Wall clock time and date at job start Tue Mar 31 2020 06:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 O 1.42901 * 109.47343 * 239.99730 * 2 1 3 5 5 C 1.53004 * 109.46938 * 119.99674 * 2 1 3 6 6 N 1.46493 * 115.55422 * 277.79923 * 5 2 1 7 7 C 1.34778 * 120.00043 * 293.50642 * 6 5 2 8 8 O 1.21581 * 119.99887 * 355.46134 * 7 6 5 9 9 N 1.34781 * 119.99948 * 175.46062 * 7 6 5 10 10 C 1.39952 * 120.00189 * 184.81036 * 9 7 6 11 11 C 1.39286 * 119.94741 * 322.80360 * 10 9 7 12 12 C 1.38485 * 120.42762 * 179.75772 * 11 10 9 13 13 C 1.37676 * 120.32107 * 0.51770 * 12 11 10 14 14 C 1.40744 * 119.88779 * 359.74260 * 13 12 11 15 15 C 1.41402 * 120.21377 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99985 * 143.15049 * 15 14 13 17 17 C 1.39935 * 119.99946 * 323.15278 * 15 14 13 18 18 N 1.30828 * 119.99773 * 160.93190 * 17 15 14 19 19 Si 1.86793 * 120.00066 * 340.93055 * 17 15 14 20 20 H 1.48500 * 109.47328 * 85.37733 * 19 17 15 21 21 H 1.48502 * 109.47332 * 205.37974 * 19 17 15 22 22 H 1.48504 * 109.47382 * 325.37870 * 19 17 15 23 23 C 1.38239 * 119.94348 * 143.07570 * 10 9 7 24 24 C 1.53002 * 117.49375 * 132.09544 * 5 2 1 25 25 C 1.53000 * 117.49477 * 63.47661 * 5 2 1 26 26 H 1.09000 * 109.46820 * 174.97284 * 1 2 3 27 27 H 1.08992 * 109.47261 * 294.97537 * 1 2 3 28 28 H 1.08999 * 109.47100 * 54.97801 * 1 2 3 29 29 H 0.96698 * 114.00110 * 300.00010 * 4 2 1 30 30 H 0.97000 * 119.99614 * 113.49611 * 6 5 2 31 31 H 0.97002 * 119.99752 * 4.81447 * 9 7 6 32 32 H 1.08003 * 119.78320 * 0.02562 * 11 10 9 33 33 H 1.08004 * 119.84100 * 180.23845 * 12 11 10 34 34 H 1.08004 * 120.05622 * 179.75845 * 13 12 11 35 35 H 0.97005 * 119.99973 * 179.97438 * 18 17 15 36 36 H 1.07991 * 120.16095 * 359.96099 * 23 10 9 37 37 H 1.09004 * 117.50379 * 359.97438 * 24 5 2 38 38 H 1.09000 * 117.49960 * 145.02383 * 24 5 2 39 39 H 1.09005 * 117.49378 * 214.97605 * 25 5 2 40 40 H 1.08995 * 117.50220 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 2.0815 0.0851 2.4717 7 6 2.9347 1.1242 2.5649 8 8 3.7271 1.3424 1.6690 9 7 2.9096 1.9214 3.6514 10 6 3.7242 3.0582 3.7043 11 6 5.0056 3.0213 3.1595 12 6 5.8183 4.1418 3.2019 13 6 5.3718 5.3023 3.7930 14 6 4.0813 5.3528 4.3525 15 6 3.6156 6.5413 4.9608 16 1 2.5803 6.8310 4.8573 17 6 4.4960 7.3421 5.6968 18 7 4.1950 8.5916 5.9410 19 14 6.1010 6.6270 6.3306 20 1 7.1377 6.7222 5.2716 21 1 6.5438 7.3877 7.5266 22 1 5.8976 5.2024 6.6974 23 6 3.2579 4.2141 4.3021 24 6 3.1332 -1.7747 1.0599 25 6 1.7040 -2.2068 1.3939 26 1 -0.3633 -1.0237 -0.0901 27 1 -0.3633 0.4339 0.9315 28 1 -0.3633 0.5898 -0.8416 29 1 1.7211 -1.5953 -1.2328 30 1 1.4948 -0.1289 3.2139 31 1 2.3268 1.7073 4.3967 32 1 5.3661 2.1142 2.6972 33 1 6.8088 4.1038 2.7731 34 1 6.0107 6.1724 3.8271 35 1 4.8051 9.1466 6.4515 36 1 2.2660 4.2425 4.7280 37 1 3.4888 -1.9544 0.0453 38 1 3.8836 -1.8681 1.8449 39 1 1.5141 -2.5844 2.3987 40 1 1.1193 -2.6703 0.5993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596926603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:06 Heat of formation + Delta-G solvation = -28.747780 kcal Electronic energy + Delta-G solvation = -22776.500616 eV Core-core repulsion = 19363.983626 eV Total energy + Delta-G solvation = -3412.516990 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51004 -39.02831 -37.40891 -35.66873 -34.35487 -33.30713 -32.50428 -30.75270 -30.22494 -28.44752 -25.07517 -24.40913 -22.93070 -22.22312 -21.04484 -20.42541 -19.77764 -18.09557 -17.90465 -17.36036 -16.40981 -15.80934 -15.23618 -15.13243 -14.74814 -14.51015 -14.35272 -14.18506 -13.61596 -13.40524 -12.97884 -12.72536 -12.63015 -12.17496 -11.95840 -11.78308 -11.67270 -11.63664 -11.15303 -10.92962 -10.77298 -10.60399 -10.49764 -10.35197 -10.15145 -9.80698 -9.59967 -9.33198 -8.98048 -8.89361 -7.59668 -7.12881 -6.85043 -4.43918 2.45991 2.64260 2.70817 3.18663 3.24425 3.32465 3.39627 3.53188 4.05470 4.13845 4.22279 4.44994 4.51467 4.57921 4.72266 4.99637 5.09018 5.24941 5.29881 5.40053 5.53584 5.76333 5.84348 5.85756 5.95970 6.05256 6.38960 6.47675 6.51998 6.56385 6.71334 6.78460 7.02309 7.31843 7.39722 7.42003 7.59933 7.74499 7.93070 8.13303 8.24035 8.42978 8.68448 8.83698 8.89786 10.18755 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033438 B = 0.003425 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.180584 B = 8173.926697 C = 8381.530715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.132 3.868 3 H 0.114 0.886 4 O -0.549 6.549 5 C 0.095 3.905 6 N -0.718 5.718 7 C 0.701 3.299 8 O -0.559 6.559 9 N -0.682 5.682 10 C 0.177 3.823 11 C -0.219 4.219 12 C -0.075 4.075 13 C -0.232 4.232 14 C 0.106 3.894 15 C -0.464 4.464 16 H 0.089 0.911 17 C 0.088 3.912 18 N -0.817 5.817 19 Si 0.905 3.095 20 H -0.264 1.264 21 H -0.290 1.290 22 H -0.252 1.252 23 C -0.225 4.225 24 C -0.163 4.163 25 C -0.178 4.178 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.367 0.633 30 H 0.396 0.604 31 H 0.398 0.602 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.283 0.717 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.536 -19.550 -5.239 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.072 3.928 3 H 0.131 0.869 4 O -0.353 6.353 5 C 0.006 3.994 6 N -0.375 5.375 7 C 0.402 3.598 8 O -0.433 6.433 9 N -0.329 5.329 10 C 0.085 3.915 11 C -0.240 4.240 12 C -0.094 4.094 13 C -0.252 4.252 14 C 0.103 3.897 15 C -0.493 4.493 16 H 0.107 0.893 17 C -0.129 4.129 18 N -0.443 5.443 19 Si 0.731 3.269 20 H -0.189 1.189 21 H -0.217 1.217 22 H -0.176 1.176 23 C -0.247 4.247 24 C -0.201 4.201 25 C -0.216 4.216 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.214 0.786 30 H 0.231 0.769 31 H 0.232 0.768 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.550 -18.489 -6.103 20.246 hybrid contribution -0.243 -0.841 1.374 1.629 sum -5.794 -19.330 -4.729 20.727 Atomic orbital electron populations 1.22447 0.95852 1.02279 1.03027 1.21560 0.92432 0.97188 0.81632 0.86877 1.86717 1.77132 1.28515 1.42928 1.21142 1.05027 0.86093 0.87150 1.44373 1.43209 1.32504 1.17399 1.15953 0.81370 0.79508 0.83015 1.90967 1.39797 1.72638 1.39923 1.42595 1.45513 1.26166 1.18635 1.17323 0.89549 0.84581 1.00096 1.20531 0.93563 0.99587 1.10309 1.20576 0.97754 0.93129 0.97946 1.21316 0.99096 0.98043 1.06761 1.17488 0.90722 0.91651 0.89861 1.19298 0.98556 1.02543 1.28916 0.89288 1.26017 0.99077 0.93452 0.94342 1.69713 1.37673 1.05816 1.31061 0.86431 0.81602 0.80810 0.78062 1.18905 1.21704 1.17587 1.20848 1.01348 0.91319 1.11221 1.23351 0.91768 1.00991 1.03988 1.23355 0.99890 0.94717 1.03600 0.92333 0.91428 0.91616 0.78638 0.76934 0.76844 0.86978 0.88414 0.87730 0.90688 0.87893 0.87243 0.88448 0.88167 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.35 37.16 0.35 -1.20 16 2 C 0.13 1.52 3.73 -26.73 -0.10 1.42 16 3 H 0.11 1.76 7.20 -51.93 -0.37 1.38 16 4 O -0.55 -6.08 12.02 -35.23 -0.42 -6.50 16 5 C 0.09 1.00 1.63 -131.82 -0.22 0.79 16 6 N -0.72 -8.27 5.46 -52.42 -0.29 -8.56 16 7 C 0.70 11.58 8.13 -86.91 -0.71 10.87 16 8 O -0.56 -11.60 13.12 5.29 0.07 -11.53 16 9 N -0.68 -11.35 5.33 -14.27 -0.08 -11.43 16 10 C 0.18 3.79 6.25 -83.76 -0.52 3.26 16 11 C -0.22 -4.95 8.69 -39.10 -0.34 -5.29 16 12 C -0.08 -1.72 10.02 -39.70 -0.40 -2.12 16 13 C -0.23 -5.74 7.37 -38.84 -0.29 -6.03 16 14 C 0.11 2.71 4.89 -106.85 -0.52 2.19 16 15 C -0.46 -12.65 9.52 -37.74 -0.36 -13.01 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.09 2.35 5.36 -17.34 -0.09 2.26 16 18 N -0.82 -22.14 13.93 55.55 0.77 -21.36 16 19 Si 0.91 20.97 25.16 -169.99 -4.28 16.69 16 20 H -0.26 -5.97 6.40 56.52 0.36 -5.61 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.25 -5.95 7.11 56.52 0.40 -5.54 16 23 C -0.23 -5.19 9.71 -38.68 -0.38 -5.57 16 24 C -0.16 -1.64 9.72 -26.73 -0.26 -1.90 16 25 C -0.18 -1.24 9.43 -26.73 -0.25 -1.50 16 26 H 0.06 0.38 7.70 -51.93 -0.40 -0.02 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.37 2.42 7.77 45.56 0.35 2.77 16 30 H 0.40 3.29 8.85 -40.82 -0.36 2.93 16 31 H 0.40 5.11 8.84 -40.82 -0.36 4.75 16 32 H 0.11 2.54 6.36 -52.48 -0.33 2.20 16 33 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 34 H 0.10 2.58 5.49 -52.48 -0.29 2.29 16 35 H 0.28 6.96 8.30 -40.82 -0.34 6.63 16 36 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.11 1.08 6.98 -51.93 -0.36 0.72 16 38 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.50 7.35 -51.93 -0.38 0.11 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -32.35 331.00 -7.96 -40.31 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -4.64 Total: 13.22 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -4.08 Total: -15.82 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.41 Total: -41.36 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.35 Total: -18.03 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.28 Total: 16.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.35 -7.96 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596926603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.561 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds