.30307 -33.81097 -31.88385 -31.18525 -29.32682 -27.84749 -25.04123 -24.71529 -23.78275 -22.98655 -22.19769 -21.71395 -20.25468 -18.89837 -18.83200 -18.37265 -17.78678 -16.86023 -16.31475 -16.28956 -15.84591 -15.68161 -15.19973 -15.02195 -14.79598 -14.67095 -14.15755 -14.07778 -13.69143 -13.44845 -13.32466 -13.19667 -12.71402 -12.68353 -12.62936 -12.38653 -12.18483 -12.00683 -11.77912 -11.58603 -11.43924 -11.42933 -11.20808 -10.73648 -9.83832 -9.44672 -9.24253 -8.26795 -6.30831 -0.45667 0.18350 0.84932 1.19618 1.37630 1.40384 1.52274 2.37932 2.38722 2.55681 3.08641 3.22596 3.41536 3.74722 3.96266 3.97470 4.13017 4.18124 4.31072 4.34636 4.45316 4.47168 4.68650 4.74540 4.79324 4.84955 4.97071 5.01247 5.05742 5.06413 5.16102 5.23127 5.31309 5.43814 5.59127 5.62432 5.67092 5.70697 6.13249 6.20710 6.33036 6.39804 6.53412 6.78240 7.33688 8.90187 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.002428 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.882082 B =11531.264938 C =11597.362885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.125 3.875 3 H 0.094 0.906 4 N -0.689 5.689 5 C 0.072 3.928 6 C -0.092 4.092 7 C -0.011 4.011 8 C -0.532 4.532 9 H 0.029 0.971 10 C -0.002 4.002 11 N -0.954 5.954 12 Si 0.955 3.045 13 H -0.265 1.265 14 H -0.287 1.287 15 H -0.244 1.244 16 C -0.031 4.031 17 C -0.089 4.089 18 C -0.067 4.067 19 C 0.002 3.998 20 N -0.491 5.491 21 C 0.418 3.582 22 O -0.407 6.407 23 O -0.235 6.235 24 C 0.003 3.997 25 C -0.092 4.092 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.349 0.651 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.019 0.981 35 H 0.021 0.979 36 H 0.265 0.735 37 H 0.155 0.845 38 H 0.151 0.849 39 H 0.445 0.555 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.264 1.647 -29.759 30.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.015 3.985 3 H 0.112 0.888 4 N -0.320 5.320 5 C -0.057 4.057 6 C -0.130 4.130 7 C -0.049 4.049 8 C -0.570 4.570 9 H 0.047 0.953 10 C -0.198 4.198 11 N -0.595 5.595 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.213 1.213 15 H -0.167 1.167 16 C -0.032 4.032 17 C -0.108 4.108 18 C -0.086 4.086 19 C -0.109 4.109 20 N -0.235 5.235 21 C 0.168 3.832 22 O -0.219 6.219 23 O -0.129 6.129 24 C -0.046 4.046 25 C -0.111 4.111 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.168 0.832 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.310 0.690 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.917 1.206 -29.800 30.616 hybrid contribution -1.006 1.108 0.470 1.568 sum -7.922 2.313 -29.329 30.469 Atomic orbital electron populations 1.22444 0.94342 1.03320 1.03133 1.20442 0.93946 0.97390 0.86703 0.88760 1.60476 1.57880 1.10151 1.03506 1.21893 0.99589 0.95045 0.89142 1.21267 1.00331 0.98063 0.93325 1.19500 0.96221 0.95857 0.93325 1.21553 1.43320 0.97042 0.95099 0.95294 1.26108 0.94626 1.03850 0.95238 1.70088 1.48652 1.39060 1.01743 0.85590 0.78637 0.79051 0.78935 1.19003 1.21304 1.16704 1.19759 0.96135 0.93786 0.93538 1.21091 0.98421 0.93864 0.97466 1.20530 0.97473 1.01021 0.89576 1.19893 1.04773 0.92201 0.94036 1.70998 1.19702 1.26936 1.05884 1.22615 0.92874 0.78916 0.88781 1.84895 1.34756 1.93793 1.08432 1.84457 1.66662 1.37166 1.24656 1.20138 1.03424 0.94195 0.86833 1.19851 1.01380 1.01338 0.88526 0.91883 0.90812 0.91370 0.83184 0.91290 0.94143 0.93211 0.93557 0.96294 0.96072 0.92605 0.82753 0.83165 0.68981 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.14 71.98 0.66 -1.73 16 2 C 0.12 2.15 2.78 44.17 0.12 2.27 16 3 H 0.09 1.59 7.65 -2.39 -0.02 1.57 16 4 N -0.69 -15.09 5.70 -495.45 -2.82 -17.91 16 5 C 0.07 1.94 5.48 86.30 0.47 2.42 16 6 C -0.09 -3.38 5.41 30.60 0.17 -3.22 16 7 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 8 C -0.53 -30.81 9.66 25.60 0.25 -30.57 16 9 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 10 C 0.00 -0.12 5.47 84.66 0.46 0.34 16 11 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 12 Si 0.95 43.99 27.47 68.60 1.88 45.88 16 13 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 14 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 15 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 16 C -0.03 -0.57 4.96 -19.82 -0.10 -0.66 16 17 C -0.09 -1.59 9.29 22.26 0.21 -1.38 16 18 C -0.07 -1.33 10.10 22.47 0.23 -1.11 16 19 C 0.00 0.06 7.23 39.28 0.28 0.34 16 20 N -0.49 -11.94 11.37 -422.73 -4.81 -16.75 16 21 C 0.42 8.48 9.54 130.42 1.24 9.73 16 22 O -0.41 -5.02 13.62 -62.35 -0.85 -5.87 16 23 O -0.23 -5.21 10.78 9.15 0.10 -5.11 16 24 C 0.00 0.08 7.42 22.84 0.17 0.25 16 25 C -0.09 -1.74 9.67 22.29 0.22 -1.52 16 26 H 0.06 0.92 7.45 -2.39 -0.02 0.90 16 27 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 29 H 0.35 6.84 7.80 -89.70 -0.70 6.14 16 30 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 31 H 0.04 1.00 7.43 -2.39 -0.02 0.98 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.02 0.84 7.20 -2.38 -0.02 0.83 16 35 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 36 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 37 H 0.15 2.25 7.21 -2.91 -0.02 2.23 16 38 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.44 -0.32 9.06 -74.06 -0.67 -0.99 16 40 H 0.15 2.25 8.03 -2.91 -0.02 2.22 16 Total: -1.00 -74.97 338.22 -2.05 -77.02 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -0.35 Total: 8.17 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 4.50 Total: -25.23 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -7.33 Total: -94.85 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -0.75 Total: -10.98 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Total: -74.97 -2.05 -77.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586789949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.492 kcal (2) G-P(sol) polarization free energy of solvation -74.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds